Wall clock time and date at job start Tue Mar 31 2020 16:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 116.99901 * 2 1 4 4 O 1.20830 * 119.99895 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99963 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.47236 * 179.97438 * 5 3 2 7 7 C 1.36937 * 119.99865 * 97.52370 * 6 5 3 8 8 H 1.08003 * 120.00126 * 226.99730 * 7 6 5 9 9 C 1.38818 * 119.99768 * 46.72820 * 7 6 5 10 10 N 1.31621 * 119.99601 * 208.67089 * 9 7 6 11 11 Si 1.86793 * 120.00009 * 28.66846 * 9 7 6 12 12 H 1.48504 * 109.47238 * 55.11176 * 11 9 7 13 13 H 1.48502 * 109.47188 * 175.11103 * 11 9 7 14 14 H 1.48495 * 109.47579 * 295.11036 * 11 9 7 15 15 C 1.46497 * 120.00261 * 277.52789 * 6 5 3 16 16 C 1.50695 * 109.47342 * 279.04857 * 15 6 5 17 17 O 1.21296 * 119.99711 * 357.49802 * 16 15 6 18 18 N 1.34780 * 120.00391 * 177.49318 * 16 15 6 19 19 C 1.39829 * 124.97736 * 0.02649 * 18 16 15 20 20 C 1.39634 * 129.33817 * 0.02562 * 19 18 16 21 21 C 1.37836 * 120.28456 * 179.97438 * 20 19 18 22 22 C 1.38298 * 120.22592 * 0.02562 * 21 20 19 23 23 C 1.38229 * 119.82639 * 359.97438 * 22 21 20 24 24 C 1.38192 * 120.14785 * 359.97438 * 23 22 21 25 25 C 1.51207 * 130.96657 * 180.02562 * 24 23 22 26 26 C 1.46542 * 124.97805 * 179.72439 * 18 16 15 27 27 H 1.08993 * 110.30049 * 61.06830 * 26 18 16 28 28 C 1.53002 * 110.29483 * 298.92998 * 26 18 16 29 29 H 1.08996 * 109.47396 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47426 * 300.00111 * 1 2 3 31 31 H 1.09001 * 109.47487 * 59.99650 * 1 2 3 32 32 H 1.08999 * 109.47090 * 60.00160 * 5 3 2 33 33 H 1.09000 * 109.47293 * 300.00095 * 5 3 2 34 34 H 0.97000 * 119.99447 * 179.97438 * 10 9 7 35 35 H 1.09003 * 109.47135 * 39.04900 * 15 6 5 36 36 H 1.09001 * 109.47088 * 159.04715 * 15 6 5 37 37 H 1.08001 * 119.85557 * 359.97438 * 20 19 18 38 38 H 1.08003 * 119.88457 * 180.02562 * 21 20 19 39 39 H 1.08000 * 120.08499 * 180.02562 * 22 21 20 40 40 H 1.07996 * 119.92477 * 180.02562 * 23 22 21 41 41 H 1.08999 * 110.42048 * 298.77557 * 25 24 23 42 42 H 1.09001 * 110.41443 * 61.11029 * 25 24 23 43 43 H 1.09000 * 109.47549 * 60.00417 * 28 26 18 44 44 H 1.09008 * 109.46519 * 180.02562 * 28 26 18 45 45 H 1.08996 * 109.47437 * 299.99853 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 4.3242 3.2930 1.1753 8 1 3.9257 4.2687 1.4115 9 6 5.1793 2.6583 2.0658 10 7 5.0885 2.9061 3.3553 11 14 6.4585 1.4526 1.4341 12 1 7.2987 2.1163 0.4051 13 1 7.3165 1.0057 2.5608 14 1 5.7774 0.2773 0.8342 15 6 4.0305 3.4285 -1.2584 16 6 5.3124 3.1093 -1.9835 17 8 6.1276 2.3680 -1.4763 18 7 5.5530 3.6474 -3.1956 19 6 4.6891 4.5122 -3.8745 20 6 3.4403 5.0011 -3.4857 21 6 2.7405 5.8551 -4.3108 22 6 3.2701 6.2339 -5.5309 23 6 4.5058 5.7540 -5.9228 24 6 5.2114 4.8985 -5.0983 25 6 6.5596 4.2373 -5.2766 26 6 6.7612 3.4168 -3.9922 27 1 6.8590 2.3583 -4.2331 28 6 7.9974 3.9063 -3.2352 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 3.9564 0.7806 -0.8892 33 1 3.9557 0.7810 0.8908 34 1 5.6858 2.4623 3.9776 35 1 3.1811 3.1481 -1.8813 36 1 3.9890 4.4971 -1.0471 37 1 3.0209 4.7088 -2.5343 38 1 1.7753 6.2297 -4.0034 39 1 2.7200 6.9035 -6.1755 40 1 4.9211 6.0491 -6.8751 41 1 6.5509 3.5854 -6.1501 42 1 7.3423 4.9898 -5.3725 43 1 8.0842 3.3657 -2.2927 44 1 8.8872 3.7289 -3.8394 45 1 7.9018 4.9734 -3.0346 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177621727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:14 Heat of formation + Delta-G solvation = -41.842478 kcal Electronic energy + Delta-G solvation = -29710.128673 eV Core-core repulsion = 25694.597903 eV Total energy + Delta-G solvation = -4015.530771 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 3.20 seconds Orbital eigenvalues (eV) -41.11352 -39.67130 -38.46038 -36.64816 -35.91598 -34.90128 -33.09607 -31.77386 -30.85487 -29.53862 -29.05087 -27.42296 -26.43528 -26.16592 -23.48106 -22.17401 -21.82281 -21.08632 -20.27195 -19.39801 -17.43722 -16.99920 -16.70255 -16.47279 -16.07437 -15.92842 -15.64314 -15.31337 -14.88207 -14.60722 -14.26214 -14.01462 -13.80477 -13.46747 -13.10090 -13.04079 -12.97572 -12.78230 -12.59929 -12.41307 -12.26122 -12.23796 -11.87078 -11.65416 -11.50561 -11.27748 -11.05712 -10.86766 -10.78760 -10.46657 -10.33174 -10.24721 -10.06434 -10.01496 -9.71105 -9.20901 -8.79480 -8.48117 -7.63291 -7.00775 -6.18036 -3.70362 1.34270 1.38810 2.92762 3.01460 3.09198 3.32036 3.50818 3.57188 3.82742 3.84717 4.38864 4.49464 4.52845 4.77749 4.91848 4.95054 5.01185 5.11002 5.19640 5.34177 5.41152 5.42407 5.46736 5.47797 5.51362 5.59510 5.60065 5.70012 5.84184 5.86761 5.89014 5.96737 6.00400 6.02708 6.10494 6.25990 6.33412 6.37027 6.44919 6.54807 6.64651 6.99490 7.01279 7.69261 7.84382 8.21207 8.50230 8.54315 8.79244 9.51101 9.85888 10.93524 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010705 B = 0.005022 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.030925 B = 5574.310287 C = 7121.667394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.375 6.375 3 C 0.429 3.571 4 O -0.499 6.499 5 C 0.150 3.850 6 N -0.545 5.545 7 C -0.297 4.297 8 H 0.079 0.921 9 C 0.058 3.942 10 N -0.873 5.873 11 Si 0.881 3.119 12 H -0.247 1.247 13 H -0.311 1.311 14 H -0.278 1.278 15 C 0.127 3.873 16 C 0.488 3.512 17 O -0.490 6.490 18 N -0.558 5.558 19 C 0.164 3.836 20 C -0.164 4.164 21 C -0.083 4.083 22 C -0.155 4.155 23 C -0.076 4.076 24 C -0.147 4.147 25 C -0.081 4.081 26 C 0.131 3.869 27 H 0.084 0.916 28 C -0.162 4.162 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.268 0.732 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.142 0.858 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.024 1.443 -18.446 18.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.292 6.292 3 C 0.269 3.731 4 O -0.385 6.385 5 C 0.021 3.979 6 N -0.263 5.263 7 C -0.425 4.425 8 H 0.096 0.904 9 C -0.148 4.148 10 N -0.509 5.509 11 Si 0.709 3.291 12 H -0.172 1.172 13 H -0.239 1.239 14 H -0.204 1.204 15 C -0.002 4.002 16 C 0.277 3.723 17 O -0.362 6.362 18 N -0.284 5.284 19 C 0.066 3.934 20 C -0.185 4.185 21 C -0.102 4.102 22 C -0.174 4.174 23 C -0.094 4.094 24 C -0.150 4.150 25 C -0.118 4.118 26 C 0.029 3.971 27 H 0.102 0.898 28 C -0.220 4.220 29 H 0.108 0.892 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.126 0.874 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.159 0.841 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.096 0.904 44 H 0.084 0.916 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.674 1.198 -17.731 17.850 hybrid contribution 0.506 -0.565 -0.203 0.786 sum -1.168 0.633 -17.935 17.984 Atomic orbital electron populations 1.23075 0.78521 1.02474 1.01908 1.86615 1.22060 1.35637 1.84870 1.26427 0.94198 0.80800 0.71657 1.90554 1.66896 1.36379 1.44627 1.21278 0.84330 0.88618 1.03722 1.43449 1.72152 1.08022 1.02654 1.18588 1.25576 1.05400 0.92887 0.90374 1.25734 0.96640 0.97712 0.94720 1.69994 1.36267 1.43200 1.01406 0.87023 0.83442 0.81268 0.77344 1.17172 1.23917 1.20439 1.21624 0.91229 0.99243 0.88104 1.23328 0.91207 0.79512 0.78291 1.90714 1.47427 1.34558 1.63516 1.46731 1.18110 1.45035 1.18475 1.18426 0.91504 0.91601 0.91822 1.21254 0.93652 1.01058 1.02526 1.20891 0.99388 0.96184 0.93729 1.20942 0.96332 1.02640 0.97471 1.20326 0.94359 0.96124 0.98614 1.20006 0.97505 1.02168 0.95331 1.21184 0.94662 0.98625 0.97316 1.21561 0.85583 1.00064 0.89930 0.89769 1.22153 0.95939 1.01933 1.02010 0.89159 0.92393 0.92727 0.90430 0.87400 0.92235 0.90670 0.88186 0.84063 0.85521 0.85983 0.86187 0.89651 0.89394 0.90442 0.91551 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 101.05 1.07 1.56 16 2 O -0.37 -6.92 10.57 -39.25 -0.41 -7.33 16 3 C 0.43 9.13 8.00 36.00 0.29 9.41 16 4 O -0.50 -11.57 16.08 -18.75 -0.30 -11.87 16 5 C 0.15 3.33 4.70 -5.20 -0.02 3.31 16 6 N -0.55 -12.99 0.96 -175.99 -0.17 -13.16 16 7 C -0.30 -8.23 9.69 -15.06 -0.15 -8.38 16 8 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 9 C 0.06 1.64 5.02 -17.43 -0.09 1.55 16 10 N -0.87 -26.13 13.97 55.49 0.78 -25.36 16 11 Si 0.88 22.79 24.53 -169.99 -4.17 18.62 16 12 H -0.25 -6.59 5.85 56.52 0.33 -6.26 16 13 H -0.31 -8.14 7.11 56.52 0.40 -7.74 16 14 H -0.28 -6.89 5.95 56.52 0.34 -6.55 16 15 C 0.13 2.56 3.90 -5.20 -0.02 2.54 16 16 C 0.49 9.65 7.62 -10.99 -0.08 9.56 16 17 O -0.49 -11.21 11.46 5.54 0.06 -11.14 16 18 N -0.56 -9.13 2.89 -105.84 -0.31 -9.44 16 19 C 0.16 2.39 6.59 -83.57 -0.55 1.84 16 20 C -0.16 -2.28 8.88 -39.21 -0.35 -2.63 16 21 C -0.08 -0.96 10.02 -39.71 -0.40 -1.36 16 22 C -0.15 -1.58 10.06 -39.56 -0.40 -1.98 16 23 C -0.08 -0.79 10.04 -39.60 -0.40 -1.19 16 24 C -0.15 -1.81 6.23 -104.27 -0.65 -2.46 16 25 C -0.08 -0.85 6.59 -27.25 -0.18 -1.03 16 26 C 0.13 1.79 3.64 -67.52 -0.25 1.55 16 27 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 28 C -0.16 -2.22 9.07 37.16 0.34 -1.89 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 31 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 32 H 0.08 1.58 8.12 -51.93 -0.42 1.16 16 33 H 0.11 2.57 5.12 -51.93 -0.27 2.31 16 34 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.08 1.38 6.71 -51.93 -0.35 1.03 16 36 H 0.10 1.98 6.93 -51.93 -0.36 1.62 16 37 H 0.14 2.08 4.21 -52.49 -0.22 1.86 16 38 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.09 0.80 7.71 -51.93 -0.40 0.40 16 43 H 0.08 1.33 6.78 -51.93 -0.35 0.98 16 44 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 363.05 15.07 5.47 5.47 Total: -1.00 -33.81 363.05 -7.18 -40.99 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -6.29 Total: 2.81 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: -1.84 Total: 10.41 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.30 Total: -47.95 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.65 Total: -30.35 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.17 Total: 18.62 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.81 -7.18 -40.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177621727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.852 kcal (2) G-P(sol) polarization free energy of solvation -33.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.20 seconds