Wall clock time and date at job start Tue Mar 31 2020 18:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.46832 * 2 1 4 4 C 1.50699 * 109.46954 * 119.99606 * 2 1 3 5 5 H 1.07996 * 120.00096 * 120.00656 * 4 2 1 6 6 C 1.37885 * 120.00123 * 299.99852 * 4 2 1 7 7 N 1.31512 * 120.00248 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 119.99724 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47325 * 89.99542 * 8 6 4 10 10 H 1.48501 * 109.47080 * 209.99568 * 8 6 4 11 11 H 1.48503 * 109.47095 * 329.99762 * 8 6 4 12 12 N 1.46495 * 109.47488 * 239.99683 * 2 1 3 13 13 C 1.34776 * 120.00398 * 84.99708 * 12 2 1 14 14 O 1.21287 * 119.99457 * 0.02562 * 13 12 2 15 15 C 1.50694 * 120.00685 * 180.02562 * 13 12 2 16 16 H 1.09007 * 109.31509 * 330.11737 * 15 13 12 17 17 C 1.53187 * 109.29668 * 90.05936 * 15 13 12 18 18 O 1.43253 * 108.53521 * 169.53907 * 17 15 13 19 19 C 1.42969 * 112.98313 * 291.48929 * 18 17 15 20 20 C 1.50341 * 109.81088 * 49.59689 * 19 18 17 21 21 O 1.21291 * 118.83181 * 164.09543 * 20 19 18 22 22 N 1.33864 * 122.33754 * 344.07956 * 20 19 18 23 23 C 1.46501 * 118.73270 * 181.90346 * 22 20 19 24 24 C 1.50695 * 109.47164 * 272.89172 * 23 22 20 25 25 C 1.38244 * 119.99901 * 95.44556 * 24 23 22 26 26 C 1.38231 * 120.00243 * 180.02562 * 25 24 23 27 27 C 1.38242 * 119.99921 * 359.96098 * 26 25 24 28 28 C 1.38232 * 119.99772 * 0.27356 * 27 26 25 29 29 C 1.38231 * 120.00529 * 275.47168 * 24 23 22 30 30 H 1.09002 * 109.47022 * 60.00613 * 1 2 3 31 31 H 1.08998 * 109.46634 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47616 * 300.00548 * 1 2 3 33 33 H 0.97001 * 119.99859 * 180.02562 * 7 6 4 34 34 H 0.97002 * 119.99759 * 265.00130 * 12 2 1 35 35 H 1.08994 * 109.78985 * 49.75285 * 17 15 13 36 36 H 1.08996 * 109.55006 * 289.17666 * 17 15 13 37 37 H 1.09000 * 109.41490 * 289.49473 * 19 18 17 38 38 H 1.08999 * 109.35259 * 169.67050 * 19 18 17 39 39 H 1.09004 * 109.47027 * 152.89694 * 23 22 20 40 40 H 1.09001 * 109.47048 * 32.89449 * 23 22 20 41 41 H 1.08000 * 119.99478 * 0.02562 * 25 24 23 42 42 H 1.07996 * 120.00287 * 179.97438 * 26 25 24 43 43 H 1.07995 * 119.99681 * 179.97438 * 27 26 25 44 44 H 1.07995 * 119.99893 * 179.72902 * 28 27 26 45 45 H 1.07997 * 119.99884 * 359.97438 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5883 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1380 -0.8587 3.5567 8 14 0.6247 1.2793 2.6540 9 1 -0.8029 0.8729 2.6996 10 1 0.9758 1.9954 3.9067 11 1 0.8471 2.1766 1.4919 12 7 2.0184 -0.6906 -1.1961 13 6 2.1472 -0.0184 -2.3571 14 8 1.8591 1.1585 -2.4115 15 6 2.6490 -0.7289 -3.5876 16 1 3.3237 -1.5319 -3.2904 17 6 1.4594 -1.3151 -4.3543 18 8 1.9202 -1.7684 -5.6327 19 6 2.3102 -0.6985 -6.4971 20 6 3.2401 0.2317 -5.7688 21 8 3.8984 1.0221 -6.4115 22 7 3.3671 0.2189 -4.4363 23 6 4.2654 1.1889 -3.8051 24 6 5.6629 0.6267 -3.7643 25 6 6.5665 0.9479 -4.7601 26 6 7.8483 0.4319 -4.7231 27 6 8.2270 -0.4047 -3.6897 28 6 7.3221 -0.7297 -2.6965 29 6 6.0415 -0.2104 -2.7315 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.9033 -0.5274 4.4376 34 1 2.2491 -1.6318 -1.1524 35 1 0.6954 -0.5499 -4.4912 36 1 1.0440 -2.1545 -3.7967 37 1 1.4244 -0.1490 -6.8158 38 1 2.8173 -1.1068 -7.3712 39 1 3.9255 1.3914 -2.7894 40 1 4.2627 2.1146 -4.3806 41 1 6.2707 1.6019 -5.5671 42 1 8.5540 0.6824 -5.5012 43 1 9.2284 -0.8081 -3.6610 44 1 7.6166 -1.3867 -1.8916 45 1 5.3357 -0.4613 -1.9535 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171403403.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:37 Heat of formation + Delta-G solvation = -91.888959 kcal Electronic energy + Delta-G solvation = -29533.825398 eV Core-core repulsion = 25516.124449 eV Total energy + Delta-G solvation = -4017.700949 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.34093 -40.50148 -40.02740 -38.73941 -37.15509 -36.29076 -34.47170 -33.21753 -32.13451 -31.82862 -30.87022 -29.11556 -27.21560 -26.76017 -25.56120 -23.58388 -23.21811 -22.43146 -21.46532 -20.24426 -19.47030 -18.84027 -18.27427 -18.11079 -17.56119 -17.41355 -16.78937 -16.33265 -16.22020 -16.00717 -15.88673 -15.77496 -15.67331 -15.18293 -14.87903 -14.80578 -14.46407 -14.28331 -14.11739 -13.93983 -13.67363 -13.53867 -13.35182 -13.07801 -12.78669 -12.74462 -12.54451 -12.21735 -12.13663 -11.91764 -11.68971 -11.64524 -11.27375 -11.22038 -10.86810 -10.58942 -10.05227 -9.87594 -9.87246 -9.73095 -8.37000 -6.42506 0.27805 0.44930 1.26724 1.28985 1.33280 1.37023 1.44187 1.81938 2.12922 2.26214 2.72833 2.88165 2.99900 3.10967 3.54032 3.67222 3.74112 3.83221 3.87273 4.10540 4.11705 4.20243 4.25377 4.38084 4.46005 4.48070 4.52267 4.56850 4.59600 4.65457 4.70483 4.71760 4.97665 5.01640 5.03512 5.11384 5.31724 5.41922 5.52108 5.56424 5.57020 5.57874 5.64370 6.05659 6.10319 6.17292 6.59092 6.72699 6.85029 7.15982 7.31639 8.77880 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011704 B = 0.004155 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.871872 B = 6737.560655 C = 8244.103310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.243 3.757 3 H 0.022 0.978 4 C -0.529 4.529 5 H 0.062 0.938 6 C 0.033 3.967 7 N -0.932 5.932 8 Si 0.934 3.066 9 H -0.260 1.260 10 H -0.297 1.297 11 H -0.263 1.263 12 N -0.686 5.686 13 C 0.502 3.498 14 O -0.573 6.573 15 C 0.097 3.903 16 H 0.121 0.879 17 C 0.060 3.940 18 O -0.361 6.361 19 C 0.053 3.947 20 C 0.484 3.516 21 O -0.568 6.568 22 N -0.578 5.578 23 C 0.152 3.848 24 C -0.117 4.117 25 C -0.108 4.108 26 C -0.127 4.127 27 C -0.116 4.116 28 C -0.126 4.126 29 C -0.117 4.117 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.037 0.963 33 H 0.269 0.731 34 H 0.412 0.588 35 H 0.074 0.926 36 H 0.153 0.847 37 H 0.114 0.886 38 H 0.153 0.847 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.118 0.882 42 H 0.144 0.856 43 H 0.150 0.850 44 H 0.139 0.861 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.899 -3.417 -18.578 19.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.139 3.861 3 H 0.040 0.960 4 C -0.567 4.567 5 H 0.080 0.920 6 C -0.168 4.168 7 N -0.571 5.571 8 Si 0.762 3.238 9 H -0.185 1.185 10 H -0.225 1.225 11 H -0.188 1.188 12 N -0.336 5.336 13 C 0.287 3.713 14 O -0.453 6.453 15 C -0.011 4.011 16 H 0.138 0.862 17 C -0.017 4.017 18 O -0.278 6.278 19 C -0.026 4.026 20 C 0.274 3.726 21 O -0.447 6.447 22 N -0.310 5.310 23 C 0.029 3.971 24 C -0.118 4.118 25 C -0.126 4.126 26 C -0.144 4.144 27 C -0.134 4.134 28 C -0.144 4.144 29 C -0.136 4.136 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.248 0.752 35 H 0.092 0.908 36 H 0.171 0.829 37 H 0.131 0.869 38 H 0.170 0.830 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.136 0.864 42 H 0.162 0.838 43 H 0.168 0.832 44 H 0.157 0.843 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.002 -2.399 -18.800 19.370 hybrid contribution -0.317 0.835 1.084 1.404 sum 3.684 -1.564 -17.716 18.163 Atomic orbital electron populations 1.22349 0.97519 1.02073 0.99488 1.18788 0.91373 0.93088 0.82881 0.95982 1.21220 1.32267 1.13604 0.89635 0.92021 1.25482 0.96778 0.98991 0.95507 1.69964 1.46618 1.41847 0.98654 0.86092 0.80006 0.80684 0.77035 1.18546 1.22507 1.18827 1.46013 1.64397 1.14560 1.08592 1.20800 0.78180 0.87260 0.85048 1.90700 1.51737 1.17391 1.85489 1.21942 0.97396 0.91817 0.89914 0.86177 1.23085 0.92045 1.02366 0.84252 1.88233 1.84222 1.30626 1.24718 1.23033 0.97828 0.88080 0.93677 1.21695 0.83760 0.85326 0.81865 1.90695 1.47067 1.41528 1.65430 1.47319 1.43015 1.34574 1.06057 1.20365 0.86023 0.91589 0.99081 1.20177 0.95635 0.99628 0.96336 1.21219 0.93986 0.99823 0.97612 1.21449 0.95921 0.97699 0.99369 1.21518 1.00518 0.97488 0.93834 1.21421 0.93143 1.00147 0.99689 1.21164 0.97463 0.97327 0.97657 0.93306 0.91050 0.94416 0.92146 0.75193 0.90820 0.82918 0.86886 0.82987 0.90150 0.90461 0.86440 0.83838 0.83249 0.84266 0.86859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.10 8.96 71.98 0.65 -5.45 16 2 C 0.24 10.41 2.15 44.25 0.10 10.51 16 3 H 0.02 1.09 6.64 -2.38 -0.02 1.07 16 4 C -0.53 -26.65 9.31 25.60 0.24 -26.42 16 5 H 0.06 3.29 7.98 -2.91 -0.02 3.27 16 6 C 0.03 1.74 5.45 84.66 0.46 2.20 16 7 N -0.93 -53.68 13.96 21.45 0.30 -53.38 16 8 Si 0.93 42.85 24.37 68.60 1.67 44.52 16 9 H -0.26 -11.17 6.87 99.48 0.68 -10.49 16 10 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 11 H -0.26 -12.01 6.53 99.48 0.65 -11.37 16 12 N -0.69 -22.71 5.07 -446.10 -2.26 -24.97 16 13 C 0.50 15.83 5.81 87.66 0.51 16.34 16 14 O -0.57 -22.71 14.63 -3.05 -0.04 -22.76 16 15 C 0.10 2.31 3.39 44.38 0.15 2.46 16 16 H 0.12 2.48 8.14 -2.38 -0.02 2.46 16 17 C 0.06 1.08 6.18 72.04 0.45 1.52 16 18 O -0.36 -6.51 10.85 -148.98 -1.62 -8.12 16 19 C 0.05 0.93 6.98 71.12 0.50 1.43 16 20 C 0.48 12.81 7.55 87.69 0.66 13.48 16 21 O -0.57 -18.19 15.58 -3.06 -0.05 -18.23 16 22 N -0.58 -15.92 2.55 -808.76 -2.06 -17.98 16 23 C 0.15 4.73 4.80 85.63 0.41 5.15 16 24 C -0.12 -3.37 5.43 -19.87 -0.11 -3.48 16 25 C -0.11 -2.90 9.35 22.27 0.21 -2.70 16 26 C -0.13 -2.78 10.05 22.27 0.22 -2.56 16 27 C -0.12 -2.36 10.05 22.27 0.22 -2.14 16 28 C -0.13 -2.93 10.05 22.27 0.22 -2.71 16 29 C -0.12 -3.23 9.72 22.27 0.22 -3.01 16 30 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.04 1.55 3.27 -2.39 -0.01 1.55 16 33 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 34 H 0.41 11.40 8.54 -92.71 -0.79 10.60 16 35 H 0.07 1.37 8.06 -2.39 -0.02 1.35 16 36 H 0.15 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.15 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.08 2.83 5.54 -2.38 -0.01 2.82 16 40 H 0.08 2.58 7.29 -2.39 -0.02 2.56 16 41 H 0.12 3.30 7.53 -2.91 -0.02 3.28 16 42 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 43 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 44 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 45 H 0.11 3.24 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -69.39 367.00 1.19 -68.20 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: 0.15 Total: 28.09 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 5.10 Total: 4.63 kcal Atomic # 7 Polarization: -92.31 SS G_CDS: -4.02 Total: -96.33 kcal Atomic # 8 Polarization: -47.41 SS G_CDS: -1.71 Total: -49.11 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.67 Total: 44.52 kcal Total: -69.39 1.19 -68.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171403403.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.688 kcal (2) G-P(sol) polarization free energy of solvation -69.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds