Wall clock time and date at job start Tue Mar 31 2020 17:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.44416 * 2 1 4 4 O 1.42997 * 109.44341 * 119.89809 * 2 1 3 5 5 C 1.35985 * 116.71878 * 166.44710 * 4 2 1 6 6 C 1.38390 * 120.67380 * 147.16331 * 5 4 2 7 7 C 1.38315 * 119.87554 * 180.12968 * 6 5 4 8 8 C 1.38281 * 120.25730 * 359.97438 * 7 6 5 9 9 C 1.38285 * 120.20277 * 359.97438 * 8 7 6 10 10 C 1.38505 * 119.80762 * 359.97438 * 9 8 7 11 11 N 1.40219 * 120.73405 * 180.02562 * 10 9 8 12 12 C 1.46506 * 120.50545 * 15.48398 * 11 10 9 13 13 C 1.50694 * 109.46953 * 90.00129 * 12 11 10 14 14 O 1.21277 * 120.00379 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99969 * 179.97438 * 13 12 11 16 16 C 1.46496 * 120.00058 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.46949 * 180.02562 * 16 15 13 18 18 C 1.53002 * 109.47055 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.46984 * 179.97438 * 18 17 16 20 20 H 1.07993 * 120.00404 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99895 * 180.02562 * 19 18 17 22 22 N 1.31523 * 120.00029 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00142 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46963 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46827 * 119.99928 * 23 21 19 26 26 H 1.48495 * 109.46942 * 240.00100 * 23 21 19 27 27 C 1.35086 * 118.98010 * 195.50233 * 11 10 9 28 28 O 1.21294 * 120.13484 * 181.64156 * 27 11 10 29 29 H 1.08994 * 109.47188 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47267 * 299.93742 * 1 2 3 31 31 H 1.09001 * 109.47220 * 59.93413 * 1 2 3 32 32 H 1.08005 * 120.06431 * 0.11158 * 6 5 4 33 33 H 1.07998 * 119.87275 * 179.71611 * 7 6 5 34 34 H 1.08003 * 119.90083 * 179.97438 * 8 7 6 35 35 H 1.08000 * 120.09514 * 180.02562 * 9 8 7 36 36 H 1.08997 * 109.46846 * 209.99825 * 12 11 10 37 37 H 1.08995 * 109.47292 * 329.99800 * 12 11 10 38 38 H 0.96999 * 119.99945 * 359.97438 * 15 13 12 39 39 H 1.09002 * 109.47406 * 299.99832 * 16 15 13 40 40 H 1.08995 * 109.47448 * 59.99953 * 16 15 13 41 41 H 1.08997 * 109.47084 * 299.99659 * 17 16 15 42 42 H 1.09002 * 109.47404 * 60.00319 * 17 16 15 43 43 H 1.09002 * 109.47530 * 299.99895 * 18 17 16 44 44 H 1.09004 * 109.47076 * 59.99937 * 18 17 16 45 45 H 0.96998 * 120.00056 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 8 2.0060 -0.6721 1.1690 5 6 3.3230 -1.0103 1.1861 6 6 4.0346 -1.0180 2.3731 7 6 5.3742 -1.3621 2.3711 8 6 6.0053 -1.6990 1.1877 9 6 5.3007 -1.6947 -0.0022 10 6 3.9587 -1.3521 -0.0064 11 7 3.2255 -1.3418 -1.2016 12 6 3.7471 -2.0044 -2.3997 13 6 3.2803 -3.4370 -2.4248 14 8 2.5813 -3.8629 -1.5299 15 7 3.6397 -4.2451 -3.4419 16 6 3.1855 -5.6377 -3.4666 17 6 3.7302 -6.3296 -4.7178 18 6 3.2564 -7.7842 -4.7433 19 6 3.7925 -8.4655 -5.9760 20 1 4.4097 -7.9162 -6.6714 21 6 3.4949 -9.7902 -6.2160 22 7 2.7436 -10.4594 -5.3689 23 14 4.1599 -10.6351 -7.7436 24 1 4.9734 -9.6713 -8.5277 25 1 5.0076 -11.7866 -7.3429 26 1 3.0280 -11.1189 -8.5741 27 6 2.0312 -0.7114 -1.2314 28 8 1.3658 -0.7150 -2.2456 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5129 0.8906 31 1 -0.3634 0.5149 -0.8894 32 1 3.5448 -0.7554 3.2992 33 1 5.9306 -1.3635 3.2967 34 1 7.0517 -1.9664 1.1927 35 1 5.7952 -1.9586 -0.9253 36 1 3.3830 -1.4881 -3.2879 37 1 4.8366 -1.9774 -2.3847 38 1 4.1984 -3.9044 -4.1579 39 1 3.5494 -6.1544 -2.5786 40 1 2.0960 -5.6643 -3.4815 41 1 3.3666 -5.8130 -5.6061 42 1 4.8198 -6.3031 -4.7024 43 1 3.6203 -8.3006 -3.8550 44 1 2.1668 -7.8112 -4.7585 45 1 2.5340 -11.3912 -5.5379 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171503908.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:45 Heat of formation + Delta-G solvation = -79.553218 kcal Electronic energy + Delta-G solvation = -27977.599619 eV Core-core repulsion = 23960.433588 eV Total energy + Delta-G solvation = -4017.166031 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.98015 -39.64396 -39.09046 -37.90226 -36.02032 -35.31230 -33.36518 -32.45769 -31.46179 -30.61133 -30.10194 -28.57456 -26.58615 -24.50847 -23.66988 -23.24111 -22.53776 -20.83015 -20.21690 -19.67294 -19.53290 -17.77412 -17.46501 -16.99714 -16.52286 -16.02914 -15.76545 -15.56911 -15.28264 -14.99196 -14.82336 -14.53859 -14.48690 -14.32126 -13.96155 -13.54433 -13.50536 -13.12371 -12.63694 -12.54007 -12.37421 -12.31622 -12.20532 -11.86411 -11.68212 -11.52072 -11.50081 -11.04680 -10.93660 -10.76149 -10.59468 -10.22444 -9.94896 -9.90101 -9.43092 -9.13335 -9.00083 -8.85898 -8.39186 -8.14897 -6.03436 -4.06726 0.76441 0.93159 1.93205 2.08787 2.62559 2.90103 3.25863 3.28793 3.36251 3.39495 3.44209 3.62263 4.24665 4.36995 4.42773 4.47934 4.58491 4.61958 4.72125 4.82854 4.89996 4.97968 5.07311 5.25653 5.32379 5.32871 5.39858 5.59757 5.67853 5.73923 5.76818 5.82420 5.97899 6.12331 6.12443 6.30631 6.40707 6.53691 6.56362 6.77965 6.96831 7.01016 7.39353 7.60038 7.61752 7.73682 7.95144 8.26637 8.36280 9.00166 9.57627 11.07917 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018050 B = 0.002225 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.888471 B =12579.290231 C =13370.706206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.084 3.916 3 H 0.103 0.897 4 O -0.300 6.300 5 C 0.083 3.917 6 C -0.109 4.109 7 C -0.113 4.113 8 C -0.109 4.109 9 C -0.126 4.126 10 C 0.106 3.894 11 N -0.533 5.533 12 C 0.087 3.913 13 C 0.492 3.508 14 O -0.528 6.528 15 N -0.722 5.722 16 C 0.118 3.882 17 C -0.120 4.120 18 C 0.023 3.977 19 C -0.522 4.522 20 H 0.056 0.944 21 C 0.056 3.944 22 N -0.893 5.893 23 Si 0.893 3.107 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.495 3.505 28 O -0.499 6.499 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.399 0.601 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.339 26.606 14.720 30.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.024 3.976 3 H 0.121 0.879 4 O -0.215 6.215 5 C 0.037 3.963 6 C -0.128 4.128 7 C -0.132 4.132 8 C -0.128 4.128 9 C -0.147 4.147 10 C 0.012 3.988 11 N -0.257 5.257 12 C -0.039 4.039 13 C 0.275 3.725 14 O -0.404 6.404 15 N -0.374 5.374 16 C -0.005 4.005 17 C -0.158 4.158 18 C -0.014 4.014 19 C -0.560 4.560 20 H 0.074 0.926 21 C -0.145 4.145 22 N -0.533 5.533 23 Si 0.721 3.279 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.210 1.210 27 C 0.284 3.716 28 O -0.372 6.372 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.156 0.844 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.140 0.860 37 H 0.134 0.866 38 H 0.233 0.767 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.158 26.083 14.899 30.325 hybrid contribution 0.759 -0.624 -1.475 1.773 sum 4.917 25.459 13.424 29.199 Atomic orbital electron populations 1.21733 0.88813 1.04799 1.03980 1.22632 0.98232 0.95841 0.80868 0.87936 1.86244 1.21582 1.74233 1.39410 1.18591 0.83396 1.01681 0.92682 1.20530 0.93582 1.02362 0.96277 1.20993 0.93724 0.99859 0.98610 1.20986 1.00298 0.99866 0.91602 1.20684 0.91275 1.03027 0.99706 1.18079 0.92546 1.03349 0.84820 1.45170 1.19509 1.51167 1.09883 1.21555 1.01194 0.92000 0.89134 1.20783 0.81284 0.87712 0.82705 1.90742 1.36961 1.75897 1.36778 1.46136 1.53401 1.12995 1.24861 1.21668 0.99674 0.78787 1.00365 1.21889 0.99987 0.99621 0.94296 1.19037 0.96857 0.88104 0.97436 1.21230 1.31607 0.95853 1.07330 0.92577 1.25042 0.95197 0.97574 0.96707 1.69979 1.37390 1.09785 1.36103 0.86520 0.78761 0.79523 0.83089 1.19754 1.20983 1.20976 1.21543 0.79993 0.79081 0.91033 1.90760 1.54239 1.59033 1.33209 0.90749 0.90126 0.88978 0.84364 0.84861 0.84980 0.85043 0.85985 0.86583 0.76735 0.91721 0.91763 0.92654 0.92670 0.96276 0.96276 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.14 37.16 0.34 -0.86 16 2 C 0.08 0.85 3.69 -27.84 -0.10 0.75 16 3 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 4 O -0.30 -3.48 10.09 -19.69 -0.20 -3.68 16 5 C 0.08 0.93 6.44 -39.09 -0.25 0.68 16 6 C -0.11 -0.95 10.00 -39.50 -0.39 -1.34 16 7 C -0.11 -0.82 10.04 -39.54 -0.40 -1.22 16 8 C -0.11 -0.82 10.04 -39.55 -0.40 -1.22 16 9 C -0.13 -1.16 9.36 -39.47 -0.37 -1.53 16 10 C 0.11 1.22 6.39 -83.49 -0.53 0.68 16 11 N -0.53 -6.63 2.21 -114.48 -0.25 -6.89 16 12 C 0.09 0.95 5.68 -5.19 -0.03 0.92 16 13 C 0.49 7.50 7.90 -10.99 -0.09 7.41 16 14 O -0.53 -10.59 16.43 5.56 0.09 -10.50 16 15 N -0.72 -10.27 5.56 -60.30 -0.33 -10.61 16 16 C 0.12 2.11 5.67 -4.04 -0.02 2.09 16 17 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 18 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 19 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 20 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 23 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 27 C 0.50 6.54 7.37 -10.80 -0.08 6.46 16 28 O -0.50 -7.75 15.83 5.54 0.09 -7.66 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.75 7.86 -51.93 -0.41 0.34 16 32 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 33 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 34 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 35 H 0.13 0.96 6.12 -52.49 -0.32 0.64 16 36 H 0.12 1.20 7.49 -51.93 -0.39 0.81 16 37 H 0.12 0.83 5.96 -51.93 -0.31 0.52 16 38 H 0.40 4.29 8.47 -40.82 -0.35 3.94 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 380.20 15.07 5.73 5.73 Total: -1.00 -36.91 380.20 -8.57 -45.48 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -6.39 Total: 0.48 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -3.02 Total: -2.62 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.15 Total: -43.74 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.02 Total: -21.84 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.91 -8.57 -45.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171503908.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.076 kcal (2) G-P(sol) polarization free energy of solvation -36.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds