Wall clock time and date at job start Tue Mar 31 2020 18:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47295 * 2 1 4 4 C 1.50703 * 109.47386 * 239.99971 * 2 1 3 5 5 H 1.07998 * 120.00246 * 240.00490 * 4 2 1 6 6 C 1.37879 * 119.99709 * 59.99626 * 4 2 1 7 7 N 1.31510 * 120.00176 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99677 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47063 * 90.00511 * 8 6 4 10 10 H 1.48506 * 109.47008 * 210.00430 * 8 6 4 11 11 H 1.48495 * 109.47431 * 330.00305 * 8 6 4 12 12 N 1.46502 * 109.47129 * 120.00359 * 2 1 3 13 13 C 1.34779 * 119.99623 * 274.99973 * 12 2 1 14 14 O 1.21289 * 120.00142 * 359.97438 * 13 12 2 15 15 C 1.50698 * 120.00018 * 179.97438 * 13 12 2 16 16 H 1.08998 * 109.39481 * 29.62199 * 15 13 12 17 17 C 1.53020 * 109.32387 * 269.85045 * 15 13 12 18 18 O 1.43241 * 108.67079 * 190.74478 * 17 15 13 19 19 C 1.42964 * 112.98917 * 68.36323 * 18 17 15 20 20 C 1.50361 * 109.75805 * 310.20483 * 19 18 17 21 21 O 1.21290 * 118.84292 * 196.09979 * 20 19 18 22 22 N 1.33872 * 122.32393 * 16.34141 * 20 19 18 23 23 C 1.46503 * 118.73036 * 177.89159 * 22 20 19 24 24 C 1.50698 * 109.46595 * 87.03993 * 23 22 20 25 25 C 1.38235 * 120.00114 * 84.25566 * 24 23 22 26 26 C 1.38244 * 120.00014 * 179.97438 * 25 24 23 27 27 C 1.38233 * 119.99719 * 0.02562 * 26 25 24 28 28 C 1.38230 * 120.00270 * 0.25154 * 27 26 25 29 29 C 1.38230 * 120.00091 * 359.49578 * 28 27 26 30 30 H 1.09005 * 109.47144 * 60.00353 * 1 2 3 31 31 H 1.09002 * 109.46695 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47463 * 299.99848 * 1 2 3 33 33 H 0.97003 * 120.00125 * 180.02562 * 7 6 4 34 34 H 0.96994 * 120.00491 * 94.99430 * 12 2 1 35 35 H 1.09002 * 109.60165 * 310.50390 * 17 15 13 36 36 H 1.09004 * 109.60143 * 70.82373 * 17 15 13 37 37 H 1.09006 * 109.41827 * 70.50318 * 19 18 17 38 38 H 1.08998 * 109.41502 * 190.36549 * 19 18 17 39 39 H 1.08998 * 109.46697 * 327.04351 * 23 22 20 40 40 H 1.08994 * 109.47147 * 207.03771 * 23 22 20 41 41 H 1.07996 * 119.99927 * 359.97438 * 25 24 23 42 42 H 1.08001 * 119.99858 * 179.97438 * 26 25 24 43 43 H 1.08007 * 119.99491 * 179.97438 * 27 26 25 44 44 H 1.08005 * 119.99722 * 179.72572 * 28 27 26 45 45 H 1.07997 * 120.00386 * 180.25008 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3428 -2.1617 -4.4119 10 1 2.4867 -0.1414 -5.1123 11 1 3.6293 -1.7583 -3.7122 12 7 2.0183 -0.6907 1.1961 13 6 2.1470 -0.0183 2.3571 14 8 1.8590 1.1586 2.4115 15 6 2.6488 -0.7288 3.5877 16 1 3.3200 -1.5351 3.2918 17 6 1.4607 -1.3126 4.3552 18 8 1.9179 -1.7606 5.6366 19 6 2.3081 -0.6873 6.4967 20 6 3.2451 0.2344 5.7665 21 8 3.9068 1.0236 6.4070 22 7 3.3714 0.2179 4.4338 23 6 4.2735 1.1826 3.7999 24 6 5.6689 0.6150 3.7613 25 6 6.0427 -0.2313 2.7341 26 6 7.3230 -0.7516 2.6985 27 6 8.2292 -0.4260 3.6902 28 6 7.8537 0.4157 4.7205 29 6 6.5752 0.9401 4.7534 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 0.7088 1.1613 -3.4844 34 1 2.2490 -1.6318 1.1526 35 1 0.6977 -0.5453 4.4868 36 1 1.0430 -2.1520 3.7992 37 1 1.4227 -0.1346 6.8110 38 1 2.8133 -1.0914 7.3740 39 1 4.2742 2.1099 4.3727 40 1 3.9347 1.3834 2.7836 41 1 5.3346 -0.4859 1.9596 42 1 7.6149 -1.4130 1.8962 43 1 9.2294 -0.8328 3.6626 44 1 8.5604 0.6665 5.4977 45 1 6.2830 1.6009 5.5561 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171720788.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:49 Heat of formation + Delta-G solvation = -98.387881 kcal Electronic energy + Delta-G solvation = -29459.940871 eV Core-core repulsion = 25441.958107 eV Total energy + Delta-G solvation = -4017.982763 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.32196 -40.42060 -40.02241 -38.73595 -37.03641 -36.25998 -34.41643 -33.13305 -31.84631 -31.75883 -30.45533 -29.08967 -27.32222 -26.72610 -25.53493 -23.55917 -23.17949 -22.42723 -21.39537 -20.24027 -19.37720 -18.80702 -18.20477 -17.96097 -17.49440 -17.21512 -16.71284 -16.31972 -16.20888 -16.00430 -15.84618 -15.76926 -15.64615 -15.09328 -14.77169 -14.52509 -14.37764 -14.27437 -13.93648 -13.69439 -13.53732 -13.22291 -12.99178 -12.95213 -12.74186 -12.66329 -12.54175 -12.26927 -12.20314 -12.13983 -11.91290 -11.68679 -11.21158 -11.09267 -10.62998 -10.54946 -9.99661 -9.86841 -9.77653 -9.72587 -8.16659 -6.33521 0.28496 0.45575 1.29643 1.36599 1.46575 1.47884 1.57189 1.85813 2.17493 2.44595 2.75469 2.89162 3.10813 3.15093 3.55642 3.71795 3.77425 3.84575 3.87099 4.11154 4.11660 4.20276 4.25778 4.37446 4.47462 4.52844 4.59098 4.66153 4.70760 4.77415 4.93346 4.99234 5.03591 5.10506 5.12000 5.42322 5.52460 5.56610 5.57052 5.57711 5.65066 5.68372 5.88694 6.06344 6.10524 6.17068 6.73053 6.79089 6.88172 7.29764 7.44893 8.89201 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011271 B = 0.004059 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.573745 B = 6897.026359 C = 8585.178127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.273 3.727 3 H -0.001 1.001 4 C -0.543 4.543 5 H 0.076 0.924 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.967 3.033 9 H -0.272 1.272 10 H -0.291 1.291 11 H -0.263 1.263 12 N -0.690 5.690 13 C 0.499 3.501 14 O -0.580 6.580 15 C 0.098 3.902 16 H 0.122 0.878 17 C 0.060 3.940 18 O -0.359 6.359 19 C 0.053 3.947 20 C 0.483 3.517 21 O -0.568 6.568 22 N -0.578 5.578 23 C 0.152 3.848 24 C -0.116 4.116 25 C -0.117 4.117 26 C -0.124 4.124 27 C -0.115 4.115 28 C -0.127 4.127 29 C -0.109 4.109 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.014 0.986 33 H 0.264 0.736 34 H 0.409 0.591 35 H 0.068 0.932 36 H 0.154 0.846 37 H 0.112 0.888 38 H 0.154 0.846 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.114 0.886 42 H 0.143 0.857 43 H 0.151 0.849 44 H 0.144 0.856 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.846 -8.704 14.734 18.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.170 3.830 3 H 0.017 0.983 4 C -0.581 4.581 5 H 0.095 0.905 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.792 3.208 9 H -0.197 1.197 10 H -0.217 1.217 11 H -0.187 1.187 12 N -0.340 5.340 13 C 0.283 3.717 14 O -0.460 6.460 15 C -0.010 4.010 16 H 0.140 0.860 17 C -0.017 4.017 18 O -0.277 6.277 19 C -0.026 4.026 20 C 0.273 3.727 21 O -0.448 6.448 22 N -0.309 5.309 23 C 0.030 3.970 24 C -0.118 4.118 25 C -0.136 4.136 26 C -0.142 4.142 27 C -0.133 4.133 28 C -0.144 4.144 29 C -0.127 4.127 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.033 0.967 33 H 0.073 0.927 34 H 0.245 0.755 35 H 0.087 0.913 36 H 0.171 0.829 37 H 0.130 0.870 38 H 0.172 0.828 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.132 0.868 42 H 0.161 0.839 43 H 0.169 0.831 44 H 0.161 0.839 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.866 -7.558 15.008 18.554 hybrid contribution 0.037 0.302 -1.350 1.384 sum 7.904 -7.257 13.659 17.369 Atomic orbital electron populations 1.21901 0.98027 0.99788 0.99628 1.18363 0.91238 0.91864 0.81538 0.98288 1.21520 1.32485 1.13529 0.90548 0.90543 1.25727 0.94908 0.95483 1.02203 1.70046 1.37078 1.23903 1.24515 0.85415 0.79074 0.78031 0.78250 1.19694 1.21723 1.18724 1.46276 1.64174 1.14387 1.09146 1.20825 0.78365 0.87270 0.85222 1.90703 1.51985 1.17789 1.85526 1.21908 0.97226 0.91823 0.90004 0.86010 1.23017 0.92143 1.02328 0.84247 1.88216 1.84311 1.30574 1.24551 1.23040 0.97676 0.88122 0.93778 1.21712 0.83887 0.85248 0.81893 1.90690 1.47098 1.41418 1.65577 1.47321 1.42729 1.34812 1.06070 1.20340 0.86166 0.91633 0.98876 1.20164 0.95446 0.99609 0.96540 1.21172 0.97559 0.97240 0.97617 1.21429 0.92956 1.00132 0.99695 1.21526 1.00558 0.97448 0.93803 1.21443 0.95859 0.97683 0.99457 1.21210 0.94067 0.99861 0.97598 0.91768 0.93587 0.96710 0.92677 0.75505 0.91346 0.82884 0.86997 0.82838 0.90712 0.90440 0.86773 0.83945 0.83128 0.83861 0.86615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.27 9.26 71.98 0.67 -5.61 16 2 C 0.27 12.95 2.56 44.25 0.11 13.06 16 3 H 0.00 -0.04 7.58 -2.39 -0.02 -0.06 16 4 C -0.54 -26.57 8.73 25.60 0.22 -26.35 16 5 H 0.08 3.45 7.74 -2.91 -0.02 3.42 16 6 C 0.02 0.87 5.30 84.66 0.45 1.32 16 7 N -0.92 -50.58 11.32 21.45 0.24 -50.34 16 8 Si 0.97 40.10 29.54 68.60 2.03 42.13 16 9 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 10 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 12 N -0.69 -24.67 5.07 -446.08 -2.26 -26.93 16 13 C 0.50 17.33 5.79 87.66 0.51 17.84 16 14 O -0.58 -25.73 14.65 -3.06 -0.04 -25.78 16 15 C 0.10 2.53 3.38 44.33 0.15 2.68 16 16 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 17 C 0.06 1.21 6.18 71.99 0.44 1.66 16 18 O -0.36 -6.98 10.85 -148.98 -1.62 -8.60 16 19 C 0.05 1.01 6.98 71.13 0.50 1.51 16 20 C 0.48 13.60 7.56 87.69 0.66 14.26 16 21 O -0.57 -19.06 15.60 -3.06 -0.05 -19.11 16 22 N -0.58 -17.01 2.55 -809.05 -2.06 -19.07 16 23 C 0.15 5.05 4.80 85.63 0.41 5.46 16 24 C -0.12 -3.47 5.43 -19.86 -0.11 -3.58 16 25 C -0.12 -3.23 9.73 22.27 0.22 -3.01 16 26 C -0.12 -2.81 10.05 22.27 0.22 -2.59 16 27 C -0.12 -2.32 10.05 22.27 0.22 -2.09 16 28 C -0.13 -2.81 10.05 22.27 0.22 -2.58 16 29 C -0.11 -3.01 9.36 22.27 0.21 -2.80 16 30 H 0.06 3.37 6.07 -2.38 -0.01 3.35 16 31 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 34 H 0.41 11.68 8.54 -92.71 -0.79 10.89 16 35 H 0.07 1.48 8.06 -2.39 -0.02 1.47 16 36 H 0.15 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.15 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.07 2.66 7.29 -2.39 -0.02 2.64 16 40 H 0.08 2.94 5.56 -2.39 -0.01 2.93 16 41 H 0.11 3.24 8.06 -2.91 -0.02 3.22 16 42 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 43 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 44 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 45 H 0.12 3.37 7.55 -2.91 -0.02 3.35 16 Total: -1.00 -68.90 373.88 1.57 -67.33 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: 0.22 Total: 31.20 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 5.11 Total: 9.17 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -4.08 Total: -96.34 kcal Atomic # 8 Polarization: -51.78 SS G_CDS: -1.71 Total: -53.49 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.13 kcal Total: -68.90 1.57 -67.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171720788.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.061 kcal (2) G-P(sol) polarization free energy of solvation -68.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds