Wall clock time and date at job start Tue Mar 31 2020 16:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 116.99901 * 2 1 4 4 O 1.20830 * 119.99895 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99963 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.47236 * 179.97438 * 5 3 2 7 7 C 1.36937 * 119.99865 * 97.52370 * 6 5 3 8 8 H 1.08003 * 120.00126 * 226.99730 * 7 6 5 9 9 C 1.38818 * 119.99768 * 46.72820 * 7 6 5 10 10 N 1.31621 * 119.99601 * 208.67089 * 9 7 6 11 11 Si 1.86793 * 120.00009 * 28.66846 * 9 7 6 12 12 H 1.48504 * 109.47238 * 55.11176 * 11 9 7 13 13 H 1.48502 * 109.47188 * 175.11103 * 11 9 7 14 14 H 1.48495 * 109.47579 * 295.11036 * 11 9 7 15 15 C 1.46497 * 120.00261 * 277.52789 * 6 5 3 16 16 C 1.50695 * 109.47342 * 279.04857 * 15 6 5 17 17 O 1.21296 * 119.99711 * 357.49802 * 16 15 6 18 18 N 1.34780 * 120.00391 * 177.49318 * 16 15 6 19 19 C 1.39829 * 124.97736 * 0.02649 * 18 16 15 20 20 C 1.39634 * 129.33817 * 0.02562 * 19 18 16 21 21 C 1.37836 * 120.28456 * 179.97438 * 20 19 18 22 22 C 1.38298 * 120.22592 * 0.02562 * 21 20 19 23 23 C 1.38229 * 119.82639 * 359.97438 * 22 21 20 24 24 C 1.38192 * 120.14785 * 359.97438 * 23 22 21 25 25 C 1.51207 * 130.96657 * 180.02562 * 24 23 22 26 26 C 1.46542 * 124.97805 * 179.72439 * 18 16 15 27 27 H 1.08993 * 110.30049 * 61.06830 * 26 18 16 28 28 C 1.53002 * 110.29483 * 298.92998 * 26 18 16 29 29 H 1.08996 * 109.47396 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47426 * 300.00111 * 1 2 3 31 31 H 1.09001 * 109.47487 * 59.99650 * 1 2 3 32 32 H 1.08999 * 109.47090 * 60.00160 * 5 3 2 33 33 H 1.09000 * 109.47293 * 300.00095 * 5 3 2 34 34 H 0.97000 * 119.99447 * 179.97438 * 10 9 7 35 35 H 1.09003 * 109.47135 * 39.04900 * 15 6 5 36 36 H 1.09001 * 109.47088 * 159.04715 * 15 6 5 37 37 H 1.08001 * 119.85557 * 359.97438 * 20 19 18 38 38 H 1.08003 * 119.88457 * 180.02562 * 21 20 19 39 39 H 1.08000 * 120.08499 * 180.02562 * 22 21 20 40 40 H 1.07996 * 119.92477 * 180.02562 * 23 22 21 41 41 H 1.08999 * 110.42048 * 298.77557 * 25 24 23 42 42 H 1.09001 * 110.41443 * 61.11029 * 25 24 23 43 43 H 1.09000 * 109.47549 * 60.00417 * 28 26 18 44 44 H 1.09008 * 109.46519 * 180.02562 * 28 26 18 45 45 H 1.08996 * 109.47437 * 299.99853 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 4.3242 3.2930 1.1753 8 1 3.9257 4.2687 1.4115 9 6 5.1793 2.6583 2.0658 10 7 5.0885 2.9061 3.3553 11 14 6.4585 1.4526 1.4341 12 1 7.2987 2.1163 0.4051 13 1 7.3165 1.0057 2.5608 14 1 5.7774 0.2773 0.8342 15 6 4.0305 3.4285 -1.2584 16 6 5.3124 3.1093 -1.9835 17 8 6.1276 2.3680 -1.4763 18 7 5.5530 3.6474 -3.1956 19 6 4.6891 4.5122 -3.8745 20 6 3.4403 5.0011 -3.4857 21 6 2.7405 5.8551 -4.3108 22 6 3.2701 6.2339 -5.5309 23 6 4.5058 5.7540 -5.9228 24 6 5.2114 4.8985 -5.0983 25 6 6.5596 4.2373 -5.2766 26 6 6.7612 3.4168 -3.9922 27 1 6.8590 2.3583 -4.2331 28 6 7.9974 3.9063 -3.2352 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 3.9564 0.7806 -0.8892 33 1 3.9557 0.7810 0.8908 34 1 5.6858 2.4623 3.9776 35 1 3.1811 3.1481 -1.8813 36 1 3.9890 4.4971 -1.0471 37 1 3.0209 4.7088 -2.5343 38 1 1.7753 6.2297 -4.0034 39 1 2.7200 6.9035 -6.1755 40 1 4.9211 6.0491 -6.8751 41 1 6.5509 3.5854 -6.1501 42 1 7.3423 4.9898 -5.3725 43 1 8.0842 3.3657 -2.2927 44 1 8.8872 3.7289 -3.8394 45 1 7.9018 4.9734 -3.0346 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177621727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:11 Heat of formation + Delta-G solvation = -61.937849 kcal Electronic energy + Delta-G solvation = -29711.000074 eV Core-core repulsion = 25694.597903 eV Total energy + Delta-G solvation = -4016.402171 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 4.42 seconds Orbital eigenvalues (eV) -42.26585 -41.30660 -39.80715 -38.02480 -37.32855 -36.65951 -34.37481 -33.77978 -31.84441 -30.65709 -30.54207 -29.01816 -27.78275 -27.38724 -25.02010 -23.50742 -22.93769 -22.30917 -21.82184 -20.64863 -19.28136 -18.73030 -18.12934 -17.76147 -17.57748 -17.21052 -17.07561 -16.76934 -16.36327 -16.02354 -15.51308 -15.38788 -15.26898 -14.76540 -14.63130 -14.56087 -14.35186 -14.14385 -13.99360 -13.70398 -13.45882 -13.31481 -13.10015 -12.96472 -12.85535 -12.63303 -12.59909 -12.39566 -12.28557 -12.10042 -11.94933 -11.71636 -11.70174 -11.49733 -11.19003 -10.92268 -10.60910 -9.69056 -8.94880 -8.72092 -8.39754 -5.89255 0.34256 0.47159 1.28975 1.35403 1.40647 1.65787 1.66577 1.75569 1.94968 2.39440 2.87824 2.90017 3.09712 3.36989 3.55514 3.78825 3.97485 4.05945 4.10068 4.20980 4.22557 4.27678 4.31020 4.34526 4.35708 4.40997 4.42956 4.51495 4.58825 4.59527 4.69187 4.70738 4.77837 4.95952 5.01314 5.13414 5.20563 5.31126 5.41788 5.56198 5.58641 5.68241 5.74451 6.06527 6.08845 6.43160 6.62465 6.93228 7.07147 7.36258 7.78089 8.76576 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010705 B = 0.005022 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.030925 B = 5574.310287 C = 7121.667394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.374 6.374 3 C 0.437 3.563 4 O -0.524 6.524 5 C 0.148 3.852 6 N -0.559 5.559 7 C -0.286 4.286 8 H 0.041 0.959 9 C 0.018 3.982 10 N -0.916 5.916 11 Si 0.938 3.062 12 H -0.261 1.261 13 H -0.315 1.315 14 H -0.262 1.262 15 C 0.135 3.865 16 C 0.489 3.511 17 O -0.530 6.530 18 N -0.558 5.558 19 C 0.123 3.877 20 C -0.182 4.182 21 C -0.092 4.092 22 C -0.142 4.142 23 C -0.073 4.073 24 C -0.143 4.143 25 C -0.069 4.069 26 C 0.122 3.878 27 H 0.085 0.915 28 C -0.156 4.156 29 H 0.133 0.867 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.269 0.731 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.122 0.878 38 H 0.143 0.857 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.113 0.887 42 H 0.109 0.891 43 H 0.035 0.965 44 H 0.100 0.900 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.390 1.404 -22.669 22.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.290 6.290 3 C 0.278 3.722 4 O -0.412 6.412 5 C 0.019 3.981 6 N -0.278 5.278 7 C -0.415 4.415 8 H 0.059 0.941 9 C -0.184 4.184 10 N -0.555 5.555 11 Si 0.766 3.234 12 H -0.186 1.186 13 H -0.244 1.244 14 H -0.187 1.187 15 C 0.006 3.994 16 C 0.278 3.722 17 O -0.405 6.405 18 N -0.283 5.283 19 C 0.027 3.973 20 C -0.202 4.202 21 C -0.110 4.110 22 C -0.160 4.160 23 C -0.091 4.091 24 C -0.146 4.146 25 C -0.106 4.106 26 C 0.020 3.980 27 H 0.103 0.897 28 C -0.214 4.214 29 H 0.152 0.848 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.139 0.861 38 H 0.161 0.839 39 H 0.173 0.827 40 H 0.174 0.826 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.054 0.946 44 H 0.118 0.882 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.074 1.166 -22.035 22.163 hybrid contribution 0.414 -0.447 0.921 1.104 sum -1.660 0.719 -21.114 21.191 Atomic orbital electron populations 1.23483 0.75601 1.05417 1.02086 1.86554 1.24725 1.33575 1.84147 1.25899 0.93836 0.81243 0.71217 1.90545 1.67353 1.37361 1.45918 1.21147 0.85418 0.87672 1.03835 1.43396 1.73127 1.08540 1.02770 1.18368 1.24596 1.04189 0.94362 0.94104 1.26179 0.97957 0.99614 0.94636 1.70068 1.37637 1.45432 1.02394 0.86090 0.81150 0.80108 0.76003 1.18586 1.24381 1.18730 1.21520 0.92510 0.98338 0.86983 1.22743 0.90431 0.79535 0.79496 1.90676 1.48269 1.36626 1.64964 1.46486 1.19489 1.44713 1.17564 1.18697 0.92143 0.93152 0.93279 1.21278 0.94152 1.02330 1.02471 1.21159 1.00005 0.95670 0.94184 1.21389 0.96229 1.01650 0.96762 1.20758 0.94056 0.94806 0.99501 1.20324 0.98085 1.01896 0.94294 1.21211 0.94286 0.98954 0.96159 1.21834 0.84220 1.00932 0.90981 0.89734 1.22095 0.97708 1.00865 1.00706 0.84848 0.93007 0.91850 0.88459 0.89043 0.92147 0.89107 0.88855 0.86053 0.83946 0.82681 0.82630 0.86880 0.87248 0.94585 0.88181 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.56 113.37 1.20 1.92 16 2 O -0.37 -13.34 10.57 -51.41 -0.54 -13.88 16 3 C 0.44 18.63 8.00 71.24 0.57 19.20 16 4 O -0.52 -24.61 16.08 21.95 0.35 -24.26 16 5 C 0.15 6.68 4.70 85.63 0.40 7.08 16 6 N -0.56 -27.65 0.96 -710.70 -0.69 -28.33 16 7 C -0.29 -16.70 9.69 84.04 0.81 -15.89 16 8 H 0.04 2.65 8.06 -2.91 -0.02 2.62 16 9 C 0.02 1.06 5.02 84.86 0.43 1.49 16 10 N -0.92 -57.26 13.97 21.65 0.30 -56.96 16 11 Si 0.94 49.19 24.53 68.60 1.68 50.87 16 12 H -0.26 -14.22 5.85 99.48 0.58 -13.63 16 13 H -0.31 -16.49 7.11 99.48 0.71 -15.79 16 14 H -0.26 -12.84 5.95 99.48 0.59 -12.25 16 15 C 0.14 5.65 3.90 85.63 0.33 5.98 16 16 C 0.49 19.90 7.62 87.65 0.67 20.57 16 17 O -0.53 -24.92 11.46 -3.08 -0.04 -24.95 16 18 N -0.56 -18.21 2.89 -607.17 -1.75 -19.96 16 19 C 0.12 3.47 6.59 38.28 0.25 3.72 16 20 C -0.18 -5.00 8.88 22.51 0.20 -4.80 16 21 C -0.09 -1.93 10.02 22.19 0.22 -1.71 16 22 C -0.14 -2.32 10.06 22.28 0.22 -2.09 16 23 C -0.07 -1.19 10.04 22.26 0.22 -0.97 16 24 C -0.14 -3.06 6.23 -19.64 -0.12 -3.18 16 25 C -0.07 -1.21 6.59 30.26 0.20 -1.01 16 26 C 0.12 3.16 3.64 45.23 0.16 3.33 16 27 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 28 C -0.16 -4.16 9.07 71.98 0.65 -3.51 16 29 H 0.13 2.37 8.14 -2.39 -0.02 2.36 16 30 H 0.05 1.44 8.13 -2.38 -0.02 1.42 16 31 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 32 H 0.10 3.97 8.12 -2.39 -0.02 3.95 16 33 H 0.09 4.44 5.12 -2.39 -0.01 4.42 16 34 H 0.27 15.92 8.31 -92.71 -0.77 15.14 16 35 H 0.09 3.46 6.71 -2.39 -0.02 3.44 16 36 H 0.09 3.95 6.93 -2.39 -0.02 3.94 16 37 H 0.12 3.73 4.21 -2.91 -0.01 3.72 16 38 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 39 H 0.16 1.55 8.06 -2.91 -0.02 1.52 16 40 H 0.16 1.48 8.06 -2.91 -0.02 1.45 16 41 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.11 1.50 7.71 -2.39 -0.02 1.48 16 43 H 0.03 1.26 6.78 -2.39 -0.02 1.25 16 44 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 45 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -77.94 363.05 6.52 -71.42 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.77 Total: 15.92 kcal Atomic # 6 Polarization: 23.70 SS G_CDS: 6.43 Total: 30.12 kcal Atomic # 7 Polarization: -103.12 SS G_CDS: -2.13 Total: -105.25 kcal Atomic # 8 Polarization: -62.86 SS G_CDS: -0.23 Total: -63.09 kcal Atomic # 14 Polarization: 49.19 SS G_CDS: 1.68 Total: 50.87 kcal Total: -77.94 6.52 -71.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177621727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.484 kcal (2) G-P(sol) polarization free energy of solvation -77.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.42 seconds