Wall clock time and date at job start Tue Mar 31 2020 18:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47400 * 2 1 4 4 C 1.50705 * 109.47213 * 239.99707 * 2 1 3 5 5 H 1.07995 * 119.99873 * 245.42355 * 4 2 1 6 6 C 1.37875 * 119.99511 * 65.42889 * 4 2 1 7 7 N 1.31515 * 120.00387 * 4.78621 * 6 4 2 8 8 Si 1.86805 * 119.99810 * 184.78647 * 6 4 2 9 9 H 1.48499 * 109.46742 * 94.95718 * 8 6 4 10 10 H 1.48491 * 109.47413 * 214.95673 * 8 6 4 11 11 H 1.48502 * 109.46869 * 334.96006 * 8 6 4 12 12 N 1.46503 * 109.47271 * 120.00113 * 2 1 3 13 13 C 1.34779 * 119.99577 * 275.00360 * 12 2 1 14 14 O 1.21280 * 120.00322 * 359.97438 * 13 12 2 15 15 C 1.50699 * 119.99649 * 179.97438 * 13 12 2 16 16 H 1.09001 * 109.32246 * 331.24661 * 15 13 12 17 17 C 1.53193 * 109.30112 * 91.19597 * 15 13 12 18 18 O 1.43244 * 108.53671 * 169.53166 * 17 15 13 19 19 C 1.42963 * 112.98847 * 291.48300 * 18 17 15 20 20 C 1.50352 * 109.80866 * 49.59975 * 19 18 17 21 21 O 1.21281 * 118.83339 * 164.09907 * 20 19 18 22 22 N 1.33865 * 122.33086 * 344.07991 * 20 19 18 23 23 C 1.46507 * 118.72930 * 181.90031 * 22 20 19 24 24 C 1.50700 * 109.47434 * 272.42358 * 23 22 20 25 25 C 1.38231 * 120.00442 * 93.91072 * 24 23 22 26 26 C 1.38234 * 119.99963 * 180.02562 * 25 24 23 27 27 C 1.38234 * 119.99888 * 359.95268 * 26 25 24 28 28 C 1.38238 * 120.00299 * 0.28074 * 27 26 25 29 29 C 1.38230 * 119.99618 * 359.53086 * 28 27 26 30 30 H 1.08997 * 109.46971 * 302.63212 * 1 2 3 31 31 H 1.08996 * 109.47036 * 62.63776 * 1 2 3 32 32 H 1.09008 * 109.47002 * 182.63827 * 1 2 3 33 33 H 0.97003 * 119.99731 * 179.97438 * 7 6 4 34 34 H 0.97000 * 120.00118 * 94.99712 * 12 2 1 35 35 H 1.09001 * 109.78968 * 49.74160 * 17 15 13 36 36 H 1.08995 * 109.53963 * 289.17580 * 17 15 13 37 37 H 1.08999 * 109.41718 * 289.49950 * 19 18 17 38 38 H 1.09003 * 109.36217 * 169.66890 * 19 18 17 39 39 H 1.08999 * 109.46824 * 152.41332 * 23 22 20 40 40 H 1.09004 * 109.46631 * 32.42272 * 23 22 20 41 41 H 1.07995 * 119.99830 * 0.02562 * 25 24 23 42 42 H 1.07996 * 119.99580 * 179.97438 * 26 25 24 43 43 H 1.08003 * 119.99981 * 180.02562 * 27 26 25 44 44 H 1.07994 * 119.99907 * 179.72546 * 28 27 26 45 45 H 1.07997 * 120.00054 * 180.21036 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.5791 -1.6368 -1.1337 6 6 1.7940 -0.1778 -2.4796 7 7 1.2117 0.9959 -2.5938 8 14 2.2982 -1.1231 -4.0099 9 1 1.1405 -1.9062 -4.5117 10 1 2.7418 -0.1689 -5.0575 11 1 3.4130 -2.0459 -3.6767 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8589 1.1586 2.4115 15 6 2.6488 -0.7288 3.5877 16 1 2.3781 -1.7831 3.5310 17 6 4.1728 -0.5933 3.6646 18 8 4.6067 -1.0535 4.9498 19 6 4.1957 -0.1965 6.0178 20 6 2.7255 0.0954 5.8997 21 8 2.1418 0.5556 6.8581 22 7 2.0381 -0.1342 4.7742 23 6 0.6168 0.2189 4.7326 24 6 -0.2032 -0.9370 5.2448 25 6 -0.5715 -0.9871 6.5762 26 6 -1.3233 -2.0477 7.0459 27 6 -1.7076 -3.0578 6.1840 28 6 -1.3353 -3.0103 4.8536 29 6 -0.5868 -1.9477 4.3830 30 1 -0.3633 0.5541 0.8654 31 1 -0.3633 0.4723 -0.9127 32 1 -0.3633 -1.0267 0.0473 33 1 1.0444 1.3708 -3.4727 34 1 2.2491 -1.6318 1.1526 35 1 4.4575 0.4509 3.5347 36 1 4.6326 -1.1999 2.8844 37 1 4.7555 0.7374 5.9689 38 1 4.3922 -0.6873 6.9710 39 1 0.3280 0.4427 3.7057 40 1 0.4415 1.0942 5.3583 41 1 -0.2719 -0.1975 7.2493 42 1 -1.6107 -2.0870 8.0862 43 1 -2.2953 -3.8863 6.5510 44 1 -1.6318 -3.8017 4.1813 45 1 -0.2987 -1.9087 3.3429 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171403406.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:41 Heat of formation + Delta-G solvation = -99.945280 kcal Electronic energy + Delta-G solvation = -29477.453670 eV Core-core repulsion = 25459.403372 eV Total energy + Delta-G solvation = -4018.050297 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.32042 -40.41944 -40.01896 -38.73772 -37.01588 -36.26003 -34.39568 -33.13705 -31.84474 -31.77904 -30.48808 -29.08090 -27.31529 -26.73297 -25.55169 -23.53589 -23.18452 -22.42463 -21.41770 -20.23089 -19.39930 -18.80769 -18.21265 -17.93606 -17.48327 -17.14214 -16.72474 -16.30670 -16.19804 -16.05893 -15.88315 -15.76860 -15.59737 -15.15302 -14.71885 -14.49202 -14.38804 -14.26204 -13.97678 -13.72470 -13.52232 -13.21760 -13.00831 -12.92886 -12.75466 -12.69763 -12.54000 -12.34964 -12.20274 -12.11775 -11.90736 -11.68849 -11.20309 -11.11099 -10.60457 -10.57452 -9.95780 -9.86279 -9.81060 -9.72199 -8.18188 -6.32987 0.28918 0.46236 1.29907 1.36384 1.47141 1.48437 1.58265 1.85977 2.18206 2.45048 2.75625 2.89698 3.10666 3.15495 3.55340 3.72028 3.77278 3.84979 3.87425 4.11349 4.12137 4.20481 4.26455 4.37235 4.47545 4.53023 4.59328 4.66298 4.71194 4.74101 4.88587 4.99533 5.04030 5.06256 5.12836 5.40220 5.52965 5.56779 5.57425 5.57478 5.64582 5.65697 5.85651 6.03940 6.06956 6.16540 6.75000 6.79138 6.88070 7.30302 7.45030 8.90163 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012728 B = 0.003733 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.280130 B = 7499.623965 C = 8793.194391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.272 3.728 3 H 0.005 0.995 4 C -0.542 4.542 5 H 0.079 0.921 6 C 0.017 3.983 7 N -0.920 5.920 8 Si 0.967 3.033 9 H -0.276 1.276 10 H -0.291 1.291 11 H -0.258 1.258 12 N -0.690 5.690 13 C 0.499 3.501 14 O -0.580 6.580 15 C 0.099 3.901 16 H 0.125 0.875 17 C 0.059 3.941 18 O -0.359 6.359 19 C 0.052 3.948 20 C 0.484 3.516 21 O -0.568 6.568 22 N -0.578 5.578 23 C 0.152 3.848 24 C -0.117 4.117 25 C -0.109 4.109 26 C -0.127 4.127 27 C -0.116 4.116 28 C -0.124 4.124 29 C -0.116 4.116 30 H 0.013 0.987 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.264 0.736 34 H 0.409 0.591 35 H 0.067 0.933 36 H 0.152 0.848 37 H 0.111 0.889 38 H 0.155 0.845 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.115 0.885 42 H 0.142 0.858 43 H 0.151 0.849 44 H 0.144 0.856 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.883 -10.634 16.075 19.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.168 3.832 3 H 0.023 0.977 4 C -0.580 4.580 5 H 0.097 0.903 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.792 3.208 9 H -0.201 1.201 10 H -0.217 1.217 11 H -0.182 1.182 12 N -0.340 5.340 13 C 0.283 3.717 14 O -0.460 6.460 15 C -0.008 4.008 16 H 0.142 0.858 17 C -0.018 4.018 18 O -0.277 6.277 19 C -0.027 4.027 20 C 0.273 3.727 21 O -0.448 6.448 22 N -0.310 5.310 23 C 0.029 3.971 24 C -0.118 4.118 25 C -0.128 4.128 26 C -0.145 4.145 27 C -0.133 4.133 28 C -0.141 4.141 29 C -0.135 4.135 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.245 0.755 35 H 0.085 0.915 36 H 0.169 0.831 37 H 0.128 0.872 38 H 0.172 0.828 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.133 0.867 42 H 0.160 0.840 43 H 0.168 0.832 44 H 0.162 0.838 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.467 -9.598 16.470 19.119 hybrid contribution -0.233 0.281 -1.274 1.325 sum 1.234 -9.317 15.196 17.868 Atomic orbital electron populations 1.21837 0.98376 0.99436 0.99093 1.18371 0.90833 0.92343 0.81603 0.97672 1.21533 1.36698 1.09179 0.90623 0.90271 1.25752 0.94920 0.95375 1.02326 1.70105 1.43220 1.17712 1.24770 0.85409 0.78786 0.78238 0.78388 1.20141 1.21746 1.18211 1.46273 1.64026 1.14392 1.09273 1.20826 0.78497 0.87173 0.85195 1.90704 1.52149 1.17791 1.85355 1.21936 0.96855 0.98988 0.83066 0.85787 1.23049 0.88559 1.02704 0.87505 1.88220 1.75685 1.49363 1.14403 1.23039 0.87340 0.98446 0.93865 1.21677 0.91880 0.77338 0.81799 1.90686 1.70603 1.46387 1.37085 1.47329 1.09902 1.61415 1.12315 1.20355 0.79382 0.95347 1.01986 1.20159 0.99716 0.97049 0.94844 1.21208 0.97849 0.99072 0.94660 1.21440 0.98058 0.94023 1.00990 1.21529 0.99394 0.99075 0.93346 1.21433 0.97857 0.98203 0.96650 1.21172 0.98688 0.94306 0.99299 0.96756 0.93062 0.93303 0.92712 0.75488 0.91455 0.83072 0.87157 0.82767 0.90263 0.90776 0.86731 0.83989 0.83178 0.83798 0.86556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.97 9.34 71.98 0.67 -5.30 16 2 C 0.27 12.82 2.43 44.25 0.11 12.92 16 3 H 0.01 0.31 7.56 -2.39 -0.02 0.29 16 4 C -0.54 -26.34 8.67 25.60 0.22 -26.12 16 5 H 0.08 3.51 7.72 -2.91 -0.02 3.49 16 6 C 0.02 0.84 5.25 84.65 0.44 1.29 16 7 N -0.92 -51.14 11.93 21.45 0.26 -50.88 16 8 Si 0.97 39.90 29.54 68.60 2.03 41.92 16 9 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 10 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 12 N -0.69 -24.51 5.07 -446.09 -2.26 -26.77 16 13 C 0.50 17.28 5.77 87.66 0.51 17.79 16 14 O -0.58 -25.74 14.71 -3.03 -0.04 -25.78 16 15 C 0.10 2.55 3.38 44.39 0.15 2.70 16 16 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 17 C 0.06 1.24 6.18 72.05 0.45 1.69 16 18 O -0.36 -7.17 10.85 -148.98 -1.62 -8.78 16 19 C 0.05 1.01 6.98 71.13 0.50 1.51 16 20 C 0.48 13.58 7.56 87.69 0.66 14.24 16 21 O -0.57 -18.95 15.48 -3.03 -0.05 -19.00 16 22 N -0.58 -16.83 2.55 -808.71 -2.06 -18.89 16 23 C 0.15 4.88 4.82 85.63 0.41 5.30 16 24 C -0.12 -3.33 5.43 -19.86 -0.11 -3.44 16 25 C -0.11 -2.93 9.37 22.27 0.21 -2.73 16 26 C -0.13 -2.72 10.05 22.27 0.22 -2.50 16 27 C -0.12 -2.19 10.05 22.27 0.22 -1.97 16 28 C -0.12 -2.60 10.05 22.27 0.22 -2.38 16 29 C -0.12 -3.00 9.72 22.27 0.22 -2.78 16 30 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 2.66 6.65 -2.39 -0.02 2.64 16 32 H 0.05 2.02 8.14 -2.38 -0.02 2.01 16 33 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 34 H 0.41 11.55 8.53 -92.71 -0.79 10.76 16 35 H 0.07 1.54 8.06 -2.39 -0.02 1.52 16 36 H 0.15 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.15 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.08 2.89 5.56 -2.39 -0.01 2.88 16 40 H 0.07 2.59 7.29 -2.38 -0.02 2.57 16 41 H 0.11 3.29 7.43 -2.91 -0.02 3.27 16 42 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 43 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 44 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 45 H 0.12 3.04 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -69.00 374.71 1.58 -67.42 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: 0.22 Total: 30.54 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 5.11 Total: 10.22 kcal Atomic # 7 Polarization: -92.48 SS G_CDS: -4.07 Total: -96.54 kcal Atomic # 8 Polarization: -51.86 SS G_CDS: -1.71 Total: -53.56 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.92 kcal Total: -69.00 1.58 -67.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171403406.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.528 kcal (2) G-P(sol) polarization free energy of solvation -69.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds