Wall clock time and date at job start Tue Mar 31 2020 18:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47400 * 2 1 4 4 C 1.50705 * 109.47213 * 239.99707 * 2 1 3 5 5 H 1.07995 * 119.99873 * 245.42355 * 4 2 1 6 6 C 1.37875 * 119.99511 * 65.42889 * 4 2 1 7 7 N 1.31515 * 120.00387 * 4.78621 * 6 4 2 8 8 Si 1.86805 * 119.99810 * 184.78647 * 6 4 2 9 9 H 1.48499 * 109.46742 * 94.95718 * 8 6 4 10 10 H 1.48491 * 109.47413 * 214.95673 * 8 6 4 11 11 H 1.48502 * 109.46869 * 334.96006 * 8 6 4 12 12 N 1.46503 * 109.47271 * 120.00113 * 2 1 3 13 13 C 1.34779 * 119.99577 * 275.00360 * 12 2 1 14 14 O 1.21280 * 120.00322 * 359.97438 * 13 12 2 15 15 C 1.50699 * 119.99649 * 179.97438 * 13 12 2 16 16 H 1.09001 * 109.32246 * 331.24661 * 15 13 12 17 17 C 1.53193 * 109.30112 * 91.19597 * 15 13 12 18 18 O 1.43244 * 108.53671 * 169.53166 * 17 15 13 19 19 C 1.42963 * 112.98847 * 291.48300 * 18 17 15 20 20 C 1.50352 * 109.80866 * 49.59975 * 19 18 17 21 21 O 1.21281 * 118.83339 * 164.09907 * 20 19 18 22 22 N 1.33865 * 122.33086 * 344.07991 * 20 19 18 23 23 C 1.46507 * 118.72930 * 181.90031 * 22 20 19 24 24 C 1.50700 * 109.47434 * 272.42358 * 23 22 20 25 25 C 1.38231 * 120.00442 * 93.91072 * 24 23 22 26 26 C 1.38234 * 119.99963 * 180.02562 * 25 24 23 27 27 C 1.38234 * 119.99888 * 359.95268 * 26 25 24 28 28 C 1.38238 * 120.00299 * 0.28074 * 27 26 25 29 29 C 1.38230 * 119.99618 * 359.53086 * 28 27 26 30 30 H 1.08997 * 109.46971 * 302.63212 * 1 2 3 31 31 H 1.08996 * 109.47036 * 62.63776 * 1 2 3 32 32 H 1.09008 * 109.47002 * 182.63827 * 1 2 3 33 33 H 0.97003 * 119.99731 * 179.97438 * 7 6 4 34 34 H 0.97000 * 120.00118 * 94.99712 * 12 2 1 35 35 H 1.09001 * 109.78968 * 49.74160 * 17 15 13 36 36 H 1.08995 * 109.53963 * 289.17580 * 17 15 13 37 37 H 1.08999 * 109.41718 * 289.49950 * 19 18 17 38 38 H 1.09003 * 109.36217 * 169.66890 * 19 18 17 39 39 H 1.08999 * 109.46824 * 152.41332 * 23 22 20 40 40 H 1.09004 * 109.46631 * 32.42272 * 23 22 20 41 41 H 1.07995 * 119.99830 * 0.02562 * 25 24 23 42 42 H 1.07996 * 119.99580 * 179.97438 * 26 25 24 43 43 H 1.08003 * 119.99981 * 180.02562 * 27 26 25 44 44 H 1.07994 * 119.99907 * 179.72546 * 28 27 26 45 45 H 1.07997 * 120.00054 * 180.21036 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.5791 -1.6368 -1.1337 6 6 1.7940 -0.1778 -2.4796 7 7 1.2117 0.9959 -2.5938 8 14 2.2982 -1.1231 -4.0099 9 1 1.1405 -1.9062 -4.5117 10 1 2.7418 -0.1689 -5.0575 11 1 3.4130 -2.0459 -3.6767 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8589 1.1586 2.4115 15 6 2.6488 -0.7288 3.5877 16 1 2.3781 -1.7831 3.5310 17 6 4.1728 -0.5933 3.6646 18 8 4.6067 -1.0535 4.9498 19 6 4.1957 -0.1965 6.0178 20 6 2.7255 0.0954 5.8997 21 8 2.1418 0.5556 6.8581 22 7 2.0381 -0.1342 4.7742 23 6 0.6168 0.2189 4.7326 24 6 -0.2032 -0.9370 5.2448 25 6 -0.5715 -0.9871 6.5762 26 6 -1.3233 -2.0477 7.0459 27 6 -1.7076 -3.0578 6.1840 28 6 -1.3353 -3.0103 4.8536 29 6 -0.5868 -1.9477 4.3830 30 1 -0.3633 0.5541 0.8654 31 1 -0.3633 0.4723 -0.9127 32 1 -0.3633 -1.0267 0.0473 33 1 1.0444 1.3708 -3.4727 34 1 2.2491 -1.6318 1.1526 35 1 4.4575 0.4509 3.5347 36 1 4.6326 -1.1999 2.8844 37 1 4.7555 0.7374 5.9689 38 1 4.3922 -0.6873 6.9710 39 1 0.3280 0.4427 3.7057 40 1 0.4415 1.0942 5.3583 41 1 -0.2719 -0.1975 7.2493 42 1 -1.6107 -2.0870 8.0862 43 1 -2.2953 -3.8863 6.5510 44 1 -1.6318 -3.8017 4.1813 45 1 -0.2987 -1.9087 3.3429 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171403406.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:42 Heat of formation + Delta-G solvation = -79.963792 kcal Electronic energy + Delta-G solvation = -29476.587207 eV Core-core repulsion = 25459.403372 eV Total energy + Delta-G solvation = -4017.183835 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.17375 -39.09259 -38.96528 -37.69622 -35.60037 -34.76558 -32.65672 -32.00764 -30.87842 -30.54090 -28.98443 -28.03085 -25.66023 -25.32236 -24.48159 -22.53418 -21.58575 -21.44317 -19.80692 -19.10848 -18.05720 -17.64411 -17.12814 -16.67640 -16.07389 -15.83667 -15.33432 -15.17925 -15.11981 -14.90886 -14.70289 -14.50186 -14.21538 -13.96359 -13.47283 -13.34575 -13.14465 -12.86616 -12.57193 -12.53979 -12.14243 -11.94975 -11.69317 -11.53924 -11.24155 -11.15979 -11.08676 -10.91572 -10.89653 -10.69998 -10.48033 -10.38102 -9.88244 -9.40625 -9.21506 -8.90576 -8.74672 -8.71645 -8.63754 -8.15943 -6.24139 -4.32469 1.25945 1.42063 2.41228 2.57808 3.10589 3.18111 3.25840 3.27033 3.38629 3.80931 3.90968 4.15249 4.27711 4.61259 4.73869 4.84809 4.87631 4.96002 5.00239 5.09466 5.10618 5.15696 5.19249 5.35261 5.40837 5.47333 5.50938 5.67299 5.84131 6.01219 6.06190 6.16817 6.46059 6.50097 6.51851 6.62988 6.64433 6.74831 6.95015 7.00328 7.20059 7.24641 7.36419 7.55020 7.70410 7.93623 7.94687 8.41051 8.61904 8.84430 9.34784 10.83677 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012728 B = 0.003733 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.280130 B = 7499.623965 C = 8793.194391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.263 3.737 3 H 0.056 0.944 4 C -0.538 4.538 5 H 0.063 0.937 6 C 0.069 3.931 7 N -0.881 5.881 8 Si 0.900 3.100 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.698 5.698 13 C 0.493 3.507 14 O -0.536 6.536 15 C 0.089 3.911 16 H 0.100 0.900 17 C 0.057 3.943 18 O -0.365 6.365 19 C 0.048 3.952 20 C 0.492 3.508 21 O -0.540 6.540 22 N -0.573 5.573 23 C 0.145 3.855 24 C -0.104 4.104 25 C -0.094 4.094 26 C -0.128 4.128 27 C -0.120 4.120 28 C -0.124 4.124 29 C -0.103 4.103 30 H 0.017 0.983 31 H 0.078 0.922 32 H 0.029 0.971 33 H 0.266 0.734 34 H 0.391 0.609 35 H 0.075 0.925 36 H 0.125 0.875 37 H 0.092 0.908 38 H 0.131 0.869 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.127 0.873 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.022 -7.317 15.302 16.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.162 3.838 3 H 0.074 0.926 4 C -0.576 4.576 5 H 0.081 0.919 6 C -0.135 4.135 7 N -0.518 5.518 8 Si 0.727 3.273 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 N -0.346 5.346 13 C 0.276 3.724 14 O -0.414 6.414 15 C -0.020 4.020 16 H 0.118 0.882 17 C -0.021 4.021 18 O -0.283 6.283 19 C -0.031 4.031 20 C 0.280 3.720 21 O -0.418 6.418 22 N -0.305 5.305 23 C 0.023 3.977 24 C -0.105 4.105 25 C -0.113 4.113 26 C -0.146 4.146 27 C -0.138 4.138 28 C -0.142 4.142 29 C -0.122 4.122 30 H 0.037 0.963 31 H 0.097 0.903 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.224 0.776 35 H 0.093 0.907 36 H 0.143 0.857 37 H 0.110 0.890 38 H 0.148 0.852 39 H 0.121 0.879 40 H 0.111 0.889 41 H 0.145 0.855 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.578 -6.231 15.679 16.881 hybrid contribution 0.084 -0.796 -1.109 1.368 sum 0.662 -7.027 14.570 16.190 Atomic orbital electron populations 1.22021 0.98507 0.98790 1.00763 1.18833 0.90799 0.94458 0.79728 0.92632 1.21159 1.37257 1.08874 0.90320 0.91933 1.24886 0.94818 0.94702 0.99109 1.69950 1.41609 1.15921 1.24303 0.86457 0.78806 0.79627 0.82373 1.20532 1.21066 1.19749 1.46627 1.63973 1.13697 1.10327 1.20244 0.79868 0.87776 0.84552 1.90716 1.50509 1.15503 1.84632 1.21891 0.95611 0.98749 0.85700 0.88245 1.22966 0.90255 1.02367 0.86496 1.88200 1.76191 1.49292 1.14595 1.22878 0.90056 0.97205 0.93010 1.20931 0.90514 0.78097 0.82464 1.90700 1.69731 1.45143 1.36192 1.47187 1.10161 1.61364 1.11768 1.20605 0.78148 0.95018 1.03927 1.20262 0.98928 0.97077 0.94201 1.21216 0.96669 0.98325 0.95047 1.21144 0.99078 0.94748 0.99592 1.21150 1.00094 0.98688 0.93866 1.21128 0.98832 0.98425 0.95770 1.21140 0.97682 0.93707 0.99634 0.96348 0.90291 0.95190 0.92461 0.77620 0.90689 0.85722 0.89002 0.85174 0.87899 0.88905 0.85501 0.86295 0.86346 0.86041 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.34 37.16 0.35 -2.87 16 2 C 0.26 6.08 2.43 -69.08 -0.17 5.91 16 3 H 0.06 1.52 7.56 -51.93 -0.39 1.12 16 4 C -0.54 -13.18 8.67 -34.44 -0.30 -13.48 16 5 H 0.06 1.45 7.72 -52.49 -0.41 1.05 16 6 C 0.07 1.76 5.25 -17.82 -0.09 1.66 16 7 N -0.88 -23.84 11.93 55.43 0.66 -23.18 16 8 Si 0.90 19.66 29.54 -169.99 -5.02 14.64 16 9 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 12 N -0.70 -12.51 5.07 -54.93 -0.28 -12.79 16 13 C 0.49 8.47 5.77 -10.98 -0.06 8.41 16 14 O -0.54 -11.35 14.71 5.56 0.08 -11.27 16 15 C 0.09 1.19 3.38 -69.20 -0.23 0.95 16 16 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 17 C 0.06 0.65 6.18 37.26 0.23 0.88 16 18 O -0.37 -4.17 10.85 -35.23 -0.38 -4.55 16 19 C 0.05 0.52 6.98 35.84 0.25 0.77 16 20 C 0.49 7.02 7.56 -11.56 -0.09 6.93 16 21 O -0.54 -8.88 15.48 5.56 0.09 -8.80 16 22 N -0.57 -8.31 2.55 -169.38 -0.43 -8.75 16 23 C 0.14 2.21 4.82 -5.19 -0.03 2.19 16 24 C -0.10 -1.46 5.43 -104.62 -0.57 -2.03 16 25 C -0.09 -1.26 9.37 -39.59 -0.37 -1.63 16 26 C -0.13 -1.48 10.05 -39.58 -0.40 -1.88 16 27 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 28 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 29 C -0.10 -1.37 9.72 -39.58 -0.38 -1.75 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 1.98 6.65 -51.93 -0.35 1.63 16 32 H 0.03 0.62 8.14 -51.92 -0.42 0.19 16 33 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.39 5.89 8.53 -40.82 -0.35 5.54 16 35 H 0.07 0.91 8.06 -51.93 -0.42 0.49 16 36 H 0.12 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.13 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.10 1.75 5.56 -51.93 -0.29 1.46 16 40 H 0.09 1.48 7.29 -51.93 -0.38 1.11 16 41 H 0.13 1.75 7.43 -52.49 -0.39 1.36 16 42 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 43 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 44 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 45 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 374.71 15.07 5.65 5.65 Total: -1.00 -30.57 374.71 -8.63 -39.19 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -6.33 Total: 9.35 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -2.66 Total: 0.50 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: -0.05 Total: -44.71 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.21 Total: -24.62 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.57 -8.63 -39.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171403406.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.770 kcal (2) G-P(sol) polarization free energy of solvation -30.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds