Wall clock time and date at job start Tue Mar 31 2020 18:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47107 * 2 1 4 4 C 1.50692 * 109.47104 * 120.00441 * 2 1 3 5 5 H 1.08009 * 119.99973 * 119.99946 * 4 2 1 6 6 C 1.37873 * 120.00263 * 300.00029 * 4 2 1 7 7 N 1.31517 * 119.99690 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00252 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47315 * 89.99946 * 8 6 4 10 10 H 1.48506 * 109.47259 * 209.99728 * 8 6 4 11 11 H 1.48499 * 109.47172 * 329.99881 * 8 6 4 12 12 N 1.46502 * 109.47104 * 240.00545 * 2 1 3 13 13 C 1.34775 * 120.00287 * 84.99754 * 12 2 1 14 14 O 1.21284 * 119.99898 * 0.02562 * 13 12 2 15 15 C 1.50695 * 120.00202 * 179.97438 * 13 12 2 16 16 H 1.09002 * 109.39653 * 29.58890 * 15 13 12 17 17 C 1.53022 * 109.39631 * 269.86605 * 15 13 12 18 18 O 1.43246 * 108.66883 * 190.69928 * 17 15 13 19 19 C 1.42965 * 112.99122 * 68.36113 * 18 17 15 20 20 C 1.50364 * 109.75986 * 310.20491 * 19 18 17 21 21 O 1.21273 * 118.84798 * 196.09533 * 20 19 18 22 22 N 1.33872 * 122.31829 * 16.34095 * 20 19 18 23 23 C 1.46507 * 118.72624 * 177.88837 * 22 20 19 24 24 C 1.50703 * 109.46424 * 86.93225 * 23 22 20 25 25 C 1.38237 * 120.00158 * 84.23535 * 24 23 22 26 26 C 1.38233 * 120.00077 * 179.97438 * 25 24 23 27 27 C 1.38237 * 120.00103 * 0.02562 * 26 25 24 28 28 C 1.38241 * 119.99928 * 0.25586 * 27 26 25 29 29 C 1.38231 * 120.00025 * 264.24692 * 24 23 22 30 30 H 1.09001 * 109.46975 * 59.99421 * 1 2 3 31 31 H 1.08997 * 109.46971 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47084 * 299.99520 * 1 2 3 33 33 H 0.97002 * 119.99586 * 180.02562 * 7 6 4 34 34 H 0.97004 * 119.99636 * 265.00409 * 12 2 1 35 35 H 1.09002 * 109.60124 * 310.44742 * 17 15 13 36 36 H 1.08990 * 109.60461 * 70.77759 * 17 15 13 37 37 H 1.08996 * 109.41343 * 70.50501 * 19 18 17 38 38 H 1.08996 * 109.41810 * 190.37015 * 19 18 17 39 39 H 1.08992 * 109.47293 * 326.93437 * 23 22 20 40 40 H 1.09007 * 109.47064 * 206.92531 * 23 22 20 41 41 H 1.07995 * 120.00058 * 359.97438 * 25 24 23 42 42 H 1.08001 * 119.99842 * 179.97438 * 26 25 24 43 43 H 1.08000 * 120.00335 * 179.97438 * 27 26 25 44 44 H 1.07991 * 119.99986 * 179.72765 * 28 27 26 45 45 H 1.07998 * 119.99747 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4826 7 7 0.9436 0.8300 2.6034 8 14 2.3225 -1.1199 4.0078 9 1 3.6305 -0.5444 4.4118 10 1 1.3445 -0.9494 5.1122 11 1 2.4881 -2.5656 3.7119 12 7 2.0184 -0.6905 -1.1963 13 6 2.1471 -0.0181 -2.3572 14 8 1.8590 1.1588 -2.4115 15 6 2.6499 -0.7283 -3.5875 16 1 2.3677 -1.7800 -3.5392 17 6 4.1746 -0.6157 -3.6517 18 8 4.6141 -1.0692 -4.9375 19 6 4.2230 -0.1973 -6.0008 20 6 2.7543 0.1070 -5.8945 21 8 2.1836 0.5792 -6.8547 22 7 2.0554 -0.1205 -4.7756 23 6 0.6380 0.2489 -4.7433 24 6 -0.1899 -0.8889 -5.2828 25 6 -0.5627 -1.9278 -4.4505 26 6 -1.3226 -2.9712 -4.9453 27 6 -1.7093 -2.9759 -6.2725 28 6 -1.3317 -1.9399 -7.1062 29 6 -0.5765 -0.8937 -6.6100 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 0.7096 1.1615 3.4844 34 1 2.2490 -1.6317 -1.1527 35 1 4.4709 0.4236 -3.5096 36 1 4.6200 -1.2330 -2.8716 37 1 4.7938 0.7291 -5.9383 38 1 4.4209 -0.6809 -6.9574 39 1 0.4797 1.1360 -5.3564 40 1 0.3407 0.4593 -3.7159 41 1 -0.2602 -1.9243 -3.4138 42 1 -1.6134 -3.7830 -4.2951 43 1 -2.3027 -3.7913 -6.6591 44 1 -1.6301 -1.9458 -8.1440 45 1 -0.2847 -0.0824 -7.2603 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171720786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:45 Heat of formation + Delta-G solvation = -98.349482 kcal Electronic energy + Delta-G solvation = -29473.667471 eV Core-core repulsion = 25455.686373 eV Total energy + Delta-G solvation = -4017.981098 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.32463 -40.42323 -40.02048 -38.74025 -37.03175 -36.26501 -34.41336 -33.13861 -31.84044 -31.76860 -30.44435 -29.07989 -27.34132 -26.73127 -25.55111 -23.53761 -23.17046 -22.42613 -21.41480 -20.23265 -19.40050 -18.81105 -18.21023 -17.94252 -17.48840 -17.13977 -16.73572 -16.31070 -16.19764 -16.07368 -15.88310 -15.76819 -15.60863 -15.15208 -14.72520 -14.49423 -14.39904 -14.26544 -13.96582 -13.68565 -13.52934 -13.19492 -13.00722 -12.91436 -12.79908 -12.67951 -12.54543 -12.26620 -12.19539 -12.11640 -11.91023 -11.68940 -11.21328 -11.10394 -10.61490 -10.56696 -9.96091 -9.86446 -9.80742 -9.72259 -8.16182 -6.33210 0.28818 0.45998 1.29678 1.36583 1.47657 1.48691 1.58413 1.85287 2.17701 2.45094 2.75418 2.89427 3.10788 3.15525 3.55557 3.71830 3.76988 3.84835 3.87082 4.11172 4.11724 4.20308 4.26108 4.37306 4.47286 4.52887 4.59437 4.66223 4.70943 4.75894 4.91420 4.99682 5.03974 5.09621 5.12363 5.41387 5.52662 5.56857 5.57106 5.57782 5.65267 5.67606 5.87894 6.06673 6.09777 6.16599 6.73482 6.79023 6.88028 7.29933 7.45055 8.89793 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012769 B = 0.003719 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.357326 B = 7527.129699 C = 8821.298573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.273 3.727 3 H 0.002 0.998 4 C -0.543 4.543 5 H 0.079 0.921 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.968 3.032 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.257 1.257 12 N -0.690 5.690 13 C 0.499 3.501 14 O -0.580 6.580 15 C 0.099 3.901 16 H 0.124 0.876 17 C 0.059 3.941 18 O -0.359 6.359 19 C 0.052 3.948 20 C 0.484 3.516 21 O -0.568 6.568 22 N -0.578 5.578 23 C 0.152 3.848 24 C -0.117 4.117 25 C -0.116 4.116 26 C -0.124 4.124 27 C -0.116 4.116 28 C -0.127 4.127 29 C -0.109 4.109 30 H 0.010 0.990 31 H 0.042 0.958 32 H 0.064 0.936 33 H 0.264 0.736 34 H 0.409 0.591 35 H 0.067 0.933 36 H 0.153 0.847 37 H 0.112 0.888 38 H 0.154 0.846 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.116 0.884 42 H 0.144 0.856 43 H 0.151 0.849 44 H 0.143 0.857 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.475 -10.150 -16.045 19.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.170 3.830 3 H 0.020 0.980 4 C -0.581 4.581 5 H 0.097 0.903 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.793 3.207 9 H -0.205 1.205 10 H -0.215 1.215 11 H -0.181 1.181 12 N -0.340 5.340 13 C 0.283 3.717 14 O -0.460 6.460 15 C -0.009 4.009 16 H 0.142 0.858 17 C -0.018 4.018 18 O -0.277 6.277 19 C -0.027 4.027 20 C 0.273 3.727 21 O -0.447 6.447 22 N -0.310 5.310 23 C 0.030 3.970 24 C -0.118 4.118 25 C -0.135 4.135 26 C -0.142 4.142 27 C -0.134 4.134 28 C -0.145 4.145 29 C -0.128 4.128 30 H 0.029 0.971 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.245 0.755 35 H 0.085 0.915 36 H 0.170 0.830 37 H 0.129 0.871 38 H 0.172 0.828 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.134 0.866 42 H 0.162 0.838 43 H 0.168 0.832 44 H 0.160 0.840 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.035 -9.126 -16.438 18.912 hybrid contribution -0.193 0.273 1.246 1.291 sum 1.842 -8.853 -15.192 17.679 Atomic orbital electron populations 1.21891 0.98304 0.99547 0.99461 1.18362 0.90995 0.92040 0.81594 0.98020 1.21539 1.32475 1.13623 0.90484 0.90306 1.25748 0.94864 0.95521 1.02270 1.70054 1.37055 1.23998 1.24522 0.85396 0.77646 0.79394 0.78218 1.20483 1.21485 1.18132 1.46275 1.64017 1.14397 1.09279 1.20818 0.78507 0.87176 0.85177 1.90702 1.52177 1.17788 1.85336 1.21894 0.97158 0.98800 0.83045 0.85844 1.23009 0.88405 1.02901 0.87500 1.88218 1.76252 1.48559 1.14624 1.23041 0.87511 0.98118 0.94008 1.21688 0.91754 0.77473 0.81800 1.90685 1.71217 1.46083 1.36754 1.47327 1.10151 1.60903 1.12579 1.20352 0.79440 0.95373 1.01853 1.20165 0.99658 0.96975 0.94984 1.21164 0.98699 0.94236 0.99389 1.21434 0.97766 0.98465 0.96509 1.21530 0.99420 0.98887 0.93523 1.21444 0.98083 0.93982 1.00997 1.21206 0.97799 0.99229 0.94524 0.97075 0.93885 0.91711 0.92687 0.75486 0.91485 0.82992 0.87080 0.82820 0.90812 0.90253 0.86598 0.83812 0.83164 0.83960 0.86721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.31 9.26 71.98 0.67 -5.64 16 2 C 0.27 12.94 2.56 44.24 0.11 13.05 16 3 H 0.00 0.11 7.58 -2.39 -0.02 0.09 16 4 C -0.54 -26.42 8.73 25.60 0.22 -26.20 16 5 H 0.08 3.50 7.74 -2.91 -0.02 3.48 16 6 C 0.02 0.82 5.30 84.65 0.45 1.27 16 7 N -0.92 -50.56 11.32 21.45 0.24 -50.32 16 8 Si 0.97 39.83 29.54 68.60 2.03 41.85 16 9 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16 10 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 12 N -0.69 -24.61 5.07 -446.10 -2.26 -26.87 16 13 C 0.50 17.31 5.80 87.66 0.51 17.82 16 14 O -0.58 -25.72 14.66 -3.04 -0.04 -25.76 16 15 C 0.10 2.54 3.37 44.33 0.15 2.69 16 16 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 17 C 0.06 1.23 6.18 71.99 0.45 1.68 16 18 O -0.36 -7.13 10.85 -148.98 -1.62 -8.75 16 19 C 0.05 1.01 6.98 71.13 0.50 1.51 16 20 C 0.48 13.60 7.55 87.69 0.66 14.26 16 21 O -0.57 -18.99 15.59 -3.01 -0.05 -19.04 16 22 N -0.58 -16.88 2.55 -809.02 -2.06 -18.94 16 23 C 0.15 4.93 4.80 85.63 0.41 5.34 16 24 C -0.12 -3.37 5.43 -19.87 -0.11 -3.48 16 25 C -0.12 -3.04 9.73 22.27 0.22 -2.82 16 26 C -0.12 -2.64 10.05 22.27 0.22 -2.42 16 27 C -0.12 -2.22 10.05 22.27 0.22 -2.00 16 28 C -0.13 -2.74 10.05 22.27 0.22 -2.52 16 29 C -0.11 -2.95 9.35 22.27 0.21 -2.74 16 30 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.06 3.44 6.07 -2.39 -0.01 3.42 16 33 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 34 H 0.41 11.64 8.54 -92.71 -0.79 10.85 16 35 H 0.07 1.52 8.06 -2.39 -0.02 1.50 16 36 H 0.15 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.15 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.07 2.58 7.30 -2.39 -0.02 2.57 16 40 H 0.08 2.92 5.56 -2.38 -0.01 2.91 16 41 H 0.12 3.06 8.06 -2.91 -0.02 3.04 16 42 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 43 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 44 H 0.14 2.33 8.06 -2.92 -0.02 2.31 16 45 H 0.11 3.30 7.55 -2.91 -0.02 3.27 16 Total: -1.00 -68.63 373.85 1.57 -67.06 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 0.22 Total: 30.97 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 5.11 Total: 9.81 kcal Atomic # 7 Polarization: -92.05 SS G_CDS: -4.08 Total: -96.14 kcal Atomic # 8 Polarization: -51.84 SS G_CDS: -1.71 Total: -53.55 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.85 kcal Total: -68.63 1.57 -67.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171720786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.290 kcal (2) G-P(sol) polarization free energy of solvation -68.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds