Wall clock time and date at job start Tue Mar 31 2020 18:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47107 * 2 1 4 4 C 1.50692 * 109.47104 * 120.00441 * 2 1 3 5 5 H 1.08009 * 119.99973 * 119.99946 * 4 2 1 6 6 C 1.37873 * 120.00263 * 300.00029 * 4 2 1 7 7 N 1.31517 * 119.99690 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00252 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47315 * 89.99946 * 8 6 4 10 10 H 1.48506 * 109.47259 * 209.99728 * 8 6 4 11 11 H 1.48499 * 109.47172 * 329.99881 * 8 6 4 12 12 N 1.46502 * 109.47104 * 240.00545 * 2 1 3 13 13 C 1.34775 * 120.00287 * 84.99754 * 12 2 1 14 14 O 1.21284 * 119.99898 * 0.02562 * 13 12 2 15 15 C 1.50695 * 120.00202 * 179.97438 * 13 12 2 16 16 H 1.09002 * 109.39653 * 29.58890 * 15 13 12 17 17 C 1.53022 * 109.39631 * 269.86605 * 15 13 12 18 18 O 1.43246 * 108.66883 * 190.69928 * 17 15 13 19 19 C 1.42965 * 112.99122 * 68.36113 * 18 17 15 20 20 C 1.50364 * 109.75986 * 310.20491 * 19 18 17 21 21 O 1.21273 * 118.84798 * 196.09533 * 20 19 18 22 22 N 1.33872 * 122.31829 * 16.34095 * 20 19 18 23 23 C 1.46507 * 118.72624 * 177.88837 * 22 20 19 24 24 C 1.50703 * 109.46424 * 86.93225 * 23 22 20 25 25 C 1.38237 * 120.00158 * 84.23535 * 24 23 22 26 26 C 1.38233 * 120.00077 * 179.97438 * 25 24 23 27 27 C 1.38237 * 120.00103 * 0.02562 * 26 25 24 28 28 C 1.38241 * 119.99928 * 0.25586 * 27 26 25 29 29 C 1.38231 * 120.00025 * 264.24692 * 24 23 22 30 30 H 1.09001 * 109.46975 * 59.99421 * 1 2 3 31 31 H 1.08997 * 109.46971 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47084 * 299.99520 * 1 2 3 33 33 H 0.97002 * 119.99586 * 180.02562 * 7 6 4 34 34 H 0.97004 * 119.99636 * 265.00409 * 12 2 1 35 35 H 1.09002 * 109.60124 * 310.44742 * 17 15 13 36 36 H 1.08990 * 109.60461 * 70.77759 * 17 15 13 37 37 H 1.08996 * 109.41343 * 70.50501 * 19 18 17 38 38 H 1.08996 * 109.41810 * 190.37015 * 19 18 17 39 39 H 1.08992 * 109.47293 * 326.93437 * 23 22 20 40 40 H 1.09007 * 109.47064 * 206.92531 * 23 22 20 41 41 H 1.07995 * 120.00058 * 359.97438 * 25 24 23 42 42 H 1.08001 * 119.99842 * 179.97438 * 26 25 24 43 43 H 1.08000 * 120.00335 * 179.97438 * 27 26 25 44 44 H 1.07991 * 119.99986 * 179.72765 * 28 27 26 45 45 H 1.07998 * 119.99747 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4826 7 7 0.9436 0.8300 2.6034 8 14 2.3225 -1.1199 4.0078 9 1 3.6305 -0.5444 4.4118 10 1 1.3445 -0.9494 5.1122 11 1 2.4881 -2.5656 3.7119 12 7 2.0184 -0.6905 -1.1963 13 6 2.1471 -0.0181 -2.3572 14 8 1.8590 1.1588 -2.4115 15 6 2.6499 -0.7283 -3.5875 16 1 2.3677 -1.7800 -3.5392 17 6 4.1746 -0.6157 -3.6517 18 8 4.6141 -1.0692 -4.9375 19 6 4.2230 -0.1973 -6.0008 20 6 2.7543 0.1070 -5.8945 21 8 2.1836 0.5792 -6.8547 22 7 2.0554 -0.1205 -4.7756 23 6 0.6380 0.2489 -4.7433 24 6 -0.1899 -0.8889 -5.2828 25 6 -0.5627 -1.9278 -4.4505 26 6 -1.3226 -2.9712 -4.9453 27 6 -1.7093 -2.9759 -6.2725 28 6 -1.3317 -1.9399 -7.1062 29 6 -0.5765 -0.8937 -6.6100 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 0.7096 1.1615 3.4844 34 1 2.2490 -1.6317 -1.1527 35 1 4.4709 0.4236 -3.5096 36 1 4.6200 -1.2330 -2.8716 37 1 4.7938 0.7291 -5.9383 38 1 4.4209 -0.6809 -6.9574 39 1 0.4797 1.1360 -5.3564 40 1 0.3407 0.4593 -3.7159 41 1 -0.2602 -1.9243 -3.4138 42 1 -1.6134 -3.7830 -4.2951 43 1 -2.3027 -3.7913 -6.6591 44 1 -1.6301 -1.9458 -8.1440 45 1 -0.2847 -0.0824 -7.2603 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171720786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:46 Heat of formation + Delta-G solvation = -78.522605 kcal Electronic energy + Delta-G solvation = -29472.807713 eV Core-core repulsion = 25455.686373 eV Total energy + Delta-G solvation = -4017.121340 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.17628 -39.08957 -38.96578 -37.69876 -35.60533 -34.77306 -32.68134 -32.00685 -30.87270 -30.53517 -28.92570 -28.01974 -25.65376 -25.34416 -24.48216 -22.52993 -21.56658 -21.43772 -19.79781 -19.11114 -18.05720 -17.64631 -17.12713 -16.67345 -16.08429 -15.83730 -15.33240 -15.17609 -15.12065 -14.89658 -14.71273 -14.51090 -14.22899 -13.96338 -13.47112 -13.34269 -13.14824 -12.85719 -12.56881 -12.54742 -12.13549 -11.92045 -11.66725 -11.54054 -11.23326 -11.17877 -11.06198 -10.92379 -10.87111 -10.69818 -10.42377 -10.34318 -9.88814 -9.41311 -9.19691 -8.89985 -8.75316 -8.72551 -8.62620 -8.14961 -6.22789 -4.33067 1.26566 1.42603 2.41224 2.58212 3.10033 3.18112 3.25471 3.26555 3.38078 3.81119 3.90890 4.15295 4.27378 4.61427 4.73455 4.85078 4.88007 4.95797 5.00688 5.09237 5.10361 5.15836 5.19227 5.35710 5.40571 5.46857 5.51407 5.67735 5.84577 6.01738 6.06806 6.17031 6.46505 6.50494 6.51487 6.64884 6.67848 6.80308 6.99337 7.00816 7.21325 7.25342 7.38164 7.55849 7.75775 7.94732 8.01545 8.40911 8.60577 8.84175 9.34774 10.83020 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012769 B = 0.003719 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.357326 B = 7527.129699 C = 8821.298573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.265 3.735 3 H 0.050 0.950 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.698 5.698 13 C 0.494 3.506 14 O -0.536 6.536 15 C 0.088 3.912 16 H 0.100 0.900 17 C 0.057 3.943 18 O -0.365 6.365 19 C 0.048 3.952 20 C 0.492 3.508 21 O -0.539 6.539 22 N -0.573 5.573 23 C 0.145 3.855 24 C -0.103 4.103 25 C -0.103 4.103 26 C -0.124 4.124 27 C -0.120 4.120 28 C -0.128 4.128 29 C -0.094 4.094 30 H 0.014 0.986 31 H 0.028 0.972 32 H 0.092 0.908 33 H 0.265 0.735 34 H 0.391 0.609 35 H 0.074 0.926 36 H 0.125 0.875 37 H 0.093 0.907 38 H 0.130 0.870 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.500 -6.950 -15.270 16.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.068 0.932 4 C -0.575 4.575 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.346 5.346 13 C 0.276 3.724 14 O -0.414 6.414 15 C -0.020 4.020 16 H 0.117 0.883 17 C -0.021 4.021 18 O -0.283 6.283 19 C -0.032 4.032 20 C 0.280 3.720 21 O -0.417 6.417 22 N -0.305 5.305 23 C 0.023 3.977 24 C -0.105 4.105 25 C -0.122 4.122 26 C -0.142 4.142 27 C -0.138 4.138 28 C -0.146 4.146 29 C -0.112 4.112 30 H 0.033 0.967 31 H 0.047 0.953 32 H 0.110 0.890 33 H 0.075 0.925 34 H 0.224 0.776 35 H 0.092 0.908 36 H 0.143 0.857 37 H 0.110 0.890 38 H 0.148 0.852 39 H 0.110 0.890 40 H 0.122 0.878 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.033 -5.879 -15.644 16.744 hybrid contribution 0.162 -0.771 1.076 1.334 sum 1.194 -6.650 -14.567 16.058 Atomic orbital electron populations 1.22080 0.98192 0.99245 1.01024 1.18823 0.91150 0.94017 0.79674 0.93186 1.21173 1.32799 1.13401 0.90173 0.91938 1.24879 0.94675 0.94911 0.99108 1.69895 1.35593 1.22344 1.24063 0.86439 0.78649 0.79848 0.82124 1.20513 1.21043 1.19781 1.46633 1.63954 1.13708 1.10321 1.20235 0.79880 0.87773 0.84543 1.90714 1.50556 1.15516 1.84618 1.21849 0.95827 0.98605 0.85701 0.88266 1.22920 0.90191 1.02485 0.86504 1.88197 1.76767 1.48482 1.14807 1.22881 0.90243 0.96896 0.93132 1.20933 0.90386 0.78230 0.82478 1.90700 1.70349 1.44824 1.35845 1.47184 1.10427 1.60849 1.12018 1.20607 0.78177 0.95085 1.03785 1.20263 0.98880 0.96964 0.94344 1.21130 0.97672 0.93672 0.99678 1.21128 0.98730 0.98619 0.95682 1.21149 1.00100 0.98534 0.94026 1.21144 0.99105 0.94668 0.99642 1.21204 0.96632 0.98517 0.94856 0.96711 0.95323 0.88993 0.92454 0.77598 0.90775 0.85704 0.88968 0.85200 0.88954 0.87842 0.86086 0.86046 0.86346 0.86293 0.85545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.26 37.16 0.34 -3.03 16 2 C 0.26 6.13 2.56 -69.08 -0.18 5.95 16 3 H 0.05 1.36 7.58 -51.93 -0.39 0.96 16 4 C -0.54 -13.18 8.73 -34.45 -0.30 -13.48 16 5 H 0.06 1.45 7.74 -52.48 -0.41 1.05 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.88 -23.69 11.32 55.43 0.63 -23.06 16 8 Si 0.90 19.65 29.54 -169.99 -5.02 14.63 16 9 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 12 N -0.70 -12.54 5.07 -54.93 -0.28 -12.82 16 13 C 0.49 8.48 5.80 -10.99 -0.06 8.42 16 14 O -0.54 -11.36 14.66 5.55 0.08 -11.27 16 15 C 0.09 1.19 3.37 -69.29 -0.23 0.95 16 16 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 17 C 0.06 0.65 6.18 37.17 0.23 0.88 16 18 O -0.36 -4.16 10.85 -35.23 -0.38 -4.54 16 19 C 0.05 0.52 6.98 35.84 0.25 0.77 16 20 C 0.49 7.03 7.55 -11.55 -0.09 6.94 16 21 O -0.54 -8.90 15.59 5.56 0.09 -8.82 16 22 N -0.57 -8.33 2.55 -169.48 -0.43 -8.77 16 23 C 0.15 2.23 4.80 -5.19 -0.02 2.21 16 24 C -0.10 -1.47 5.43 -104.62 -0.57 -2.04 16 25 C -0.10 -1.38 9.73 -39.58 -0.38 -1.76 16 26 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 27 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 28 C -0.13 -1.49 10.05 -39.58 -0.40 -1.89 16 29 C -0.09 -1.26 9.35 -39.58 -0.37 -1.63 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 33 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 34 H 0.39 5.92 8.54 -40.82 -0.35 5.57 16 35 H 0.07 0.89 8.06 -51.93 -0.42 0.47 16 36 H 0.13 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.13 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.09 1.48 7.30 -51.93 -0.38 1.10 16 40 H 0.10 1.77 5.56 -51.93 -0.29 1.48 16 41 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 42 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 43 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 45 H 0.13 1.74 7.55 -52.49 -0.40 1.34 16 LS Contribution 373.85 15.07 5.63 5.63 Total: -1.00 -30.46 373.85 -8.67 -39.13 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -6.31 Total: 9.56 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -2.67 Total: 0.34 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: -0.08 Total: -44.65 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.21 Total: -24.63 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.46 -8.67 -39.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171720786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.396 kcal (2) G-P(sol) polarization free energy of solvation -30.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds