Wall clock time and date at job start Tue Mar 31 2020 17:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.44416 * 2 1 4 4 O 1.42997 * 109.44341 * 119.89809 * 2 1 3 5 5 C 1.35985 * 116.71878 * 166.44710 * 4 2 1 6 6 C 1.38390 * 120.67380 * 147.16331 * 5 4 2 7 7 C 1.38315 * 119.87554 * 180.12968 * 6 5 4 8 8 C 1.38281 * 120.25730 * 359.97438 * 7 6 5 9 9 C 1.38285 * 120.20277 * 359.97438 * 8 7 6 10 10 C 1.38505 * 119.80762 * 359.97438 * 9 8 7 11 11 N 1.40219 * 120.73405 * 180.02562 * 10 9 8 12 12 C 1.46506 * 120.50545 * 15.48398 * 11 10 9 13 13 C 1.50694 * 109.46953 * 90.00129 * 12 11 10 14 14 O 1.21277 * 120.00379 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99969 * 179.97438 * 13 12 11 16 16 C 1.46496 * 120.00058 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.46949 * 180.02562 * 16 15 13 18 18 C 1.53002 * 109.47055 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.46984 * 179.97438 * 18 17 16 20 20 H 1.07993 * 120.00404 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99895 * 180.02562 * 19 18 17 22 22 N 1.31523 * 120.00029 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00142 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46963 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46827 * 119.99928 * 23 21 19 26 26 H 1.48495 * 109.46942 * 240.00100 * 23 21 19 27 27 C 1.35086 * 118.98010 * 195.50233 * 11 10 9 28 28 O 1.21294 * 120.13484 * 181.64156 * 27 11 10 29 29 H 1.08994 * 109.47188 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47267 * 299.93742 * 1 2 3 31 31 H 1.09001 * 109.47220 * 59.93413 * 1 2 3 32 32 H 1.08005 * 120.06431 * 0.11158 * 6 5 4 33 33 H 1.07998 * 119.87275 * 179.71611 * 7 6 5 34 34 H 1.08003 * 119.90083 * 179.97438 * 8 7 6 35 35 H 1.08000 * 120.09514 * 180.02562 * 9 8 7 36 36 H 1.08997 * 109.46846 * 209.99825 * 12 11 10 37 37 H 1.08995 * 109.47292 * 329.99800 * 12 11 10 38 38 H 0.96999 * 119.99945 * 359.97438 * 15 13 12 39 39 H 1.09002 * 109.47406 * 299.99832 * 16 15 13 40 40 H 1.08995 * 109.47448 * 59.99953 * 16 15 13 41 41 H 1.08997 * 109.47084 * 299.99659 * 17 16 15 42 42 H 1.09002 * 109.47404 * 60.00319 * 17 16 15 43 43 H 1.09002 * 109.47530 * 299.99895 * 18 17 16 44 44 H 1.09004 * 109.47076 * 59.99937 * 18 17 16 45 45 H 0.96998 * 120.00056 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 8 2.0060 -0.6721 1.1690 5 6 3.3230 -1.0103 1.1861 6 6 4.0346 -1.0180 2.3731 7 6 5.3742 -1.3621 2.3711 8 6 6.0053 -1.6990 1.1877 9 6 5.3007 -1.6947 -0.0022 10 6 3.9587 -1.3521 -0.0064 11 7 3.2255 -1.3418 -1.2016 12 6 3.7471 -2.0044 -2.3997 13 6 3.2803 -3.4370 -2.4248 14 8 2.5813 -3.8629 -1.5299 15 7 3.6397 -4.2451 -3.4419 16 6 3.1855 -5.6377 -3.4666 17 6 3.7302 -6.3296 -4.7178 18 6 3.2564 -7.7842 -4.7433 19 6 3.7925 -8.4655 -5.9760 20 1 4.4097 -7.9162 -6.6714 21 6 3.4949 -9.7902 -6.2160 22 7 2.7436 -10.4594 -5.3689 23 14 4.1599 -10.6351 -7.7436 24 1 4.9734 -9.6713 -8.5277 25 1 5.0076 -11.7866 -7.3429 26 1 3.0280 -11.1189 -8.5741 27 6 2.0312 -0.7114 -1.2314 28 8 1.3658 -0.7150 -2.2456 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5129 0.8906 31 1 -0.3634 0.5149 -0.8894 32 1 3.5448 -0.7554 3.2992 33 1 5.9306 -1.3635 3.2967 34 1 7.0517 -1.9664 1.1927 35 1 5.7952 -1.9586 -0.9253 36 1 3.3830 -1.4881 -3.2879 37 1 4.8366 -1.9774 -2.3847 38 1 4.1984 -3.9044 -4.1579 39 1 3.5494 -6.1544 -2.5786 40 1 2.0960 -5.6643 -3.4815 41 1 3.3666 -5.8130 -5.6061 42 1 4.8198 -6.3031 -4.7024 43 1 3.6203 -8.3006 -3.8550 44 1 2.1668 -7.8112 -4.7585 45 1 2.5340 -11.3912 -5.5379 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171503908.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:44 Heat of formation + Delta-G solvation = -104.825689 kcal Electronic energy + Delta-G solvation = -27978.695515 eV Core-core repulsion = 23960.433588 eV Total energy + Delta-G solvation = -4018.261928 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.80674 -40.80293 -39.99545 -38.69435 -37.17711 -36.60440 -35.25632 -33.24871 -33.15772 -31.30170 -31.06072 -29.53701 -28.25463 -25.61934 -24.66891 -24.39688 -23.45743 -22.39361 -21.56578 -20.49501 -20.34700 -18.79016 -18.55907 -18.27949 -17.93825 -17.13663 -16.88936 -16.60446 -16.48364 -16.29536 -15.81849 -15.75584 -15.50479 -15.40624 -14.99800 -14.70244 -14.29095 -14.26229 -13.90714 -13.79009 -13.68956 -13.34525 -13.23979 -13.06222 -12.85663 -12.78677 -12.59172 -12.37928 -12.25347 -12.17567 -11.95682 -11.72326 -11.62063 -11.26713 -11.10271 -10.90917 -10.58684 -10.22471 -9.68060 -8.92776 -8.21734 -6.33635 0.04283 0.28556 1.01305 1.29311 1.40573 1.40927 1.43387 1.54212 2.14979 2.16640 2.40911 2.70840 2.84400 3.12178 3.51880 3.61893 3.68129 3.80157 3.88560 3.98000 4.06289 4.11604 4.15312 4.27381 4.36142 4.47119 4.48948 4.57560 4.66575 4.75002 4.88425 4.90885 4.93848 5.05971 5.12853 5.22905 5.26396 5.33573 5.49079 5.51906 5.66406 5.69860 5.74865 5.81268 6.18895 6.25135 6.39311 6.53449 6.84220 7.11071 7.36348 8.90790 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018050 B = 0.002225 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.888471 B =12579.290231 C =13370.706206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.082 3.918 3 H 0.133 0.867 4 O -0.315 6.315 5 C 0.055 3.945 6 C -0.115 4.115 7 C -0.106 4.106 8 C -0.109 4.109 9 C -0.132 4.132 10 C 0.075 3.925 11 N -0.537 5.537 12 C 0.091 3.909 13 C 0.489 3.511 14 O -0.583 6.583 15 N -0.707 5.707 16 C 0.131 3.869 17 C -0.100 4.100 18 C 0.023 3.977 19 C -0.539 4.539 20 H 0.069 0.931 21 C -0.005 4.005 22 N -0.937 5.937 23 Si 0.969 3.031 24 H -0.257 1.257 25 H -0.279 1.279 26 H -0.281 1.281 27 C 0.483 3.517 28 O -0.536 6.536 29 H 0.046 0.954 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.154 0.846 33 H 0.165 0.835 34 H 0.161 0.839 35 H 0.149 0.851 36 H 0.136 0.864 37 H 0.160 0.840 38 H 0.420 0.580 39 H 0.050 0.950 40 H 0.040 0.960 41 H 0.068 0.932 42 H 0.074 0.926 43 H -0.008 1.008 44 H -0.012 1.012 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.208 28.177 14.419 32.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.023 3.977 3 H 0.150 0.850 4 O -0.230 6.230 5 C 0.009 3.991 6 C -0.134 4.134 7 C -0.124 4.124 8 C -0.127 4.127 9 C -0.152 4.152 10 C -0.018 4.018 11 N -0.261 5.261 12 C -0.034 4.034 13 C 0.275 3.725 14 O -0.462 6.462 15 N -0.360 5.360 16 C 0.007 3.993 17 C -0.137 4.137 18 C -0.015 4.015 19 C -0.577 4.577 20 H 0.087 0.913 21 C -0.203 4.203 22 N -0.577 5.577 23 Si 0.793 3.207 24 H -0.180 1.180 25 H -0.205 1.205 26 H -0.207 1.207 27 C 0.273 3.727 28 O -0.412 6.412 29 H 0.066 0.934 30 H 0.124 0.876 31 H 0.115 0.885 32 H 0.171 0.829 33 H 0.183 0.817 34 H 0.179 0.821 35 H 0.167 0.833 36 H 0.154 0.846 37 H 0.178 0.822 38 H 0.257 0.743 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.010 0.990 44 H 0.006 0.994 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.085 27.691 14.592 32.093 hybrid contribution -0.091 -1.130 -1.267 1.700 sum 6.993 26.562 13.325 30.528 Atomic orbital electron populations 1.21746 0.88247 1.03452 1.05477 1.22830 0.98690 0.96738 0.79467 0.84990 1.86206 1.22329 1.74771 1.39701 1.19010 0.83426 1.02917 0.93710 1.20867 0.94340 1.02096 0.96070 1.21433 0.93172 0.97903 0.99931 1.21410 1.01600 0.98681 0.91023 1.21019 0.90520 1.02408 1.01276 1.18396 0.93581 1.05325 0.84502 1.45277 1.19499 1.50657 1.10652 1.21719 1.03599 0.88557 0.89514 1.21607 0.80050 0.89286 0.81572 1.90722 1.39396 1.77226 1.38867 1.45868 1.53292 1.11331 1.25530 1.21216 0.98145 0.80868 0.99041 1.21591 1.00963 0.95798 0.95397 1.18955 0.94858 0.91868 0.95837 1.21702 1.31535 0.96419 1.08044 0.91318 1.26065 0.95412 0.98583 1.00229 1.70129 1.38927 1.10251 1.38414 0.85336 0.78163 0.78414 0.78743 1.18016 1.20486 1.20687 1.22159 0.80024 0.79060 0.91496 1.90723 1.55235 1.60714 1.34555 0.93435 0.87574 0.88472 0.82882 0.81744 0.82100 0.83299 0.84642 0.82247 0.74251 0.93169 0.94136 0.91346 0.90700 0.98955 0.99384 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 9.14 71.98 0.66 -1.74 16 2 C 0.08 1.68 3.69 29.87 0.11 1.79 16 3 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 4 O -0.31 -7.40 10.09 -93.38 -0.94 -8.34 16 5 C 0.06 1.22 6.44 22.58 0.15 1.36 16 6 C -0.11 -1.83 10.00 22.32 0.22 -1.60 16 7 C -0.11 -1.23 10.04 22.30 0.22 -1.00 16 8 C -0.11 -1.30 10.04 22.29 0.22 -1.08 16 9 C -0.13 -2.13 9.36 22.34 0.21 -1.92 16 10 C 0.08 1.66 6.39 38.14 0.24 1.91 16 11 N -0.54 -13.17 2.21 -634.32 -1.40 -14.57 16 12 C 0.09 1.87 5.68 85.63 0.49 2.35 16 13 C 0.49 14.78 7.90 87.65 0.69 15.47 16 14 O -0.58 -24.17 16.43 -3.02 -0.05 -24.22 16 15 N -0.71 -19.45 5.56 -463.08 -2.57 -22.02 16 16 C 0.13 4.79 5.67 86.38 0.49 5.28 16 17 C -0.10 -3.84 5.27 30.60 0.16 -3.68 16 18 C 0.02 1.19 4.97 29.85 0.15 1.34 16 19 C -0.54 -30.17 9.11 25.60 0.23 -29.94 16 20 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 21 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 22 N -0.94 -57.84 13.29 21.45 0.28 -57.55 16 23 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 24 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 25 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 26 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 27 C 0.48 13.01 7.37 87.63 0.65 13.66 16 28 O -0.54 -17.18 15.83 -3.07 -0.05 -17.23 16 29 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.10 1.63 7.86 -2.39 -0.02 1.61 16 32 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 33 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 34 H 0.16 0.97 8.06 -2.91 -0.02 0.94 16 35 H 0.15 1.70 6.12 -2.91 -0.02 1.68 16 36 H 0.14 2.45 7.49 -2.39 -0.02 2.44 16 37 H 0.16 1.78 5.96 -2.39 -0.01 1.77 16 38 H 0.42 7.99 8.47 -92.71 -0.79 7.20 16 39 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 43 H -0.01 -0.46 8.14 -2.39 -0.02 -0.47 16 44 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 45 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -84.25 380.20 2.88 -81.36 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.23 Total: 14.28 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 5.36 Total: 2.34 kcal Atomic # 7 Polarization: -90.45 SS G_CDS: -3.69 Total: -94.14 kcal Atomic # 8 Polarization: -48.75 SS G_CDS: -1.04 Total: -49.79 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -84.25 2.88 -81.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171503908.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.461 kcal (2) G-P(sol) polarization free energy of solvation -84.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds