Wall clock time and date at job start Tue Mar 31 2020 18:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35991 * 116.99348 * 2 1 4 4 C 1.38564 * 120.07607 * 0.02562 * 3 2 1 5 5 C 1.38240 * 119.99798 * 179.97438 * 4 3 2 6 6 C 1.38258 * 120.14682 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.92668 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47412 * 89.99900 * 7 6 5 9 9 H 1.09004 * 109.46789 * 55.00031 * 8 7 6 10 10 C 1.53005 * 109.47229 * 295.00229 * 8 7 6 11 11 C 1.50698 * 109.47601 * 175.00162 * 8 7 6 12 12 O 1.21293 * 119.99413 * 21.63047 * 11 8 7 13 13 N 1.34769 * 120.00321 * 201.64136 * 11 8 7 14 14 C 1.37098 * 120.00057 * 5.44753 * 13 11 8 15 15 H 1.08000 * 120.00169 * 5.39423 * 14 13 11 16 16 C 1.38952 * 120.00513 * 185.38734 * 14 13 11 17 17 N 1.31414 * 119.99672 * 24.24732 * 16 14 13 18 18 Si 1.86792 * 120.00502 * 204.24503 * 16 14 13 19 19 H 1.48506 * 109.47150 * 89.99709 * 18 16 14 20 20 H 1.48502 * 109.47334 * 209.99933 * 18 16 14 21 21 H 1.48497 * 109.47174 * 330.00216 * 18 16 14 22 22 C 1.46502 * 120.00269 * 185.45543 * 13 11 8 23 23 C 1.47200 * 109.47123 * 92.19266 * 22 13 11 24 24 N 9.29782 * 156.44151 * 259.21910 * 4 1 2 25 25 C 1.38243 * 120.14795 * 359.76584 * 6 5 4 26 26 C 1.38566 * 119.99624 * 0.51200 * 25 6 5 27 27 O 1.35996 * 120.07219 * 179.74491 * 26 25 6 28 28 C 1.42901 * 116.99988 * 359.72062 * 27 26 25 29 29 H 1.08996 * 109.47222 * 299.99231 * 1 2 3 30 30 H 1.08994 * 109.47146 * 60.00141 * 1 2 3 31 31 H 1.09007 * 109.46485 * 179.97438 * 1 2 3 32 32 H 1.07992 * 120.00003 * 359.97438 * 4 3 2 33 33 H 1.07998 * 119.92648 * 179.97438 * 5 4 3 34 34 H 1.08995 * 109.47138 * 210.00408 * 7 6 5 35 35 H 1.09004 * 109.46760 * 329.99986 * 7 6 5 36 36 H 1.08995 * 109.46968 * 305.99164 * 10 8 7 37 37 H 1.08998 * 109.46744 * 65.98986 * 10 8 7 38 38 H 1.09003 * 109.47212 * 185.98790 * 10 8 7 39 39 H 0.97001 * 119.99946 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.47140 * 212.19442 * 22 13 11 41 41 H 1.08996 * 109.46701 * 332.18984 * 22 13 11 42 42 H 1.07993 * 120.00026 * 180.27186 * 25 6 5 43 43 H 1.08997 * 109.46636 * 180.02562 * 28 27 26 44 44 H 1.08994 * 109.46860 * 60.00088 * 28 27 26 45 45 H 1.09005 * 109.46921 * 300.00391 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2931 2.3748 0.0005 5 6 1.9222 3.6057 0.0011 6 6 3.3028 3.6799 0.0016 7 6 3.9835 5.0244 0.0028 8 6 4.2133 5.4785 1.4456 9 1 4.7679 4.7101 1.9843 10 6 2.8638 5.7074 2.1294 11 6 5.0021 6.7626 1.4486 12 8 5.0149 7.4687 0.4625 13 7 5.6935 7.1262 2.5468 14 6 5.7712 6.2769 3.6203 15 1 5.3534 5.2832 3.5541 16 6 6.3876 6.6946 4.7935 17 7 6.4678 7.9761 5.0734 18 14 7.1024 5.4346 5.9728 19 1 8.5193 5.1701 5.6155 20 1 7.0313 5.9590 7.3603 21 1 6.3248 4.1729 5.8801 22 6 6.3620 8.4290 2.5936 23 6 5.4567 9.4237 3.1917 24 7 4.7582 10.1916 3.6529 25 6 4.0602 2.5234 0.0065 26 6 3.4359 1.2864 0.0001 27 8 4.1796 0.1478 -0.0003 28 6 5.6003 0.3008 -0.0002 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0278 -0.0005 32 1 0.2145 2.3196 0.0005 33 1 1.3340 4.5114 0.0011 34 1 4.9417 4.9470 -0.5108 35 1 3.3537 5.7509 -0.5108 36 1 2.2663 6.3963 1.5324 37 1 2.3380 4.7572 2.2226 38 1 3.0259 6.1317 3.1203 39 1 6.8984 8.2677 5.8922 40 1 7.2665 8.3518 3.1969 41 1 6.6251 8.7388 1.5823 42 1 5.1384 2.5842 0.0113 43 1 6.0716 -0.6820 -0.0011 44 1 5.9065 0.8502 0.8900 45 1 5.9065 0.8511 -0.8900 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180858082.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:14 Heat of formation + Delta-G solvation = -63.865108 kcal Electronic energy + Delta-G solvation = -28604.129060 eV Core-core repulsion = 24587.643317 eV Total energy + Delta-G solvation = -4016.485743 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.57233 -40.80272 -39.33707 -38.45930 -37.46970 -36.27601 -35.17651 -33.47046 -31.56085 -31.20352 -29.41829 -28.46405 -28.02211 -27.07562 -26.63333 -23.93976 -23.05570 -22.02379 -20.79358 -19.47285 -19.19490 -18.36654 -17.87181 -17.75018 -17.60299 -16.95846 -16.31546 -16.16995 -16.07818 -15.73748 -15.62364 -15.38490 -15.19728 -15.00631 -14.54853 -14.39069 -14.11313 -13.83605 -13.60521 -13.40812 -13.22651 -13.11185 -12.99270 -12.92041 -12.86070 -12.67400 -12.39460 -12.27745 -12.15938 -12.03951 -12.01290 -11.95370 -11.90430 -11.63912 -11.45173 -11.09489 -10.28709 -9.99765 -9.60430 -8.67810 -8.36374 -5.86191 0.35422 0.47896 1.44235 1.54861 1.63357 1.80398 2.08012 2.29928 2.38588 2.41836 2.42834 2.73875 3.03419 3.13449 3.70244 3.81813 3.91146 4.10040 4.13769 4.19443 4.30596 4.38594 4.44284 4.44831 4.46288 4.50019 4.52541 4.57466 4.72490 4.77759 4.79060 4.81739 4.94555 4.96127 4.99029 5.03676 5.24014 5.30817 5.36268 5.39290 5.54088 5.67137 5.74304 5.78564 6.16547 6.36973 6.67458 7.01788 7.11097 7.50426 7.89921 8.67319 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.003326 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.296655 B = 8417.266667 C = 9305.778211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.332 6.332 3 C 0.075 3.925 4 C -0.166 4.166 5 C -0.114 4.114 6 C -0.073 4.073 7 C -0.048 4.048 8 C -0.079 4.079 9 H 0.095 0.905 10 C -0.128 4.128 11 C 0.461 3.539 12 O -0.624 6.624 13 N -0.451 5.451 14 C -0.348 4.348 15 H 0.120 0.880 16 C 0.004 3.996 17 N -0.894 5.894 18 Si 0.983 3.017 19 H -0.268 1.268 20 H -0.296 1.296 21 H -0.262 1.262 22 C 0.226 3.774 23 C 0.269 3.731 24 N -0.520 5.520 25 C -0.170 4.170 26 C 0.082 3.918 27 O -0.329 6.329 28 C 0.018 3.982 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.115 0.885 32 H 0.158 0.842 33 H 0.139 0.861 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.051 0.949 37 H 0.080 0.920 38 H 0.042 0.958 39 H 0.272 0.728 40 H 0.130 0.870 41 H 0.104 0.896 42 H 0.145 0.855 43 H 0.118 0.882 44 H 0.059 0.941 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.039 -16.798 -8.682 19.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.030 3.970 4 C -0.184 4.184 5 C -0.132 4.132 6 C -0.074 4.074 7 C -0.086 4.086 8 C -0.100 4.100 9 H 0.113 0.887 10 C -0.185 4.185 11 C 0.252 3.748 12 O -0.511 6.511 13 N -0.169 5.169 14 C -0.474 4.474 15 H 0.138 0.862 16 C -0.199 4.199 17 N -0.532 5.532 18 Si 0.808 3.192 19 H -0.194 1.194 20 H -0.223 1.223 21 H -0.186 1.186 22 C 0.099 3.901 23 C -0.048 4.048 24 N -0.201 5.201 25 C -0.188 4.188 26 C 0.037 3.963 27 O -0.244 6.244 28 C -0.076 4.076 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.134 0.866 32 H 0.176 0.824 33 H 0.157 0.843 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.148 0.852 41 H 0.122 0.878 42 H 0.162 0.838 43 H 0.137 0.863 44 H 0.078 0.922 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.947 -15.600 -8.310 18.649 hybrid contribution 0.723 -0.026 0.925 1.175 sum -5.224 -15.627 -7.385 18.056 Atomic orbital electron populations 1.23325 0.76734 1.05361 1.02207 1.86119 1.23092 1.26127 1.89325 1.18486 0.89364 0.85841 1.03334 1.21263 1.00972 0.90611 1.05578 1.20996 0.93711 0.97827 1.00642 1.19598 0.93859 0.94031 0.99898 1.20259 1.00719 0.92746 0.94828 1.20976 0.96878 0.94596 0.97581 0.88741 1.21620 0.94966 1.02289 0.99648 1.20845 0.81387 0.89611 0.82957 1.90528 1.67414 1.57757 1.35375 1.43925 1.44627 1.13840 1.14557 1.20053 1.39014 0.96656 0.91713 0.86250 1.25891 0.97279 0.97770 0.98923 1.70016 1.41421 1.15625 1.26184 0.85064 0.79268 0.78553 0.76356 1.19358 1.22271 1.18557 1.18834 0.92824 0.78885 0.99538 1.29711 0.92859 0.92266 0.89940 1.80823 1.11671 1.14161 1.13421 1.21099 1.01055 0.90259 1.06405 1.18452 0.88793 0.86298 1.02793 1.86106 1.20375 1.28630 1.89271 1.23311 0.77026 1.05217 1.02073 0.91841 0.91603 0.86634 0.82408 0.84313 0.91132 0.90874 0.93011 0.90094 0.93908 0.91723 0.85235 0.87780 0.83758 0.86338 0.92215 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.33 -8.04 10.28 -79.58 -0.82 -8.86 16 3 C 0.07 1.91 6.70 22.57 0.15 2.06 16 4 C -0.17 -3.57 9.04 22.35 0.20 -3.37 16 5 C -0.11 -2.65 8.11 22.27 0.18 -2.47 16 6 C -0.07 -1.92 4.72 -19.86 -0.09 -2.01 16 7 C -0.05 -1.42 4.24 29.85 0.13 -1.29 16 8 C -0.08 -2.72 1.92 -11.54 -0.02 -2.74 16 9 H 0.09 3.17 6.36 -2.39 -0.02 3.16 16 10 C -0.13 -4.17 8.51 71.98 0.61 -3.56 16 11 C 0.46 19.60 6.77 87.66 0.59 20.19 16 12 O -0.62 -29.16 15.67 -3.07 -0.05 -29.21 16 13 N -0.45 -20.03 2.59 -645.43 -1.67 -21.70 16 14 C -0.35 -15.38 8.78 84.04 0.74 -14.64 16 15 H 0.12 4.95 5.90 -2.91 -0.02 4.93 16 16 C 0.00 0.16 4.97 84.93 0.42 0.59 16 17 N -0.89 -42.96 8.96 21.66 0.19 -42.77 16 18 Si 0.98 36.26 29.62 68.60 2.03 38.29 16 19 H -0.27 -9.59 7.11 99.48 0.71 -8.88 16 20 H -0.30 -11.44 7.11 99.48 0.71 -10.74 16 21 H -0.26 -9.26 7.11 99.48 0.71 -8.56 16 22 C 0.23 9.83 5.26 84.57 0.44 10.27 16 23 C 0.27 13.06 13.58 89.44 1.21 14.27 16 24 N -0.52 -26.78 18.54 20.00 0.37 -26.41 16 25 C -0.17 -4.33 8.69 22.35 0.19 -4.13 16 26 C 0.08 2.21 6.70 22.57 0.15 2.36 16 27 O -0.33 -8.62 10.28 -79.63 -0.82 -9.44 16 28 C 0.02 0.32 9.81 113.37 1.11 1.43 16 29 H 0.06 0.76 7.66 -2.39 -0.02 0.74 16 30 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 31 H 0.12 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.16 2.43 6.30 -2.91 -0.02 2.41 16 33 H 0.14 2.86 8.04 -2.91 -0.02 2.84 16 34 H 0.07 2.11 8.09 -2.39 -0.02 2.09 16 35 H 0.07 2.26 7.99 -2.38 -0.02 2.24 16 36 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.08 2.25 6.67 -2.39 -0.02 2.23 16 38 H 0.04 1.60 7.71 -2.39 -0.02 1.59 16 39 H 0.27 12.79 8.31 -92.71 -0.77 12.02 16 40 H 0.13 5.58 6.21 -2.39 -0.01 5.57 16 41 H 0.10 4.17 7.29 -2.39 -0.02 4.16 16 42 H 0.14 3.27 6.30 -2.91 -0.02 3.26 16 43 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.06 1.03 7.65 -2.39 -0.02 1.01 16 45 H 0.06 1.00 7.68 -2.38 -0.02 0.98 16 Total: -1.00 -63.14 375.10 7.40 -55.74 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 1.02 Total: 26.02 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: 7.14 Total: 18.34 kcal Atomic # 7 Polarization: -89.77 SS G_CDS: -1.10 Total: -90.88 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: -1.69 Total: -47.50 kcal Atomic # 14 Polarization: 36.26 SS G_CDS: 2.03 Total: 38.29 kcal Total: -63.14 7.40 -55.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180858082.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.127 kcal (2) G-P(sol) polarization free energy of solvation -63.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds