Wall clock time and date at job start Tue Mar 31 2020 16:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34228 * 116.99891 * 2 1 4 4 O 1.20829 * 120.00066 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00044 * 180.02562 * 3 2 1 6 6 N 1.46506 * 109.46900 * 185.98707 * 5 3 2 7 7 C 1.36937 * 120.00026 * 83.16413 * 6 5 3 8 8 H 1.08001 * 119.99853 * 166.93345 * 7 6 5 9 9 C 1.38813 * 119.99837 * 346.94425 * 7 6 5 10 10 N 1.31615 * 120.00183 * 359.45218 * 9 7 6 11 11 Si 1.86807 * 119.99763 * 179.46278 * 9 7 6 12 12 H 1.48500 * 109.47307 * 59.99202 * 11 9 7 13 13 H 1.48500 * 109.46823 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46611 * 299.99409 * 11 9 7 15 15 C 1.46498 * 120.00082 * 263.16093 * 6 5 3 16 16 C 1.50698 * 109.47078 * 274.50547 * 15 6 5 17 17 O 1.21287 * 120.00291 * 0.07668 * 16 15 6 18 18 N 1.34787 * 119.99601 * 180.08150 * 16 15 6 19 19 C 1.39826 * 124.98072 * 0.02562 * 18 16 15 20 20 C 1.39635 * 129.33601 * 0.02562 * 19 18 16 21 21 C 1.37835 * 120.28267 * 179.97438 * 20 19 18 22 22 C 1.38300 * 120.22842 * 359.79299 * 21 20 19 23 23 C 1.38231 * 119.82238 * 0.45993 * 22 21 20 24 24 C 1.38189 * 120.15031 * 359.51659 * 23 22 21 25 25 C 1.51215 * 130.97094 * 180.28172 * 24 23 22 26 26 C 1.46536 * 124.97485 * 180.02562 * 18 16 15 27 27 H 1.09005 * 110.30248 * 298.92952 * 26 18 16 28 28 C 1.52998 * 110.29720 * 60.97446 * 26 18 16 29 29 H 1.09009 * 109.47311 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47489 * 300.00133 * 1 2 3 31 31 H 1.09004 * 109.47758 * 60.00440 * 1 2 3 32 32 H 1.08994 * 109.47441 * 65.98689 * 5 3 2 33 33 H 1.08999 * 109.47112 * 305.98399 * 5 3 2 34 34 H 0.96998 * 119.99918 * 180.02562 * 10 9 7 35 35 H 1.08993 * 109.47125 * 154.50078 * 15 6 5 36 36 H 1.09007 * 109.46885 * 34.50157 * 15 6 5 37 37 H 1.08002 * 119.85497 * 359.97438 * 20 19 18 38 38 H 1.08007 * 119.88435 * 179.97438 * 21 20 19 39 39 H 1.07994 * 120.09229 * 180.22878 * 22 21 20 40 40 H 1.07996 * 119.92457 * 179.79453 * 23 22 21 41 41 H 1.08999 * 110.40934 * 298.74665 * 25 24 23 42 42 H 1.08996 * 110.41433 * 61.19965 * 25 24 23 43 43 H 1.08995 * 109.47100 * 59.99916 * 28 26 18 44 44 H 1.09003 * 109.46996 * 179.97438 * 28 26 18 45 45 H 1.09000 * 109.47280 * 299.99078 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 7 3.9820 2.6723 0.1436 7 6 4.0478 3.2423 1.3870 8 1 4.5485 4.1898 1.5208 9 6 3.4712 2.6020 2.4754 10 7 2.8519 1.4525 2.3104 11 14 3.5741 3.3722 4.1741 12 1 2.9197 4.7051 4.1538 13 1 2.8848 2.4977 5.1566 14 1 4.9992 3.5263 4.5622 15 6 4.3273 3.4599 -1.0424 16 6 5.7738 3.2280 -1.3957 17 8 6.4494 2.4775 -0.7238 18 7 6.3168 3.8547 -2.4583 19 6 5.6366 4.7389 -3.3012 20 6 4.3074 5.1640 -3.2509 21 6 3.8258 6.0522 -4.1884 22 6 4.6570 6.5326 -5.1839 23 6 5.9725 6.1124 -5.2434 24 6 6.4599 5.2224 -4.3053 25 6 7.8338 4.6138 -4.1359 26 6 7.7066 3.7092 -2.8994 27 1 8.3886 4.0407 -2.1163 28 6 7.9955 2.2538 -3.2724 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3635 0.5138 -0.8900 32 1 3.9506 0.8765 -0.9395 33 1 3.9610 0.6908 0.8307 34 1 2.4487 1.0053 3.0709 35 1 4.1692 4.5181 -0.8345 36 1 3.6961 3.1553 -1.8773 37 1 3.6541 4.7952 -2.4740 38 1 2.7965 6.3764 -4.1437 39 1 4.2783 7.2313 -5.9152 40 1 6.6221 6.4839 -6.0220 41 1 8.0988 4.0235 -5.0131 42 1 8.5760 5.3930 -3.9625 43 1 7.3316 1.9473 -4.0807 44 1 9.0314 2.1610 -3.5986 45 1 7.8292 1.6163 -2.4041 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177621742.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:29 Heat of formation + Delta-G solvation = -39.113708 kcal Electronic energy + Delta-G solvation = -29593.150689 eV Core-core repulsion = 25577.738247 eV Total energy + Delta-G solvation = -4015.412442 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -41.09333 -38.90797 -38.35845 -36.54294 -35.57608 -34.38597 -33.08854 -31.34611 -30.85077 -29.51966 -28.48972 -26.99826 -26.43097 -25.95460 -23.44235 -22.15414 -21.80944 -20.96948 -19.76862 -19.37659 -17.13934 -16.95044 -16.41515 -16.11491 -15.87524 -15.61826 -15.24070 -15.01327 -14.74775 -14.33533 -14.30187 -13.93588 -13.61282 -13.40365 -13.19489 -12.92803 -12.81311 -12.42471 -12.34507 -12.29301 -12.12365 -11.77553 -11.57084 -11.35261 -11.08504 -11.06862 -10.96667 -10.88755 -10.73493 -10.42215 -10.20134 -10.12176 -10.02542 -9.62155 -9.52856 -9.04606 -8.78221 -8.58100 -7.62462 -7.20290 -5.91366 -3.34189 1.35531 1.40092 2.98294 3.11718 3.36838 3.40092 3.41747 3.85228 3.94341 4.12980 4.40229 4.46189 4.50474 4.92950 4.96128 5.02133 5.11714 5.22370 5.31339 5.37077 5.44426 5.47415 5.55584 5.59792 5.69311 5.85787 5.89313 5.90315 5.92334 5.98328 6.02617 6.05916 6.15699 6.24945 6.30495 6.36096 6.45967 6.55666 6.65646 6.77245 7.00719 7.27854 7.56342 7.74482 7.86929 8.11005 8.55283 8.96815 9.48099 9.60691 9.98141 11.14930 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012333 B = 0.003997 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.825022 B = 7004.260759 C = 7543.634676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.376 6.376 3 C 0.480 3.520 4 O -0.532 6.532 5 C 0.197 3.803 6 N -0.550 5.550 7 C -0.234 4.234 8 H 0.080 0.920 9 C 0.001 3.999 10 N -0.919 5.919 11 Si 0.927 3.073 12 H -0.283 1.283 13 H -0.288 1.288 14 H -0.283 1.283 15 C 0.132 3.868 16 C 0.489 3.511 17 O -0.493 6.493 18 N -0.559 5.559 19 C 0.164 3.836 20 C -0.164 4.164 21 C -0.083 4.083 22 C -0.155 4.155 23 C -0.076 4.076 24 C -0.148 4.148 25 C -0.081 4.081 26 C 0.130 3.870 27 H 0.085 0.915 28 C -0.161 4.161 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.043 0.957 32 H 0.041 0.959 33 H 0.128 0.872 34 H 0.261 0.739 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.142 0.858 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.057 0.943 44 H 0.066 0.934 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.157 4.760 -15.351 16.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.293 6.293 3 C 0.322 3.678 4 O -0.420 6.420 5 C 0.069 3.931 6 N -0.267 5.267 7 C -0.362 4.362 8 H 0.097 0.903 9 C -0.194 4.194 10 N -0.568 5.568 11 Si 0.757 3.243 12 H -0.209 1.209 13 H -0.214 1.214 14 H -0.209 1.209 15 C 0.000 4.000 16 C 0.277 3.723 17 O -0.364 6.364 18 N -0.284 5.284 19 C 0.067 3.933 20 C -0.185 4.185 21 C -0.102 4.102 22 C -0.174 4.174 23 C -0.094 4.094 24 C -0.151 4.151 25 C -0.118 4.118 26 C 0.027 3.973 27 H 0.103 0.897 28 C -0.219 4.219 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.146 0.854 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.159 0.841 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.240 4.391 -14.574 16.097 hybrid contribution -0.322 0.500 1.002 1.165 sum 4.917 4.891 -13.572 15.241 Atomic orbital electron populations 1.22814 0.80138 1.01120 1.00986 1.86513 1.20555 1.36502 1.85759 1.24949 0.93092 0.80051 0.69718 1.90434 1.66864 1.36527 1.48127 1.20414 0.85469 0.86427 1.00807 1.43515 1.73249 1.08227 1.01688 1.19299 1.28926 1.04382 0.83633 0.90266 1.24808 0.98341 0.97174 0.99095 1.69401 1.40661 1.16689 1.30053 0.85959 0.77594 0.78251 0.82511 1.20948 1.21414 1.20892 1.21125 0.88969 0.98153 0.91704 1.23436 0.92623 0.78859 0.77362 1.90662 1.62924 1.34373 1.48417 1.46714 1.11004 1.43005 1.27696 1.18420 0.92902 0.91235 0.90746 1.21260 0.93594 1.01283 1.02366 1.20897 0.99725 0.95754 0.93805 1.20943 0.93821 1.02498 1.00153 1.20325 0.95541 0.96139 0.97420 1.20010 0.95787 1.01666 0.97638 1.21183 0.94617 0.98238 0.97739 1.21567 0.83251 0.96526 0.95909 0.89716 1.22142 1.01462 0.95481 1.02831 0.90283 0.93102 0.93818 0.94109 0.85420 0.92749 0.88997 0.90490 0.84055 0.85510 0.85991 0.86190 0.89398 0.89625 0.92407 0.91479 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 10.55 101.05 1.07 1.89 16 2 O -0.38 -8.56 10.56 -39.25 -0.41 -8.98 16 3 C 0.48 12.08 5.47 36.01 0.20 12.28 16 4 O -0.53 -14.64 16.02 -18.75 -0.30 -14.94 16 5 C 0.20 4.86 5.62 -5.19 -0.03 4.83 16 6 N -0.55 -13.70 1.55 -175.98 -0.27 -13.98 16 7 C -0.23 -6.37 9.67 -15.06 -0.15 -6.51 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 C 0.00 0.02 5.36 -17.43 -0.09 -0.07 16 10 N -0.92 -25.87 7.91 55.49 0.44 -25.44 16 11 Si 0.93 22.27 29.55 -169.99 -5.02 17.25 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 C 0.13 2.71 3.95 -5.20 -0.02 2.69 16 16 C 0.49 9.67 7.66 -10.98 -0.08 9.59 16 17 O -0.49 -11.33 15.33 5.55 0.09 -11.24 16 18 N -0.56 -9.03 2.89 -105.85 -0.31 -9.34 16 19 C 0.16 2.39 6.59 -83.57 -0.55 1.84 16 20 C -0.16 -2.29 8.88 -39.21 -0.35 -2.64 16 21 C -0.08 -0.96 10.02 -39.71 -0.40 -1.36 16 22 C -0.15 -1.59 10.06 -39.56 -0.40 -1.99 16 23 C -0.08 -0.79 10.04 -39.60 -0.40 -1.18 16 24 C -0.15 -1.80 6.23 -104.27 -0.65 -2.45 16 25 C -0.08 -0.83 6.58 -27.25 -0.18 -1.01 16 26 C 0.13 1.73 3.65 -67.53 -0.25 1.49 16 27 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 28 C -0.16 -2.02 9.07 37.16 0.34 -1.68 16 29 H 0.08 1.15 8.14 -51.92 -0.42 0.73 16 30 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 31 H 0.04 0.76 8.13 -51.93 -0.42 0.34 16 32 H 0.04 0.91 8.02 -51.93 -0.42 0.49 16 33 H 0.13 3.45 6.31 -51.93 -0.33 3.13 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.09 1.81 6.76 -51.93 -0.35 1.46 16 36 H 0.08 1.47 6.88 -51.93 -0.36 1.11 16 37 H 0.14 2.10 4.21 -52.49 -0.22 1.88 16 38 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.09 0.76 7.71 -51.93 -0.40 0.36 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.08 1.19 6.76 -51.93 -0.35 0.83 16 LS Contribution 368.47 15.07 5.55 5.55 Total: -1.00 -33.34 368.47 -8.38 -41.72 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -6.20 Total: 3.69 kcal Atomic # 6 Polarization: 17.63 SS G_CDS: -1.94 Total: 15.69 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -0.14 Total: -48.75 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -0.63 Total: -35.16 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.34 -8.38 -41.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177621742.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.609 kcal (2) G-P(sol) polarization free energy of solvation -33.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds