Wall clock time and date at job start Tue Mar 31 2020 16:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34228 * 116.99891 * 2 1 4 4 O 1.20829 * 120.00066 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00044 * 180.02562 * 3 2 1 6 6 N 1.46506 * 109.46900 * 185.98707 * 5 3 2 7 7 C 1.36937 * 120.00026 * 83.16413 * 6 5 3 8 8 H 1.08001 * 119.99853 * 166.93345 * 7 6 5 9 9 C 1.38813 * 119.99837 * 346.94425 * 7 6 5 10 10 N 1.31615 * 120.00183 * 359.45218 * 9 7 6 11 11 Si 1.86807 * 119.99763 * 179.46278 * 9 7 6 12 12 H 1.48500 * 109.47307 * 59.99202 * 11 9 7 13 13 H 1.48500 * 109.46823 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46611 * 299.99409 * 11 9 7 15 15 C 1.46498 * 120.00082 * 263.16093 * 6 5 3 16 16 C 1.50698 * 109.47078 * 274.50547 * 15 6 5 17 17 O 1.21287 * 120.00291 * 0.07668 * 16 15 6 18 18 N 1.34787 * 119.99601 * 180.08150 * 16 15 6 19 19 C 1.39826 * 124.98072 * 0.02562 * 18 16 15 20 20 C 1.39635 * 129.33601 * 0.02562 * 19 18 16 21 21 C 1.37835 * 120.28267 * 179.97438 * 20 19 18 22 22 C 1.38300 * 120.22842 * 359.79299 * 21 20 19 23 23 C 1.38231 * 119.82238 * 0.45993 * 22 21 20 24 24 C 1.38189 * 120.15031 * 359.51659 * 23 22 21 25 25 C 1.51215 * 130.97094 * 180.28172 * 24 23 22 26 26 C 1.46536 * 124.97485 * 180.02562 * 18 16 15 27 27 H 1.09005 * 110.30248 * 298.92952 * 26 18 16 28 28 C 1.52998 * 110.29720 * 60.97446 * 26 18 16 29 29 H 1.09009 * 109.47311 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47489 * 300.00133 * 1 2 3 31 31 H 1.09004 * 109.47758 * 60.00440 * 1 2 3 32 32 H 1.08994 * 109.47441 * 65.98689 * 5 3 2 33 33 H 1.08999 * 109.47112 * 305.98399 * 5 3 2 34 34 H 0.96998 * 119.99918 * 180.02562 * 10 9 7 35 35 H 1.08993 * 109.47125 * 154.50078 * 15 6 5 36 36 H 1.09007 * 109.46885 * 34.50157 * 15 6 5 37 37 H 1.08002 * 119.85497 * 359.97438 * 20 19 18 38 38 H 1.08007 * 119.88435 * 179.97438 * 21 20 19 39 39 H 1.07994 * 120.09229 * 180.22878 * 22 21 20 40 40 H 1.07996 * 119.92457 * 179.79453 * 23 22 21 41 41 H 1.08999 * 110.40934 * 298.74665 * 25 24 23 42 42 H 1.08996 * 110.41433 * 61.19965 * 25 24 23 43 43 H 1.08995 * 109.47100 * 59.99916 * 28 26 18 44 44 H 1.09003 * 109.46996 * 179.97438 * 28 26 18 45 45 H 1.09000 * 109.47280 * 299.99078 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 7 3.9820 2.6723 0.1436 7 6 4.0478 3.2423 1.3870 8 1 4.5485 4.1898 1.5208 9 6 3.4712 2.6020 2.4754 10 7 2.8519 1.4525 2.3104 11 14 3.5741 3.3722 4.1741 12 1 2.9197 4.7051 4.1538 13 1 2.8848 2.4977 5.1566 14 1 4.9992 3.5263 4.5622 15 6 4.3273 3.4599 -1.0424 16 6 5.7738 3.2280 -1.3957 17 8 6.4494 2.4775 -0.7238 18 7 6.3168 3.8547 -2.4583 19 6 5.6366 4.7389 -3.3012 20 6 4.3074 5.1640 -3.2509 21 6 3.8258 6.0522 -4.1884 22 6 4.6570 6.5326 -5.1839 23 6 5.9725 6.1124 -5.2434 24 6 6.4599 5.2224 -4.3053 25 6 7.8338 4.6138 -4.1359 26 6 7.7066 3.7092 -2.8994 27 1 8.3886 4.0407 -2.1163 28 6 7.9955 2.2538 -3.2724 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3635 0.5138 -0.8900 32 1 3.9506 0.8765 -0.9395 33 1 3.9610 0.6908 0.8307 34 1 2.4487 1.0053 3.0709 35 1 4.1692 4.5181 -0.8345 36 1 3.6961 3.1553 -1.8773 37 1 3.6541 4.7952 -2.4740 38 1 2.7965 6.3764 -4.1437 39 1 4.2783 7.2313 -5.9152 40 1 6.6221 6.4839 -6.0220 41 1 8.0988 4.0235 -5.0131 42 1 8.5760 5.3930 -3.9625 43 1 7.3316 1.9473 -4.0807 44 1 9.0314 2.1610 -3.5986 45 1 7.8292 1.6163 -2.4041 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177621742.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:25 Heat of formation + Delta-G solvation = -57.413107 kcal Electronic energy + Delta-G solvation = -29593.944211 eV Core-core repulsion = 25577.738247 eV Total energy + Delta-G solvation = -4016.205964 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 4.83 seconds Orbital eigenvalues (eV) -42.24093 -40.79028 -39.74595 -37.90463 -37.17435 -36.32167 -34.34599 -33.21547 -31.82366 -30.53897 -30.28432 -28.71036 -27.72176 -27.35843 -24.99242 -23.48860 -22.91153 -22.12187 -21.60724 -20.64434 -19.07107 -18.39544 -17.94762 -17.62271 -17.41033 -16.93292 -16.82309 -16.62548 -16.36200 -15.76119 -15.56015 -15.32783 -15.01026 -14.97976 -14.49490 -14.08726 -14.04223 -13.88394 -13.68489 -13.51529 -13.31210 -13.13606 -12.95542 -12.83802 -12.72869 -12.68471 -12.46894 -12.34854 -12.18333 -12.06938 -12.01721 -11.67389 -11.40117 -11.33367 -11.19120 -10.89099 -10.61507 -9.68208 -9.16302 -8.71469 -7.98543 -5.42312 0.35208 0.48040 1.41557 1.44511 1.50556 1.67833 1.73210 2.03085 2.31992 2.52325 2.90895 3.21642 3.36648 3.42111 3.56959 3.81684 4.00262 4.12056 4.24913 4.27186 4.32198 4.35716 4.39042 4.44006 4.45694 4.50746 4.56313 4.60899 4.66742 4.73241 4.80755 4.93652 4.98090 5.02917 5.14603 5.22677 5.24834 5.32649 5.44221 5.57214 5.60473 5.69634 5.96272 6.08545 6.09740 6.46625 6.90396 7.07656 7.49358 7.64501 7.96444 9.05143 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012333 B = 0.003997 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.825022 B = 7004.260759 C = 7543.634676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.383 6.383 3 C 0.485 3.515 4 O -0.561 6.561 5 C 0.201 3.799 6 N -0.566 5.566 7 C -0.244 4.244 8 H 0.077 0.923 9 C -0.051 4.051 10 N -0.936 5.936 11 Si 0.984 3.016 12 H -0.281 1.281 13 H -0.290 1.290 14 H -0.278 1.278 15 C 0.138 3.862 16 C 0.493 3.507 17 O -0.538 6.538 18 N -0.557 5.557 19 C 0.123 3.877 20 C -0.182 4.182 21 C -0.092 4.092 22 C -0.142 4.142 23 C -0.073 4.073 24 C -0.143 4.143 25 C -0.069 4.069 26 C 0.120 3.880 27 H 0.077 0.923 28 C -0.154 4.154 29 H 0.124 0.876 30 H 0.033 0.967 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.253 0.747 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.121 0.879 38 H 0.142 0.858 39 H 0.156 0.844 40 H 0.157 0.843 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.059 0.941 44 H 0.099 0.901 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.914 6.364 -18.229 20.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.299 6.299 3 C 0.328 3.672 4 O -0.451 6.451 5 C 0.072 3.928 6 N -0.284 5.284 7 C -0.373 4.373 8 H 0.095 0.905 9 C -0.243 4.243 10 N -0.586 5.586 11 Si 0.812 3.188 12 H -0.207 1.207 13 H -0.216 1.216 14 H -0.204 1.204 15 C 0.007 3.993 16 C 0.281 3.719 17 O -0.413 6.413 18 N -0.282 5.282 19 C 0.027 3.973 20 C -0.202 4.202 21 C -0.110 4.110 22 C -0.160 4.160 23 C -0.091 4.091 24 C -0.146 4.146 25 C -0.106 4.106 26 C 0.018 3.982 27 H 0.095 0.905 28 C -0.212 4.212 29 H 0.142 0.858 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.119 0.881 34 H 0.064 0.936 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.139 0.861 38 H 0.160 0.840 39 H 0.173 0.827 40 H 0.174 0.826 41 H 0.132 0.868 42 H 0.128 0.872 43 H 0.078 0.922 44 H 0.118 0.882 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.007 6.033 -17.533 19.491 hybrid contribution -0.594 0.080 1.696 1.799 sum 5.413 6.113 -15.837 17.818 Atomic orbital electron populations 1.23143 0.77519 1.04034 1.00675 1.86465 1.23111 1.35120 1.85227 1.24925 0.93230 0.80198 0.68828 1.90401 1.67537 1.37573 1.49608 1.20229 0.85585 0.86466 1.00474 1.43602 1.73999 1.08537 1.02298 1.19523 1.28468 1.04319 0.84961 0.90520 1.25550 0.98691 0.97870 1.02154 1.69573 1.41433 1.17501 1.30086 0.85069 0.77552 0.77354 0.78790 1.20676 1.21565 1.20384 1.21199 0.89895 0.97626 0.90533 1.22791 0.92002 0.78870 0.78192 1.90638 1.63646 1.36609 1.50386 1.46479 1.12438 1.42530 1.26787 1.18694 0.93748 0.92695 0.92115 1.21276 0.93514 1.02525 1.02934 1.21161 1.00939 0.95251 0.93685 1.21391 0.93552 1.01606 0.99488 1.20761 0.96055 0.94900 0.97372 1.20337 0.96109 1.01333 0.96868 1.21219 0.94224 0.98349 0.96820 1.21856 0.81296 0.97801 0.97283 0.90469 1.22081 1.03538 0.94322 1.01228 0.85778 0.94797 0.92755 0.92340 0.88071 0.93619 0.88860 0.89543 0.86126 0.83977 0.82678 0.82574 0.86835 0.87206 0.92232 0.88204 0.94163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.47 10.55 113.37 1.20 2.66 16 2 O -0.38 -17.59 10.56 -51.39 -0.54 -18.13 16 3 C 0.48 25.11 5.47 71.24 0.39 25.50 16 4 O -0.56 -31.74 16.02 21.95 0.35 -31.39 16 5 C 0.20 10.36 5.62 85.63 0.48 10.84 16 6 N -0.57 -29.51 1.55 -710.69 -1.10 -30.62 16 7 C -0.24 -13.78 9.67 84.03 0.81 -12.97 16 8 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 9 C -0.05 -2.87 5.36 84.86 0.45 -2.41 16 10 N -0.94 -54.55 7.91 21.65 0.17 -54.38 16 11 Si 0.98 46.98 29.55 68.60 2.03 49.00 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 13 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 14 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 15 C 0.14 5.92 3.95 85.63 0.34 6.26 16 16 C 0.49 20.40 7.66 87.65 0.67 21.07 16 17 O -0.54 -26.10 15.33 -3.05 -0.05 -26.15 16 18 N -0.56 -18.26 2.89 -607.17 -1.75 -20.02 16 19 C 0.12 3.49 6.59 38.28 0.25 3.74 16 20 C -0.18 -5.05 8.88 22.51 0.20 -4.85 16 21 C -0.09 -1.95 10.02 22.19 0.22 -1.73 16 22 C -0.14 -2.33 10.06 22.28 0.22 -2.10 16 23 C -0.07 -1.18 10.04 22.26 0.22 -0.96 16 24 C -0.14 -3.07 6.23 -19.64 -0.12 -3.19 16 25 C -0.07 -1.20 6.58 30.26 0.20 -1.00 16 26 C 0.12 3.07 3.65 45.23 0.16 3.24 16 27 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 28 C -0.15 -3.75 9.07 71.98 0.65 -3.10 16 29 H 0.12 3.34 8.14 -2.38 -0.02 3.32 16 30 H 0.03 1.33 8.13 -2.38 -0.02 1.31 16 31 H 0.05 1.84 8.13 -2.38 -0.02 1.82 16 32 H 0.06 2.72 8.02 -2.39 -0.02 2.71 16 33 H 0.10 5.77 6.31 -2.39 -0.02 5.76 16 34 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 35 H 0.09 3.90 6.76 -2.39 -0.02 3.89 16 36 H 0.09 3.48 6.88 -2.38 -0.02 3.46 16 37 H 0.12 3.77 4.21 -2.91 -0.01 3.75 16 38 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 39 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 40 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 41 H 0.11 1.44 7.71 -2.39 -0.02 1.42 16 42 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.04 1.28 6.76 -2.39 -0.02 1.27 16 Total: -1.00 -76.09 368.47 6.47 -69.62 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 1.01 Total: 21.06 kcal Atomic # 6 Polarization: 34.64 SS G_CDS: 6.36 Total: 41.00 kcal Atomic # 7 Polarization: -102.33 SS G_CDS: -2.68 Total: -105.01 kcal Atomic # 8 Polarization: -75.43 SS G_CDS: -0.24 Total: -75.67 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.00 kcal Total: -76.09 6.47 -69.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177621742.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.206 kcal (2) G-P(sol) polarization free energy of solvation -76.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.83 seconds