Wall clock time and date at job start Tue Mar 31 2020 18:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35991 * 116.99348 * 2 1 4 4 C 1.38564 * 120.07607 * 0.02562 * 3 2 1 5 5 C 1.38240 * 119.99798 * 179.97438 * 4 3 2 6 6 C 1.38258 * 120.14682 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.92668 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47412 * 89.99900 * 7 6 5 9 9 H 1.09004 * 109.46789 * 55.00031 * 8 7 6 10 10 C 1.53005 * 109.47229 * 295.00229 * 8 7 6 11 11 C 1.50698 * 109.47601 * 175.00162 * 8 7 6 12 12 O 1.21293 * 119.99413 * 21.63047 * 11 8 7 13 13 N 1.34769 * 120.00321 * 201.64136 * 11 8 7 14 14 C 1.37098 * 120.00057 * 5.44753 * 13 11 8 15 15 H 1.08000 * 120.00169 * 5.39423 * 14 13 11 16 16 C 1.38952 * 120.00513 * 185.38734 * 14 13 11 17 17 N 1.31414 * 119.99672 * 24.24732 * 16 14 13 18 18 Si 1.86792 * 120.00502 * 204.24503 * 16 14 13 19 19 H 1.48506 * 109.47150 * 89.99709 * 18 16 14 20 20 H 1.48502 * 109.47334 * 209.99933 * 18 16 14 21 21 H 1.48497 * 109.47174 * 330.00216 * 18 16 14 22 22 C 1.46502 * 120.00269 * 185.45543 * 13 11 8 23 23 C 1.47200 * 109.47123 * 92.19266 * 22 13 11 24 24 N 9.29782 * 156.44151 * 259.21910 * 4 1 2 25 25 C 1.38243 * 120.14795 * 359.76584 * 6 5 4 26 26 C 1.38566 * 119.99624 * 0.51200 * 25 6 5 27 27 O 1.35996 * 120.07219 * 179.74491 * 26 25 6 28 28 C 1.42901 * 116.99988 * 359.72062 * 27 26 25 29 29 H 1.08996 * 109.47222 * 299.99231 * 1 2 3 30 30 H 1.08994 * 109.47146 * 60.00141 * 1 2 3 31 31 H 1.09007 * 109.46485 * 179.97438 * 1 2 3 32 32 H 1.07992 * 120.00003 * 359.97438 * 4 3 2 33 33 H 1.07998 * 119.92648 * 179.97438 * 5 4 3 34 34 H 1.08995 * 109.47138 * 210.00408 * 7 6 5 35 35 H 1.09004 * 109.46760 * 329.99986 * 7 6 5 36 36 H 1.08995 * 109.46968 * 305.99164 * 10 8 7 37 37 H 1.08998 * 109.46744 * 65.98986 * 10 8 7 38 38 H 1.09003 * 109.47212 * 185.98790 * 10 8 7 39 39 H 0.97001 * 119.99946 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.47140 * 212.19442 * 22 13 11 41 41 H 1.08996 * 109.46701 * 332.18984 * 22 13 11 42 42 H 1.07993 * 120.00026 * 180.27186 * 25 6 5 43 43 H 1.08997 * 109.46636 * 180.02562 * 28 27 26 44 44 H 1.08994 * 109.46860 * 60.00088 * 28 27 26 45 45 H 1.09005 * 109.46921 * 300.00391 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2931 2.3748 0.0005 5 6 1.9222 3.6057 0.0011 6 6 3.3028 3.6799 0.0016 7 6 3.9835 5.0244 0.0028 8 6 4.2133 5.4785 1.4456 9 1 4.7679 4.7101 1.9843 10 6 2.8638 5.7074 2.1294 11 6 5.0021 6.7626 1.4486 12 8 5.0149 7.4687 0.4625 13 7 5.6935 7.1262 2.5468 14 6 5.7712 6.2769 3.6203 15 1 5.3534 5.2832 3.5541 16 6 6.3876 6.6946 4.7935 17 7 6.4678 7.9761 5.0734 18 14 7.1024 5.4346 5.9728 19 1 8.5193 5.1701 5.6155 20 1 7.0313 5.9590 7.3603 21 1 6.3248 4.1729 5.8801 22 6 6.3620 8.4290 2.5936 23 6 5.4567 9.4237 3.1917 24 7 4.7582 10.1916 3.6529 25 6 4.0602 2.5234 0.0065 26 6 3.4359 1.2864 0.0001 27 8 4.1796 0.1478 -0.0003 28 6 5.6003 0.3008 -0.0002 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0278 -0.0005 32 1 0.2145 2.3196 0.0005 33 1 1.3340 4.5114 0.0011 34 1 4.9417 4.9470 -0.5108 35 1 3.3537 5.7509 -0.5108 36 1 2.2663 6.3963 1.5324 37 1 2.3380 4.7572 2.2226 38 1 3.0259 6.1317 3.1203 39 1 6.8984 8.2677 5.8922 40 1 7.2665 8.3518 3.1969 41 1 6.6251 8.7388 1.5823 42 1 5.1384 2.5842 0.0113 43 1 6.0716 -0.6820 -0.0011 44 1 5.9065 0.8502 0.8900 45 1 5.9065 0.8511 -0.8900 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180858082.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:15 Heat of formation + Delta-G solvation = -48.196613 kcal Electronic energy + Delta-G solvation = -28603.449623 eV Core-core repulsion = 24587.643317 eV Total energy + Delta-G solvation = -4015.806307 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.59980 -39.18308 -38.45141 -37.35055 -35.71882 -34.40223 -33.84149 -31.71336 -30.46679 -30.24398 -27.93764 -27.35350 -27.26284 -25.91267 -24.93740 -22.61426 -22.12059 -20.87670 -19.12525 -18.41391 -17.62789 -17.15738 -16.67096 -16.41748 -16.11585 -16.06161 -15.28835 -14.77507 -14.61278 -14.58304 -14.51307 -14.12726 -13.96922 -13.67393 -13.16696 -12.96870 -12.68307 -12.56669 -12.31161 -12.09232 -11.89980 -11.87957 -11.59863 -11.36057 -11.29808 -11.27209 -11.24167 -11.19824 -11.01038 -10.88725 -10.72440 -10.50828 -10.42221 -10.35328 -10.04689 -9.34250 -8.70811 -8.50705 -8.21139 -7.69603 -6.61768 -4.07271 1.32192 1.48189 3.01216 3.13907 3.16199 3.22287 3.26458 3.54708 3.70739 3.84707 4.06208 4.22570 4.70609 4.75819 4.79631 4.89910 4.99054 5.02106 5.12053 5.15231 5.17773 5.31242 5.33441 5.45104 5.47012 5.48721 5.51514 5.60858 5.72240 5.83932 6.10322 6.16531 6.16884 6.30215 6.33927 6.34926 6.52391 6.64883 6.71684 6.72924 6.77055 6.85833 7.01963 7.28013 7.40093 7.57073 8.13178 8.86678 8.92979 9.23516 9.63400 10.42070 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.003326 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.296655 B = 8417.266667 C = 9305.778211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.310 6.310 3 C 0.085 3.915 4 C -0.171 4.171 5 C -0.111 4.111 6 C -0.062 4.062 7 C -0.060 4.060 8 C -0.085 4.085 9 H 0.091 0.909 10 C -0.137 4.137 11 C 0.467 3.533 12 O -0.601 6.601 13 N -0.440 5.440 14 C -0.341 4.341 15 H 0.110 0.890 16 C 0.040 3.960 17 N -0.865 5.865 18 Si 0.921 3.079 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.269 1.269 22 C 0.225 3.775 23 C 0.261 3.739 24 N -0.488 5.488 25 C -0.168 4.168 26 C 0.099 3.901 27 O -0.310 6.310 28 C 0.025 3.975 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.132 0.868 33 H 0.127 0.873 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.050 0.950 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.275 0.725 40 H 0.127 0.873 41 H 0.090 0.910 42 H 0.136 0.864 43 H 0.097 0.903 44 H 0.058 0.942 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.447 -14.838 -8.416 17.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.224 6.224 3 C 0.040 3.960 4 C -0.189 4.189 5 C -0.130 4.130 6 C -0.063 4.063 7 C -0.098 4.098 8 C -0.106 4.106 9 H 0.109 0.891 10 C -0.194 4.194 11 C 0.257 3.743 12 O -0.487 6.487 13 N -0.159 5.159 14 C -0.468 4.468 15 H 0.128 0.872 16 C -0.166 4.166 17 N -0.503 5.503 18 Si 0.747 3.253 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.193 1.193 22 C 0.099 3.901 23 C -0.057 4.057 24 N -0.168 5.168 25 C -0.186 4.186 26 C 0.054 3.946 27 O -0.224 6.224 28 C -0.070 4.070 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.149 0.851 33 H 0.145 0.855 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.145 0.855 41 H 0.107 0.893 42 H 0.154 0.846 43 H 0.115 0.885 44 H 0.076 0.924 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.350 -13.621 -8.031 16.693 hybrid contribution 0.588 -0.592 0.894 1.222 sum -4.763 -14.213 -7.137 16.602 Atomic orbital electron populations 1.23015 0.78986 1.03606 1.01143 1.86145 1.20663 1.26191 1.89425 1.18194 0.89101 0.85056 1.03612 1.21013 0.99665 0.91530 1.06728 1.20817 0.94037 0.96960 1.01143 1.19735 0.93309 0.94969 0.98245 1.20432 1.00732 0.91927 0.96668 1.20978 0.97232 0.96648 0.95776 0.89096 1.21695 0.95166 1.01234 1.01342 1.20128 0.81904 0.88628 0.83680 1.90549 1.66799 1.56678 1.34635 1.43706 1.44246 1.13772 1.14189 1.19751 1.39103 0.96289 0.91665 0.87241 1.25197 0.97282 0.96482 0.97618 1.69930 1.40457 1.14140 1.25746 0.86010 0.79757 0.80500 0.79008 1.20007 1.21030 1.19341 1.18704 0.93283 0.79206 0.98929 1.29215 0.93262 0.92574 0.90652 1.80841 1.10603 1.13120 1.12275 1.21016 1.00514 0.90470 1.06633 1.18211 0.88142 0.86024 1.02227 1.86133 1.18645 1.28423 1.89205 1.23068 0.78680 1.03628 1.01602 0.92800 0.92905 0.88538 0.85069 0.85466 0.90848 0.90211 0.93065 0.92444 0.91387 0.91379 0.85513 0.89263 0.84620 0.88457 0.92374 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.02 10.28 -34.22 -0.35 -4.37 16 3 C 0.09 1.16 6.70 -39.12 -0.26 0.90 16 4 C -0.17 -2.04 9.04 -39.46 -0.36 -2.40 16 5 C -0.11 -1.42 8.11 -39.57 -0.32 -1.74 16 6 C -0.06 -0.86 4.72 -104.61 -0.49 -1.35 16 7 C -0.06 -0.92 4.24 -27.88 -0.12 -1.04 16 8 C -0.09 -1.50 1.92 -91.77 -0.18 -1.68 16 9 H 0.09 1.59 6.36 -51.93 -0.33 1.26 16 10 C -0.14 -2.32 8.51 37.16 0.32 -2.00 16 11 C 0.47 10.04 6.77 -10.99 -0.07 9.96 16 12 O -0.60 -14.14 15.67 5.55 0.09 -14.06 16 13 N -0.44 -9.87 2.59 -117.94 -0.31 -10.17 16 14 C -0.34 -7.68 8.78 -14.93 -0.13 -7.82 16 15 H 0.11 2.34 5.90 -52.49 -0.31 2.03 16 16 C 0.04 0.90 4.97 -17.47 -0.09 0.81 16 17 N -0.87 -20.81 8.96 55.50 0.50 -20.31 16 18 Si 0.92 18.04 29.62 -169.99 -5.03 13.00 16 19 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 20 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 21 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 22 C 0.23 4.91 5.26 -6.83 -0.04 4.87 16 23 C 0.26 6.28 13.58 -20.77 -0.28 6.00 16 24 N -0.49 -12.45 18.54 42.15 0.78 -11.67 16 25 C -0.17 -2.25 8.69 -39.46 -0.34 -2.59 16 26 C 0.10 1.40 6.70 -39.12 -0.26 1.13 16 27 O -0.31 -4.22 10.28 -34.23 -0.35 -4.57 16 28 C 0.03 0.24 9.81 101.05 0.99 1.24 16 29 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 30 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 31 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.13 1.23 6.30 -52.49 -0.33 0.89 16 33 H 0.13 1.47 8.04 -52.49 -0.42 1.05 16 34 H 0.07 1.13 8.09 -51.93 -0.42 0.71 16 35 H 0.08 1.27 7.99 -51.93 -0.41 0.86 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.85 6.67 -51.93 -0.35 0.51 16 38 H 0.07 1.30 7.71 -51.93 -0.40 0.90 16 39 H 0.28 6.44 8.31 -40.82 -0.34 6.10 16 40 H 0.13 2.73 6.21 -51.93 -0.32 2.40 16 41 H 0.09 1.80 7.29 -51.93 -0.38 1.42 16 42 H 0.14 1.62 6.30 -52.49 -0.33 1.29 16 43 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.54 7.65 -51.93 -0.40 0.14 16 45 H 0.05 0.47 7.68 -51.93 -0.40 0.07 16 LS Contribution 375.10 15.07 5.65 5.65 Total: -1.00 -29.91 375.10 -5.67 -35.57 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -6.00 Total: 5.42 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -0.64 Total: 5.51 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.97 Total: -42.16 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.62 Total: -23.00 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.91 -5.67 -35.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180858082.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.622 kcal (2) G-P(sol) polarization free energy of solvation -29.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds