Wall clock time and date at job start Tue Mar 31 2020 18:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47295 * 2 1 4 4 C 1.50703 * 109.47386 * 239.99971 * 2 1 3 5 5 H 1.07998 * 120.00246 * 240.00490 * 4 2 1 6 6 C 1.37879 * 119.99709 * 59.99626 * 4 2 1 7 7 N 1.31510 * 120.00176 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99677 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47063 * 90.00511 * 8 6 4 10 10 H 1.48506 * 109.47008 * 210.00430 * 8 6 4 11 11 H 1.48495 * 109.47431 * 330.00305 * 8 6 4 12 12 N 1.46502 * 109.47129 * 120.00359 * 2 1 3 13 13 C 1.34779 * 119.99623 * 274.99973 * 12 2 1 14 14 O 1.21289 * 120.00142 * 359.97438 * 13 12 2 15 15 C 1.50698 * 120.00018 * 179.97438 * 13 12 2 16 16 H 1.08998 * 109.39481 * 29.62199 * 15 13 12 17 17 C 1.53020 * 109.32387 * 269.85045 * 15 13 12 18 18 O 1.43241 * 108.67079 * 190.74478 * 17 15 13 19 19 C 1.42964 * 112.98917 * 68.36323 * 18 17 15 20 20 C 1.50361 * 109.75805 * 310.20483 * 19 18 17 21 21 O 1.21290 * 118.84292 * 196.09979 * 20 19 18 22 22 N 1.33872 * 122.32393 * 16.34141 * 20 19 18 23 23 C 1.46503 * 118.73036 * 177.89159 * 22 20 19 24 24 C 1.50698 * 109.46595 * 87.03993 * 23 22 20 25 25 C 1.38235 * 120.00114 * 84.25566 * 24 23 22 26 26 C 1.38244 * 120.00014 * 179.97438 * 25 24 23 27 27 C 1.38233 * 119.99719 * 0.02562 * 26 25 24 28 28 C 1.38230 * 120.00270 * 0.25154 * 27 26 25 29 29 C 1.38230 * 120.00091 * 359.49578 * 28 27 26 30 30 H 1.09005 * 109.47144 * 60.00353 * 1 2 3 31 31 H 1.09002 * 109.46695 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47463 * 299.99848 * 1 2 3 33 33 H 0.97003 * 120.00125 * 180.02562 * 7 6 4 34 34 H 0.96994 * 120.00491 * 94.99430 * 12 2 1 35 35 H 1.09002 * 109.60165 * 310.50390 * 17 15 13 36 36 H 1.09004 * 109.60143 * 70.82373 * 17 15 13 37 37 H 1.09006 * 109.41827 * 70.50318 * 19 18 17 38 38 H 1.08998 * 109.41502 * 190.36549 * 19 18 17 39 39 H 1.08998 * 109.46697 * 327.04351 * 23 22 20 40 40 H 1.08994 * 109.47147 * 207.03771 * 23 22 20 41 41 H 1.07996 * 119.99927 * 359.97438 * 25 24 23 42 42 H 1.08001 * 119.99858 * 179.97438 * 26 25 24 43 43 H 1.08007 * 119.99491 * 179.97438 * 27 26 25 44 44 H 1.08005 * 119.99722 * 179.72572 * 28 27 26 45 45 H 1.07997 * 120.00386 * 180.25008 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3428 -2.1617 -4.4119 10 1 2.4867 -0.1414 -5.1123 11 1 3.6293 -1.7583 -3.7122 12 7 2.0183 -0.6907 1.1961 13 6 2.1470 -0.0183 2.3571 14 8 1.8590 1.1586 2.4115 15 6 2.6488 -0.7288 3.5877 16 1 3.3200 -1.5351 3.2918 17 6 1.4607 -1.3126 4.3552 18 8 1.9179 -1.7606 5.6366 19 6 2.3081 -0.6873 6.4967 20 6 3.2451 0.2344 5.7665 21 8 3.9068 1.0236 6.4070 22 7 3.3714 0.2179 4.4338 23 6 4.2735 1.1826 3.7999 24 6 5.6689 0.6150 3.7613 25 6 6.0427 -0.2313 2.7341 26 6 7.3230 -0.7516 2.6985 27 6 8.2292 -0.4260 3.6902 28 6 7.8537 0.4157 4.7205 29 6 6.5752 0.9401 4.7534 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 0.7088 1.1613 -3.4844 34 1 2.2490 -1.6318 1.1526 35 1 0.6977 -0.5453 4.4868 36 1 1.0430 -2.1520 3.7992 37 1 1.4227 -0.1346 6.8110 38 1 2.8133 -1.0914 7.3740 39 1 4.2742 2.1099 4.3727 40 1 3.9347 1.3834 2.7836 41 1 5.3346 -0.4859 1.9596 42 1 7.6149 -1.4130 1.8962 43 1 9.2294 -0.8328 3.6626 44 1 8.5604 0.6665 5.4977 45 1 6.2830 1.6009 5.5561 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171720788.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:50 Heat of formation + Delta-G solvation = -78.500706 kcal Electronic energy + Delta-G solvation = -29459.078498 eV Core-core repulsion = 25441.958107 eV Total energy + Delta-G solvation = -4017.120391 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.17171 -39.06643 -38.95700 -37.69977 -35.60550 -34.76614 -32.67901 -31.98567 -30.83648 -30.52702 -28.93771 -28.02816 -25.61019 -25.35324 -24.47624 -22.50110 -21.58691 -21.40619 -19.78232 -19.11635 -18.03284 -17.64441 -17.12285 -16.65439 -16.09685 -15.87872 -15.32715 -15.19081 -15.08404 -14.87187 -14.63681 -14.53803 -14.24941 -13.87016 -13.50481 -13.31932 -13.16351 -12.84032 -12.54423 -12.50223 -12.12719 -11.99444 -11.62711 -11.53167 -11.22076 -11.19575 -11.03263 -10.90881 -10.83924 -10.70381 -10.44083 -10.34180 -9.88561 -9.40870 -9.18035 -8.86376 -8.71767 -8.70005 -8.67554 -8.13679 -6.22693 -4.32913 1.29740 1.46172 2.41590 2.58554 3.10751 3.18076 3.25368 3.26726 3.37306 3.82733 3.92052 4.15467 4.27338 4.60729 4.73411 4.87184 4.91158 4.95347 5.04154 5.09066 5.10667 5.18479 5.19423 5.36714 5.40260 5.45569 5.54923 5.71102 5.87359 6.04893 6.10124 6.18481 6.49661 6.51069 6.54111 6.67695 6.68084 6.79824 6.99331 7.04274 7.21840 7.25570 7.38362 7.55918 7.75762 7.95264 8.01493 8.40904 8.60646 8.84239 9.34923 10.83098 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011271 B = 0.004059 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.573745 B = 6897.026359 C = 8585.178127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.265 3.735 3 H 0.050 0.950 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.698 5.698 13 C 0.493 3.507 14 O -0.536 6.536 15 C 0.088 3.912 16 H 0.100 0.900 17 C 0.057 3.943 18 O -0.365 6.365 19 C 0.048 3.952 20 C 0.492 3.508 21 O -0.539 6.539 22 N -0.572 5.572 23 C 0.145 3.855 24 C -0.104 4.104 25 C -0.102 4.102 26 C -0.123 4.123 27 C -0.120 4.120 28 C -0.128 4.128 29 C -0.094 4.094 30 H 0.091 0.909 31 H 0.028 0.972 32 H 0.014 0.986 33 H 0.265 0.735 34 H 0.391 0.609 35 H 0.073 0.927 36 H 0.124 0.876 37 H 0.092 0.908 38 H 0.130 0.870 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.499 -5.671 13.945 16.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.164 3.836 3 H 0.068 0.932 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.135 4.135 7 N -0.519 5.519 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.346 5.346 13 C 0.276 3.724 14 O -0.414 6.414 15 C -0.020 4.020 16 H 0.118 0.882 17 C -0.021 4.021 18 O -0.283 6.283 19 C -0.031 4.031 20 C 0.279 3.721 21 O -0.417 6.417 22 N -0.304 5.304 23 C 0.023 3.977 24 C -0.105 4.105 25 C -0.121 4.121 26 C -0.141 4.141 27 C -0.138 4.138 28 C -0.146 4.146 29 C -0.113 4.113 30 H 0.110 0.890 31 H 0.047 0.953 32 H 0.033 0.967 33 H 0.075 0.925 34 H 0.224 0.776 35 H 0.092 0.908 36 H 0.142 0.858 37 H 0.110 0.890 38 H 0.148 0.852 39 H 0.111 0.889 40 H 0.122 0.878 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.514 -4.471 14.195 16.246 hybrid contribution 0.410 -0.715 -1.149 1.414 sum 6.924 -5.187 13.046 15.654 Atomic orbital electron populations 1.22088 0.98230 0.99268 1.01048 1.18822 0.91165 0.93989 0.79668 0.93209 1.21165 1.32803 1.13366 0.90153 0.91969 1.24873 0.94705 0.94870 0.99093 1.69889 1.35652 1.22288 1.24065 0.86446 0.79201 0.79298 0.82161 1.20489 1.21037 1.19810 1.46632 1.64102 1.13694 1.10189 1.20243 0.79771 0.87875 0.84551 1.90716 1.50357 1.15574 1.84758 1.21852 0.95954 0.92391 0.91808 0.88218 1.22910 0.93637 1.01447 0.84071 1.88195 1.84531 1.30689 1.24836 1.22882 0.97706 0.88599 0.93947 1.20929 0.83831 0.85056 0.82249 1.90706 1.45844 1.40028 1.65135 1.47180 1.42875 1.34851 1.05533 1.20610 0.84750 0.91513 1.00780 1.20256 0.96060 0.98650 0.95516 1.21161 0.96568 0.96507 0.97855 1.21137 0.93703 1.00359 0.98925 1.21146 0.99372 0.98433 0.94869 1.21133 0.96438 0.98357 0.98685 1.21199 0.93053 0.99220 0.97780 0.89007 0.95291 0.96659 0.92454 0.77602 0.90827 0.85813 0.88987 0.85189 0.88945 0.87795 0.85932 0.86024 0.86369 0.86326 0.85576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.26 37.16 0.34 -3.04 16 2 C 0.26 6.13 2.56 -69.08 -0.18 5.95 16 3 H 0.05 1.35 7.58 -51.93 -0.39 0.96 16 4 C -0.54 -13.17 8.73 -34.44 -0.30 -13.47 16 5 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.88 -23.69 11.32 55.43 0.63 -23.06 16 8 Si 0.90 19.70 29.54 -169.99 -5.02 14.68 16 9 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 12 N -0.70 -12.52 5.07 -54.93 -0.28 -12.80 16 13 C 0.49 8.47 5.79 -10.99 -0.06 8.40 16 14 O -0.54 -11.34 14.65 5.55 0.08 -11.26 16 15 C 0.09 1.18 3.38 -69.29 -0.23 0.95 16 16 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 17 C 0.06 0.64 6.18 37.17 0.23 0.87 16 18 O -0.36 -4.11 10.85 -35.23 -0.38 -4.49 16 19 C 0.05 0.52 6.98 35.84 0.25 0.77 16 20 C 0.49 7.03 7.56 -11.55 -0.09 6.95 16 21 O -0.54 -8.94 15.60 5.55 0.09 -8.85 16 22 N -0.57 -8.38 2.55 -169.49 -0.43 -8.81 16 23 C 0.14 2.27 4.80 -5.19 -0.02 2.24 16 24 C -0.10 -1.51 5.43 -104.62 -0.57 -2.08 16 25 C -0.10 -1.42 9.73 -39.58 -0.38 -1.81 16 26 C -0.12 -1.52 10.05 -39.58 -0.40 -1.92 16 27 C -0.12 -1.38 10.05 -39.59 -0.40 -1.78 16 28 C -0.13 -1.54 10.05 -39.59 -0.40 -1.94 16 29 C -0.09 -1.30 9.36 -39.58 -0.37 -1.67 16 30 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 34 H 0.39 5.90 8.54 -40.82 -0.35 5.55 16 35 H 0.07 0.86 8.06 -51.93 -0.42 0.45 16 36 H 0.12 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.13 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.09 1.50 7.29 -51.93 -0.38 1.12 16 40 H 0.10 1.82 5.56 -51.93 -0.29 1.53 16 41 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 43 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 44 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 45 H 0.13 1.77 7.55 -52.49 -0.40 1.37 16 LS Contribution 373.88 15.07 5.63 5.63 Total: -1.00 -30.48 373.88 -8.67 -39.15 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -6.31 Total: 9.72 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -2.67 Total: 0.09 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: -0.08 Total: -44.67 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.21 Total: -24.60 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.48 -8.67 -39.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171720788.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.350 kcal (2) G-P(sol) polarization free energy of solvation -30.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds