Wall clock time and date at job start Tue Mar 31 2020 17:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09003 * 109.66092 * 2 1 4 4 C 1.50436 * 109.56926 * 120.30237 * 2 1 3 5 5 O 1.21279 * 118.48745 * 287.09364 * 4 2 1 6 6 N 1.33377 * 123.02458 * 107.11195 * 4 2 1 7 7 C 1.46494 * 117.70977 * 184.29386 * 6 4 2 8 8 C 1.45651 * 124.58574 * 4.32567 * 6 4 2 9 9 C 1.53461 * 110.74143 * 337.97398 * 8 6 4 10 10 N 1.47046 * 109.56663 * 239.71077 * 2 1 3 11 11 C 1.34781 * 121.35396 * 102.89001 * 10 2 1 12 12 O 1.21277 * 120.00084 * 0.02562 * 11 10 2 13 13 C 1.50703 * 119.99969 * 179.97438 * 11 10 2 14 14 C 1.50697 * 109.47002 * 180.02562 * 13 11 10 15 15 C 1.38323 * 119.96778 * 270.23129 * 14 13 11 16 16 C 1.38273 * 120.14047 * 180.27622 * 15 14 13 17 17 C 1.38126 * 120.06661 * 359.77595 * 16 15 14 18 18 C 1.38851 * 119.93315 * 359.97111 * 17 16 15 19 19 O 1.35750 * 120.07342 * 180.02562 * 18 17 16 20 20 C 1.34829 * 116.99785 * 354.44261 * 19 18 17 21 21 H 1.07996 * 119.99911 * 5.06109 * 20 19 18 22 22 C 1.38650 * 119.99998 * 185.05169 * 20 19 18 23 23 N 1.31556 * 120.00413 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99974 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47191 * 90.00341 * 24 22 20 26 26 H 1.48509 * 109.47319 * 210.00267 * 24 22 20 27 27 H 1.48498 * 109.47153 * 329.99933 * 24 22 20 28 28 C 1.38075 * 119.96151 * 90.00214 * 14 13 11 29 29 H 1.09004 * 109.46321 * 180.29115 * 1 2 3 30 30 H 1.08997 * 109.46647 * 300.28860 * 1 2 3 31 31 H 1.08993 * 109.47044 * 60.29330 * 1 2 3 32 32 H 1.09001 * 109.46856 * 0.02562 * 7 6 4 33 33 H 1.09001 * 109.46882 * 120.00317 * 7 6 4 34 34 H 1.08995 * 109.47718 * 240.00676 * 7 6 4 35 35 H 1.09005 * 109.22082 * 98.43324 * 8 6 4 36 36 H 1.09000 * 109.21549 * 217.80570 * 8 6 4 37 37 H 1.09006 * 109.85020 * 287.31967 * 9 8 6 38 38 H 1.08999 * 109.84375 * 166.51147 * 9 8 6 39 39 H 1.08999 * 109.46991 * 60.00179 * 13 11 10 40 40 H 1.08998 * 109.47142 * 300.00534 * 13 11 10 41 41 H 1.07997 * 119.92816 * 0.02562 * 15 14 13 42 42 H 1.07995 * 119.97195 * 179.74420 * 16 15 14 43 43 H 1.08002 * 120.03627 * 179.97438 * 17 16 15 44 44 H 0.97001 * 120.00413 * 179.97438 * 23 22 20 45 45 H 1.07999 * 120.03863 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8968 1.0265 0.0000 4 6 2.0340 -0.7152 1.2238 5 8 1.9325 -0.1635 2.2991 6 7 2.5875 -1.9279 1.1807 7 6 2.9505 -2.5566 2.4531 8 6 2.8569 -2.6708 -0.0428 9 6 1.9680 -2.1705 -1.1893 10 7 2.0226 -0.6988 -1.1964 11 6 2.4994 -0.0199 -2.2586 12 8 2.5288 1.1924 -2.2400 13 6 2.9970 -0.7672 -3.4690 14 6 3.4729 0.2168 -4.5063 15 6 2.5896 0.7052 -5.4521 16 6 3.0238 1.6039 -6.4091 17 6 4.3408 2.0203 -6.4204 18 6 5.2288 1.5359 -5.4691 19 8 6.5236 1.9436 -5.4773 20 6 6.9115 2.7290 -6.5022 21 1 6.1853 3.0730 -7.2238 22 6 8.2427 3.0952 -6.6297 23 7 9.1274 2.6760 -5.7509 24 14 8.7801 4.1839 -8.0494 25 1 8.6847 5.6092 -7.6438 26 1 10.1843 3.8657 -8.4133 27 1 7.8986 3.9422 -9.2197 28 6 4.7893 0.6336 -4.5087 29 1 -0.3632 -1.0277 0.0052 30 1 -0.3632 0.5183 0.8874 31 1 -0.3633 0.5092 -0.8925 32 1 2.6922 -1.8889 3.2750 33 1 2.4067 -3.4949 2.5630 34 1 4.0224 -2.7540 2.4682 35 1 3.9044 -2.5437 -0.3165 36 1 2.6568 -3.7285 0.1283 37 1 0.9408 -2.4996 -1.0319 38 1 2.3370 -2.5569 -2.1393 39 1 2.1876 -1.3688 -3.8827 40 1 3.8223 -1.4180 -3.1803 41 1 1.5595 0.3808 -5.4456 42 1 2.3328 1.9802 -7.1487 43 1 4.6795 2.7219 -7.1683 44 1 10.0587 2.9318 -5.8404 45 1 5.4776 0.2551 -3.7675 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188416587.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:46 Heat of formation + Delta-G solvation = -80.790998 kcal Electronic energy + Delta-G solvation = -28256.926061 eV Core-core repulsion = 24239.706356 eV Total energy + Delta-G solvation = -4017.219705 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.09321 -40.92915 -40.22683 -38.26342 -37.64319 -36.20331 -34.35814 -33.79883 -32.42917 -30.88212 -30.42726 -28.43746 -28.04905 -27.23097 -25.01057 -24.68252 -23.28214 -22.78022 -21.21783 -19.49912 -19.06063 -18.81138 -18.57279 -18.33307 -17.30640 -16.93755 -16.77421 -16.59299 -16.21853 -16.06030 -15.89110 -15.48934 -15.18314 -15.14346 -14.80819 -14.41217 -14.32513 -14.02306 -13.75416 -13.69075 -13.58280 -13.42099 -13.12730 -13.01866 -12.95189 -12.82098 -12.59566 -12.49697 -12.45020 -12.31500 -12.20616 -12.09705 -11.37351 -11.19202 -10.90457 -10.78547 -9.93056 -9.73795 -9.62084 -8.96097 -8.46921 -6.15363 0.52054 0.77855 1.33719 1.34155 1.43311 1.51583 1.56269 1.66997 1.97001 2.17687 2.83589 3.16292 3.26211 3.44827 3.60741 3.78148 3.91813 3.97844 4.04770 4.12423 4.19829 4.32687 4.34875 4.42502 4.44487 4.55630 4.60903 4.61760 4.64566 4.68367 4.74172 4.75750 4.90020 4.93998 5.07548 5.09943 5.13664 5.17994 5.32467 5.36428 5.66754 5.74325 5.76985 6.03395 6.16461 6.25243 6.32000 6.90353 6.97830 7.11328 7.79901 8.76690 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018252 B = 0.002530 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.700379 B =11065.136549 C =11744.980293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.129 3.871 3 H 0.091 0.909 4 C 0.511 3.489 5 O -0.588 6.588 6 N -0.602 5.602 7 C 0.065 3.935 8 C 0.088 3.912 9 C 0.083 3.917 10 N -0.614 5.614 11 C 0.521 3.479 12 O -0.575 6.575 13 C -0.086 4.086 14 C -0.027 4.027 15 C -0.177 4.177 16 C -0.075 4.075 17 C -0.248 4.248 18 C 0.110 3.890 19 O -0.236 6.236 20 C -0.413 4.413 21 H 0.100 0.900 22 C -0.024 4.024 23 N -0.922 5.922 24 Si 1.019 2.981 25 H -0.266 1.266 26 H -0.269 1.269 27 H -0.252 1.252 28 C -0.192 4.192 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.133 0.867 37 H 0.109 0.891 38 H 0.143 0.857 39 H 0.155 0.845 40 H 0.128 0.872 41 H 0.151 0.849 42 H 0.144 0.856 43 H 0.116 0.884 44 H 0.272 0.728 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.089 -18.435 8.151 27.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.022 3.978 3 H 0.109 0.891 4 C 0.298 3.702 5 O -0.468 6.468 6 N -0.333 5.333 7 C -0.077 4.077 8 C -0.034 4.034 9 C -0.038 4.038 10 N -0.350 5.350 11 C 0.311 3.689 12 O -0.452 6.452 13 C -0.125 4.125 14 C -0.028 4.028 15 C -0.195 4.195 16 C -0.093 4.093 17 C -0.267 4.267 18 C 0.060 3.940 19 O -0.143 6.143 20 C -0.489 4.489 21 H 0.117 0.883 22 C -0.221 4.221 23 N -0.561 5.561 24 Si 0.838 3.162 25 H -0.191 1.191 26 H -0.193 1.193 27 H -0.175 1.175 28 C -0.211 4.211 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.151 0.849 37 H 0.128 0.872 38 H 0.161 0.839 39 H 0.172 0.828 40 H 0.145 0.855 41 H 0.168 0.832 42 H 0.162 0.838 43 H 0.133 0.867 44 H 0.081 0.919 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -18.708 -17.567 8.879 27.155 hybrid contribution 1.015 1.176 -0.223 1.569 sum -17.693 -16.391 8.656 25.625 Atomic orbital electron populations 1.21910 0.90082 1.04251 1.03517 1.21154 0.97728 0.97151 0.81768 0.89146 1.20390 0.77441 0.81968 0.90365 1.90703 1.58935 1.65928 1.31279 1.47276 1.59482 1.16647 1.09894 1.21948 1.01637 0.98840 0.85306 1.22258 1.00530 0.98215 0.82410 1.22717 1.02804 0.76810 1.01439 1.48422 1.63204 1.08547 1.14843 1.21138 0.75933 0.87519 0.84322 1.90774 1.56034 1.16664 1.81771 1.20766 1.04852 0.96794 0.90040 1.19204 0.91138 0.96775 0.95674 1.20990 1.00051 1.01376 0.97104 1.21140 0.93766 0.95938 0.98452 1.21302 0.95595 1.06886 1.02907 1.19900 0.85085 0.93673 0.95311 1.83933 1.22802 1.61495 1.46068 1.21812 0.94636 1.27659 1.04838 0.88283 1.26597 0.94232 0.99558 1.01745 1.70188 1.03220 1.45501 1.37192 0.84588 0.78219 0.77169 0.76219 1.19090 1.19330 1.17507 1.20235 0.97510 1.02457 1.00931 0.89553 0.91099 0.90804 0.91631 0.88730 0.90940 0.90926 0.84884 0.87244 0.83946 0.82787 0.85452 0.83164 0.83790 0.86669 0.91883 0.87664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.38 71.99 0.67 -1.63 16 2 C 0.13 2.89 3.06 44.06 0.13 3.02 16 3 H 0.09 2.75 7.23 -2.39 -0.02 2.74 16 4 C 0.51 11.96 6.84 87.79 0.60 12.56 16 5 O -0.59 -18.52 15.97 -3.03 -0.05 -18.56 16 6 N -0.60 -9.27 3.20 -850.43 -2.72 -11.99 16 7 C 0.06 0.81 10.43 127.77 1.33 2.14 16 8 C 0.09 0.59 6.60 86.69 0.57 1.17 16 9 C 0.08 0.49 6.34 86.39 0.55 1.04 16 10 N -0.61 -10.90 2.62 -798.29 -2.09 -12.99 16 11 C 0.52 13.18 7.72 87.66 0.68 13.85 16 12 O -0.57 -21.93 15.59 -3.02 -0.05 -21.97 16 13 C -0.09 -1.68 4.20 29.10 0.12 -1.56 16 14 C -0.03 -0.90 4.37 -19.88 -0.09 -0.98 16 15 C -0.18 -5.48 9.70 22.30 0.22 -5.26 16 16 C -0.08 -2.67 10.04 22.25 0.22 -2.44 16 17 C -0.25 -11.34 9.17 22.39 0.21 -11.14 16 18 C 0.11 5.76 6.65 22.58 0.15 5.91 16 19 O -0.24 -14.83 9.76 -22.73 -0.22 -15.05 16 20 C -0.41 -25.00 9.49 67.92 0.64 -24.35 16 21 H 0.10 5.53 5.20 -2.91 -0.02 5.51 16 22 C -0.02 -1.42 5.49 84.83 0.47 -0.96 16 23 N -0.92 -58.17 13.67 21.61 0.30 -57.87 16 24 Si 1.02 44.14 29.55 68.60 2.03 46.17 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 27 H -0.25 -10.06 7.11 99.48 0.71 -9.36 16 28 C -0.19 -8.45 9.65 22.39 0.22 -8.24 16 29 H 0.09 0.96 7.49 -2.38 -0.02 0.94 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.21 6.59 -2.39 -0.02 1.19 16 33 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 36 H 0.13 -0.12 8.07 -2.39 -0.02 -0.14 16 37 H 0.11 0.18 7.49 -2.38 -0.02 0.16 16 38 H 0.14 0.00 6.03 -2.39 -0.01 -0.02 16 39 H 0.15 1.45 7.76 -2.39 -0.02 1.43 16 40 H 0.13 1.91 7.83 -2.39 -0.02 1.89 16 41 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 42 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 43 H 0.12 5.37 5.64 -2.91 -0.02 5.36 16 44 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 45 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -93.90 373.32 4.90 -89.00 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 1.01 Total: 20.14 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: 6.70 Total: -16.87 kcal Atomic # 7 Polarization: -78.34 SS G_CDS: -4.52 Total: -82.86 kcal Atomic # 8 Polarization: -55.27 SS G_CDS: -0.32 Total: -55.59 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -93.90 4.90 -89.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188416587.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.205 kcal (2) G-P(sol) polarization free energy of solvation -93.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds