Wall clock time and date at job start Tue Mar 31 2020 18:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47020 * 2 1 4 4 C 1.50693 * 109.47077 * 120.00048 * 2 1 3 5 5 H 1.07997 * 120.00419 * 120.00346 * 4 2 1 6 6 C 1.37884 * 119.99928 * 299.99642 * 4 2 1 7 7 N 1.31516 * 119.99928 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00115 * 180.02562 * 6 4 2 9 9 H 1.48510 * 109.47104 * 60.00051 * 8 6 4 10 10 H 1.48502 * 109.47241 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47551 * 300.00636 * 8 6 4 12 12 N 1.46505 * 109.47231 * 239.99756 * 2 1 3 13 13 C 1.34776 * 119.99703 * 84.99473 * 12 2 1 14 14 O 1.21362 * 120.00269 * 0.02562 * 13 12 2 15 15 C 1.49335 * 119.99998 * 180.02562 * 13 12 2 16 16 O 1.21392 * 119.99466 * 0.02562 * 15 13 12 17 17 N 1.34768 * 120.00226 * 180.02562 * 15 13 12 18 18 C 1.39874 * 120.00358 * 185.27530 * 17 15 13 19 19 C 1.38911 * 120.02352 * 213.34601 * 18 17 15 20 20 C 1.38053 * 119.98094 * 180.02562 * 19 18 17 21 21 C 1.38750 * 120.02144 * 0.02562 * 20 19 18 22 22 O 1.35955 * 119.98373 * 179.97438 * 21 20 19 23 23 C 1.42893 * 117.00032 * 179.97438 * 22 21 20 24 24 C 1.53002 * 109.47112 * 180.02562 * 23 22 21 25 25 C 1.53001 * 117.49787 * 243.74959 * 24 23 22 26 26 C 1.53000 * 117.49910 * 175.08962 * 24 23 22 27 27 C 1.38752 * 120.03791 * 0.23125 * 21 20 19 28 28 C 1.38061 * 120.02026 * 359.48871 * 27 21 20 29 29 H 1.08999 * 109.47561 * 299.99946 * 1 2 3 30 30 H 1.09002 * 109.47514 * 60.00362 * 1 2 3 31 31 H 1.09000 * 109.47020 * 179.97438 * 1 2 3 32 32 H 0.96995 * 119.99530 * 179.97438 * 7 6 4 33 33 H 0.97000 * 119.99858 * 265.00512 * 12 2 1 34 34 H 0.97001 * 120.00103 * 5.27813 * 17 15 13 35 35 H 1.08005 * 120.00988 * 0.02562 * 19 18 17 36 36 H 1.08001 * 119.99508 * 180.02562 * 20 19 18 37 37 H 1.08998 * 109.47495 * 300.00297 * 23 22 21 38 38 H 1.09002 * 109.47298 * 59.99846 * 23 22 21 39 39 H 1.08997 * 115.54866 * 29.41708 * 24 23 22 40 40 H 1.09002 * 117.49916 * 359.97438 * 25 24 23 41 41 H 1.08998 * 117.49961 * 145.02142 * 25 24 23 42 42 H 1.09004 * 117.49430 * 214.97749 * 26 24 23 43 43 H 1.08995 * 117.50191 * 359.97438 * 26 24 23 44 44 H 1.07995 * 119.98956 * 179.72326 * 27 21 20 45 45 H 1.07994 * 120.01124 * 180.23342 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3224 -1.1194 4.0079 9 1 3.8075 -1.1189 4.0077 10 1 1.8269 -0.4197 5.2205 11 1 1.8281 -2.5197 4.0083 12 7 2.0184 -0.6907 -1.1962 13 6 2.1470 -0.0183 -2.3572 14 8 1.8587 1.1593 -2.4116 15 6 2.6442 -0.7224 -3.5766 16 8 2.9321 -1.9005 -3.5222 17 7 2.7733 -0.0501 -4.7374 18 6 3.1328 -0.7321 -5.9045 19 6 3.9119 -0.1013 -6.8662 20 6 4.2657 -0.7751 -8.0180 21 6 3.8429 -2.0818 -8.2156 22 8 4.1914 -2.7444 -9.3504 23 6 3.7219 -4.0870 -9.4878 24 6 4.2113 -4.6649 -10.8172 25 6 3.1531 -5.0415 -11.8561 26 6 3.9093 -6.1377 -11.1012 27 6 3.0602 -2.7108 -7.2580 28 6 2.7102 -2.0405 -6.1029 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7082 1.1609 3.4843 33 1 2.2490 -1.6318 -1.1526 34 1 2.6170 0.9069 -4.7636 35 1 4.2408 0.9160 -6.7128 36 1 4.8718 -0.2850 -8.7656 37 1 4.1053 -4.6919 -8.6660 38 1 2.6321 -4.0948 -9.4669 39 1 5.1567 -4.2651 -11.1840 40 1 2.1082 -4.8780 -11.5922 41 1 3.4024 -4.8900 -12.9063 42 1 4.6560 -6.7067 -11.6552 43 1 3.3624 -6.6950 -10.3408 44 1 2.7278 -3.7263 -7.4146 45 1 2.1042 -2.5316 -5.3560 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190101618.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:38 Heat of formation + Delta-G solvation = -73.050596 kcal Electronic energy + Delta-G solvation = -26837.787900 eV Core-core repulsion = 22820.903844 eV Total energy + Delta-G solvation = -4016.884056 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.12052 -41.06065 -39.93894 -38.73438 -37.65567 -36.98476 -35.50829 -34.32215 -32.15780 -31.14144 -30.32373 -28.38560 -27.38043 -26.11221 -24.26916 -23.37632 -23.23639 -22.24328 -21.60974 -21.20812 -20.11969 -19.26774 -18.61013 -18.15765 -17.55498 -17.20079 -17.01690 -16.92143 -16.61808 -16.01267 -15.79176 -15.61327 -15.15576 -15.07842 -14.90751 -14.45309 -14.36334 -14.28839 -13.86534 -13.73660 -13.58727 -13.08144 -12.92152 -12.85458 -12.76540 -12.65086 -12.42003 -12.38074 -12.29879 -12.15290 -11.83622 -11.39084 -11.24124 -11.17720 -10.84356 -10.68299 -10.59213 -10.05777 -9.99456 -8.81925 -8.20371 -6.37714 -0.05006 0.29097 0.61101 1.31252 1.46611 1.47347 1.55717 2.09012 2.11794 2.39043 2.72352 2.74296 2.86645 3.10388 3.46214 3.69822 3.82238 3.87528 3.91113 4.03757 4.15835 4.21167 4.32745 4.43637 4.47022 4.55685 4.69262 4.76971 4.78622 4.87942 4.98762 5.00440 5.00880 5.19592 5.20133 5.22502 5.28120 5.29458 5.29779 5.43178 5.58656 5.68087 5.76951 6.01661 6.02990 6.38407 6.53894 6.64189 6.77932 7.05791 7.34374 8.85508 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023757 B = 0.001857 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.339862 B =15073.129016 C =15725.062523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.267 3.733 3 H 0.016 0.984 4 C -0.553 4.553 5 H 0.070 0.930 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.972 3.028 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.267 1.267 12 N -0.670 5.670 13 C 0.496 3.504 14 O -0.557 6.557 15 C 0.516 3.484 16 O -0.521 6.521 17 N -0.631 5.631 18 C 0.087 3.913 19 C -0.091 4.091 20 C -0.132 4.132 21 C 0.112 3.888 22 O -0.321 6.321 23 C 0.085 3.915 24 C -0.171 4.171 25 C -0.177 4.177 26 C -0.163 4.163 27 C -0.191 4.191 28 C -0.094 4.094 29 H 0.074 0.926 30 H 0.020 0.980 31 H 0.039 0.961 32 H 0.268 0.732 33 H 0.410 0.590 34 H 0.430 0.570 35 H 0.161 0.839 36 H 0.157 0.843 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.112 0.888 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.103 0.897 44 H 0.146 0.854 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.458 -9.500 -27.298 29.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.165 3.835 3 H 0.034 0.966 4 C -0.591 4.591 5 H 0.088 0.912 6 C -0.181 4.181 7 N -0.549 5.549 8 Si 0.796 3.204 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.192 1.192 12 N -0.319 5.319 13 C 0.276 3.724 14 O -0.437 6.437 15 C 0.298 3.702 16 O -0.397 6.397 17 N -0.278 5.278 18 C -0.006 4.006 19 C -0.111 4.111 20 C -0.151 4.151 21 C 0.066 3.934 22 O -0.235 6.235 23 C 0.010 3.990 24 C -0.189 4.189 25 C -0.213 4.213 26 C -0.199 4.199 27 C -0.210 4.210 28 C -0.114 4.114 29 H 0.092 0.908 30 H 0.039 0.961 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.246 0.754 34 H 0.270 0.730 35 H 0.179 0.821 36 H 0.175 0.825 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.130 0.870 40 H 0.117 0.883 41 H 0.123 0.877 42 H 0.128 0.872 43 H 0.122 0.878 44 H 0.163 0.837 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.441 -9.315 -27.243 29.302 hybrid contribution -0.044 -0.245 1.260 1.285 sum 5.398 -9.560 -25.983 28.207 Atomic orbital electron populations 1.21923 0.97395 0.99794 1.00334 1.18638 0.91757 0.92449 0.80696 0.96597 1.21450 1.33147 1.13816 0.90733 0.91194 1.25722 0.94737 0.95550 1.02044 1.70009 1.36468 1.23566 1.24898 0.85401 0.78625 0.78670 0.77671 1.19717 1.20818 1.19153 1.46261 1.61841 1.14824 1.09002 1.20128 0.80227 0.87013 0.85078 1.90712 1.51522 1.16274 1.85173 1.20194 0.78495 0.86875 0.84587 1.90737 1.47831 1.16039 1.85071 1.43026 1.65990 1.13373 1.05459 1.17878 1.01204 0.93894 0.87645 1.20992 0.95798 1.01708 0.92612 1.20483 1.03594 0.92065 0.98992 1.19151 0.95400 0.92661 0.86149 1.86031 1.72259 1.28209 1.36985 1.22485 0.98978 0.80031 0.97478 1.22099 1.01626 0.99321 0.95834 1.23208 0.97263 1.02958 0.97919 1.23111 1.03538 0.89998 1.03298 1.21236 1.03272 1.01853 0.94603 1.20983 0.99249 0.93978 0.97228 0.90769 0.96081 0.94163 0.92296 0.75427 0.73037 0.82102 0.82500 0.91112 0.91087 0.86977 0.88277 0.87692 0.87157 0.87844 0.83659 0.85855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.68 9.26 71.98 0.67 -6.01 16 2 C 0.27 13.61 2.56 44.24 0.11 13.73 16 3 H 0.02 0.94 7.58 -2.39 -0.02 0.92 16 4 C -0.55 -29.20 8.73 25.60 0.22 -28.98 16 5 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 6 C 0.02 1.08 5.30 84.66 0.45 1.53 16 7 N -0.91 -50.81 11.32 21.45 0.24 -50.57 16 8 Si 0.97 41.71 29.54 68.60 2.03 43.74 16 9 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 10 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 12 N -0.67 -28.84 5.06 -447.55 -2.27 -31.10 16 13 C 0.50 19.87 7.85 87.23 0.68 20.55 16 14 O -0.56 -24.68 16.15 -3.28 -0.05 -24.73 16 15 C 0.52 17.36 7.62 87.23 0.66 18.02 16 16 O -0.52 -18.77 14.16 -3.38 -0.05 -18.82 16 17 N -0.63 -16.95 5.33 -304.75 -1.62 -18.57 16 18 C 0.09 2.13 6.28 38.18 0.24 2.37 16 19 C -0.09 -1.73 9.96 22.39 0.22 -1.50 16 20 C -0.13 -2.40 9.98 22.35 0.22 -2.18 16 21 C 0.11 2.27 6.69 22.52 0.15 2.42 16 22 O -0.32 -6.05 10.14 -93.04 -0.94 -6.99 16 23 C 0.08 1.18 5.02 71.98 0.36 1.55 16 24 C -0.17 -1.98 6.05 -10.79 -0.07 -2.05 16 25 C -0.18 -1.63 10.18 30.62 0.31 -1.31 16 26 C -0.16 -1.35 10.25 30.62 0.31 -1.04 16 27 C -0.19 -4.03 9.03 22.35 0.20 -3.83 16 28 C -0.09 -2.40 8.65 22.39 0.19 -2.21 16 29 H 0.07 3.97 6.07 -2.39 -0.01 3.95 16 30 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 33 H 0.41 16.32 8.01 -92.71 -0.74 15.57 16 34 H 0.43 10.07 8.30 -92.71 -0.77 9.30 16 35 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 36 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 37 H 0.07 0.93 7.67 -2.39 -0.02 0.91 16 38 H 0.07 0.88 7.38 -2.39 -0.02 0.86 16 39 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.10 0.87 8.03 -2.39 -0.02 0.85 16 41 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.15 2.47 6.29 -2.91 -0.02 2.45 16 45 H 0.12 3.50 6.41 -2.91 -0.02 3.49 16 Total: -1.00 -64.38 383.18 1.82 -62.56 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: -0.47 Total: 33.43 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 4.96 Total: 11.06 kcal Atomic # 7 Polarization: -96.60 SS G_CDS: -3.65 Total: -100.25 kcal Atomic # 8 Polarization: -49.50 SS G_CDS: -1.04 Total: -50.54 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -64.38 1.82 -62.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190101618.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.487 kcal (2) G-P(sol) polarization free energy of solvation -64.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds