Wall clock time and date at job start Tue Mar 31 2020 17:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09003 * 109.66092 * 2 1 4 4 C 1.50436 * 109.56926 * 120.30237 * 2 1 3 5 5 O 1.21279 * 118.48745 * 287.09364 * 4 2 1 6 6 N 1.33377 * 123.02458 * 107.11195 * 4 2 1 7 7 C 1.46494 * 117.70977 * 184.29386 * 6 4 2 8 8 C 1.45651 * 124.58574 * 4.32567 * 6 4 2 9 9 C 1.53461 * 110.74143 * 337.97398 * 8 6 4 10 10 N 1.47046 * 109.56663 * 239.71077 * 2 1 3 11 11 C 1.34781 * 121.35396 * 102.89001 * 10 2 1 12 12 O 1.21277 * 120.00084 * 0.02562 * 11 10 2 13 13 C 1.50703 * 119.99969 * 179.97438 * 11 10 2 14 14 C 1.50697 * 109.47002 * 180.02562 * 13 11 10 15 15 C 1.38323 * 119.96778 * 270.23129 * 14 13 11 16 16 C 1.38273 * 120.14047 * 180.27622 * 15 14 13 17 17 C 1.38126 * 120.06661 * 359.77595 * 16 15 14 18 18 C 1.38851 * 119.93315 * 359.97111 * 17 16 15 19 19 O 1.35750 * 120.07342 * 180.02562 * 18 17 16 20 20 C 1.34829 * 116.99785 * 354.44261 * 19 18 17 21 21 H 1.07996 * 119.99911 * 5.06109 * 20 19 18 22 22 C 1.38650 * 119.99998 * 185.05169 * 20 19 18 23 23 N 1.31556 * 120.00413 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99974 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47191 * 90.00341 * 24 22 20 26 26 H 1.48509 * 109.47319 * 210.00267 * 24 22 20 27 27 H 1.48498 * 109.47153 * 329.99933 * 24 22 20 28 28 C 1.38075 * 119.96151 * 90.00214 * 14 13 11 29 29 H 1.09004 * 109.46321 * 180.29115 * 1 2 3 30 30 H 1.08997 * 109.46647 * 300.28860 * 1 2 3 31 31 H 1.08993 * 109.47044 * 60.29330 * 1 2 3 32 32 H 1.09001 * 109.46856 * 0.02562 * 7 6 4 33 33 H 1.09001 * 109.46882 * 120.00317 * 7 6 4 34 34 H 1.08995 * 109.47718 * 240.00676 * 7 6 4 35 35 H 1.09005 * 109.22082 * 98.43324 * 8 6 4 36 36 H 1.09000 * 109.21549 * 217.80570 * 8 6 4 37 37 H 1.09006 * 109.85020 * 287.31967 * 9 8 6 38 38 H 1.08999 * 109.84375 * 166.51147 * 9 8 6 39 39 H 1.08999 * 109.46991 * 60.00179 * 13 11 10 40 40 H 1.08998 * 109.47142 * 300.00534 * 13 11 10 41 41 H 1.07997 * 119.92816 * 0.02562 * 15 14 13 42 42 H 1.07995 * 119.97195 * 179.74420 * 16 15 14 43 43 H 1.08002 * 120.03627 * 179.97438 * 17 16 15 44 44 H 0.97001 * 120.00413 * 179.97438 * 23 22 20 45 45 H 1.07999 * 120.03863 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8968 1.0265 0.0000 4 6 2.0340 -0.7152 1.2238 5 8 1.9325 -0.1635 2.2991 6 7 2.5875 -1.9279 1.1807 7 6 2.9505 -2.5566 2.4531 8 6 2.8569 -2.6708 -0.0428 9 6 1.9680 -2.1705 -1.1893 10 7 2.0226 -0.6988 -1.1964 11 6 2.4994 -0.0199 -2.2586 12 8 2.5288 1.1924 -2.2400 13 6 2.9970 -0.7672 -3.4690 14 6 3.4729 0.2168 -4.5063 15 6 2.5896 0.7052 -5.4521 16 6 3.0238 1.6039 -6.4091 17 6 4.3408 2.0203 -6.4204 18 6 5.2288 1.5359 -5.4691 19 8 6.5236 1.9436 -5.4773 20 6 6.9115 2.7290 -6.5022 21 1 6.1853 3.0730 -7.2238 22 6 8.2427 3.0952 -6.6297 23 7 9.1274 2.6760 -5.7509 24 14 8.7801 4.1839 -8.0494 25 1 8.6847 5.6092 -7.6438 26 1 10.1843 3.8657 -8.4133 27 1 7.8986 3.9422 -9.2197 28 6 4.7893 0.6336 -4.5087 29 1 -0.3632 -1.0277 0.0052 30 1 -0.3632 0.5183 0.8874 31 1 -0.3633 0.5092 -0.8925 32 1 2.6922 -1.8889 3.2750 33 1 2.4067 -3.4949 2.5630 34 1 4.0224 -2.7540 2.4682 35 1 3.9044 -2.5437 -0.3165 36 1 2.6568 -3.7285 0.1283 37 1 0.9408 -2.4996 -1.0319 38 1 2.3370 -2.5569 -2.1393 39 1 2.1876 -1.3688 -3.8827 40 1 3.8223 -1.4180 -3.1803 41 1 1.5595 0.3808 -5.4456 42 1 2.3328 1.9802 -7.1487 43 1 4.6795 2.7219 -7.1683 44 1 10.0587 2.9318 -5.8404 45 1 5.4776 0.2551 -3.7675 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188416587.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:47 Heat of formation + Delta-G solvation = -54.126107 kcal Electronic energy + Delta-G solvation = -28255.769784 eV Core-core repulsion = 24239.706356 eV Total energy + Delta-G solvation = -4016.063429 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.23416 -39.61593 -38.75137 -36.90261 -36.43154 -35.35767 -32.75236 -32.22189 -31.38021 -29.79131 -29.13980 -27.47262 -27.00343 -25.23879 -24.36812 -23.85412 -21.72178 -21.27131 -20.04790 -18.31441 -17.88825 -17.65401 -17.42848 -16.88159 -16.53209 -16.10310 -15.50260 -15.26026 -14.99799 -14.44349 -14.42390 -14.37703 -14.09521 -13.76322 -13.50106 -13.40294 -13.15002 -12.96261 -12.78094 -12.58730 -12.43249 -12.36812 -12.33942 -11.99682 -11.89917 -11.71708 -11.53340 -11.25312 -10.81362 -10.77689 -10.60881 -10.42934 -10.38593 -9.78799 -9.31290 -9.19269 -8.92733 -8.80813 -8.05565 -7.19542 -6.41230 -4.00298 2.04708 2.24554 2.39523 2.44572 2.60655 2.78482 3.15473 3.15768 3.20600 3.96054 3.99489 4.18718 4.40992 4.57717 4.64718 4.76396 4.82131 4.89471 4.90169 5.03027 5.09291 5.10404 5.11682 5.19406 5.29771 5.36172 5.44111 5.52287 5.53399 5.63507 5.75143 5.79225 5.86323 5.94332 6.07609 6.19684 6.35459 6.66718 6.93045 6.97977 7.09574 7.11113 7.27058 7.39144 7.46643 7.74490 7.84549 8.03739 8.10967 9.04549 9.75253 10.77021 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018252 B = 0.002530 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.700379 B =11065.136549 C =11744.980293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.130 3.870 3 H 0.130 0.870 4 C 0.517 3.483 5 O -0.542 6.542 6 N -0.606 5.606 7 C 0.068 3.932 8 C 0.097 3.903 9 C 0.092 3.908 10 N -0.625 5.625 11 C 0.522 3.478 12 O -0.507 6.507 13 C -0.090 4.090 14 C -0.036 4.036 15 C -0.196 4.196 16 C -0.075 4.075 17 C -0.230 4.230 18 C 0.155 3.845 19 O -0.179 6.179 20 C -0.391 4.391 21 H 0.091 0.909 22 C 0.039 3.961 23 N -0.864 5.864 24 Si 0.940 3.060 25 H -0.273 1.273 26 H -0.278 1.278 27 H -0.268 1.268 28 C -0.174 4.174 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.126 0.874 44 H 0.269 0.731 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.947 -15.152 9.358 23.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.024 3.976 3 H 0.148 0.852 4 C 0.304 3.696 5 O -0.419 6.419 6 N -0.339 5.339 7 C -0.075 4.075 8 C -0.027 4.027 9 C -0.031 4.031 10 N -0.363 5.363 11 C 0.310 3.690 12 O -0.380 6.380 13 C -0.130 4.130 14 C -0.037 4.037 15 C -0.215 4.215 16 C -0.093 4.093 17 C -0.249 4.249 18 C 0.101 3.899 19 O -0.083 6.083 20 C -0.467 4.467 21 H 0.109 0.891 22 C -0.165 4.165 23 N -0.499 5.499 24 Si 0.765 3.235 25 H -0.199 1.199 26 H -0.203 1.203 27 H -0.192 1.192 28 C -0.193 4.193 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.129 0.871 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.125 0.875 43 H 0.144 0.856 44 H 0.079 0.921 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -15.509 -14.171 10.082 23.302 hybrid contribution 0.329 0.381 -0.748 0.902 sum -15.180 -13.790 9.335 22.533 Atomic orbital electron populations 1.21988 0.92127 1.02725 1.03957 1.21285 0.96184 0.98874 0.81232 0.85211 1.20315 0.77145 0.81075 0.91028 1.90724 1.56752 1.64554 1.29886 1.47096 1.61275 1.17544 1.08002 1.21824 1.00507 0.98379 0.86790 1.21915 1.00546 0.96394 0.83876 1.22204 1.00818 0.80307 0.99819 1.48442 1.64921 1.06463 1.16503 1.20863 0.76532 0.88255 0.83301 1.90781 1.53029 1.13788 1.80366 1.20618 1.02192 0.97922 0.92264 1.18635 0.93056 0.97122 0.94870 1.20328 0.98089 1.03858 0.99182 1.20677 0.94972 0.96265 0.97364 1.21185 0.94024 1.06422 1.03282 1.19271 0.85762 0.91760 0.93077 1.83976 1.20288 1.59353 1.44694 1.21314 0.93777 1.27225 1.04389 0.89115 1.25272 0.94606 0.98033 0.98612 1.70039 1.02733 1.42790 1.34378 0.85723 0.78344 0.79524 0.79893 1.19903 1.20287 1.19219 1.19935 0.95418 1.02370 1.01572 0.92187 0.90401 0.90608 0.88970 0.92010 0.91968 0.90696 0.89169 0.89991 0.87118 0.88170 0.88144 0.87941 0.87461 0.85605 0.92091 0.86887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.38 37.16 0.35 -1.00 16 2 C 0.13 1.49 3.06 -68.91 -0.21 1.28 16 3 H 0.13 1.83 7.23 -51.93 -0.38 1.45 16 4 C 0.52 6.17 6.84 -11.74 -0.08 6.09 16 5 O -0.54 -8.22 15.97 5.56 0.09 -8.13 16 6 N -0.61 -5.40 3.20 -182.49 -0.58 -5.98 16 7 C 0.07 0.49 10.43 59.84 0.62 1.12 16 8 C 0.10 0.55 6.60 -4.26 -0.03 0.52 16 9 C 0.09 0.52 6.34 -3.38 -0.02 0.50 16 10 N -0.63 -6.44 2.62 -166.25 -0.44 -6.87 16 11 C 0.52 7.22 7.72 -10.98 -0.08 7.13 16 12 O -0.51 -9.65 15.59 5.56 0.09 -9.56 16 13 C -0.09 -1.10 4.20 -29.03 -0.12 -1.22 16 14 C -0.04 -0.64 4.37 -104.65 -0.46 -1.10 16 15 C -0.20 -3.42 9.70 -39.54 -0.38 -3.81 16 16 C -0.07 -1.41 10.04 -39.61 -0.40 -1.81 16 17 C -0.23 -5.15 9.17 -39.40 -0.36 -5.51 16 18 C 0.15 3.84 6.65 -39.11 -0.26 3.58 16 19 O -0.18 -5.24 9.76 0.05 0.00 -5.24 16 20 C -0.39 -11.13 9.49 30.88 0.29 -10.83 16 21 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 22 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 23 N -0.86 -25.70 13.67 55.48 0.76 -24.95 16 24 Si 0.94 20.84 29.55 -169.99 -5.02 15.81 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 28 C -0.17 -3.74 9.65 -39.39 -0.38 -4.12 16 29 H 0.06 0.44 7.49 -51.93 -0.39 0.05 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.86 6.59 -51.93 -0.34 0.52 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.25 8.07 -51.93 -0.42 -0.17 16 37 H 0.08 0.35 7.49 -51.93 -0.39 -0.04 16 38 H 0.11 0.40 6.03 -51.93 -0.31 0.09 16 39 H 0.10 0.87 7.76 -51.93 -0.40 0.46 16 40 H 0.10 1.00 7.83 -51.93 -0.41 0.59 16 41 H 0.10 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 43 H 0.13 2.81 5.64 -52.49 -0.30 2.52 16 44 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.11 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 373.32 15.07 5.63 5.63 Total: -1.00 -37.33 373.32 -7.22 -44.55 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -6.12 Total: 2.92 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -1.62 Total: -8.18 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: -0.26 Total: -37.80 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: 0.18 Total: -22.93 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.33 -7.22 -44.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188416587.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.578 kcal (2) G-P(sol) polarization free energy of solvation -37.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds