Wall clock time and date at job start Tue Mar 31 2020 18:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47295 * 2 1 4 4 C 1.50693 * 109.47084 * 239.99558 * 2 1 3 5 5 H 1.08004 * 120.00033 * 245.95144 * 4 2 1 6 6 C 1.37875 * 120.00247 * 65.95826 * 4 2 1 7 7 N 1.31516 * 120.00157 * 199.60245 * 6 4 2 8 8 Si 1.86799 * 119.99806 * 19.87648 * 6 4 2 9 9 H 1.48504 * 109.46940 * 179.72670 * 8 6 4 10 10 H 1.48496 * 109.47397 * 299.72820 * 8 6 4 11 11 H 1.48499 * 109.47032 * 59.73026 * 8 6 4 12 12 N 1.46499 * 109.46988 * 119.99253 * 2 1 3 13 13 C 1.46497 * 120.00010 * 60.00236 * 12 2 1 14 14 C 1.34779 * 119.99998 * 239.99874 * 12 2 1 15 15 O 1.21359 * 120.00256 * 5.77913 * 14 12 2 16 16 C 1.49338 * 119.99773 * 185.78327 * 14 12 2 17 17 O 1.21382 * 120.00191 * 5.34506 * 16 14 12 18 18 N 1.34778 * 119.99705 * 185.35253 * 16 14 12 19 19 C 1.39873 * 119.99971 * 185.05653 * 18 16 14 20 20 C 1.38942 * 120.08299 * 322.01096 * 19 18 16 21 21 C 1.37871 * 119.87330 * 179.84713 * 20 19 18 22 22 C 1.39184 * 120.31927 * 0.48466 * 21 20 19 23 23 C 1.38404 * 119.82201 * 359.59918 * 22 21 20 24 24 C 1.38436 * 119.89473 * 0.26007 * 23 22 21 25 25 C 1.50773 * 121.40688 * 180.54225 * 23 22 21 26 26 C 1.53067 * 109.69700 * 342.11189 * 25 23 22 27 27 C 1.53405 * 108.30333 * 48.20454 * 26 25 23 28 28 O 1.35930 * 118.41250 * 179.50155 * 22 21 20 29 29 H 1.08996 * 109.47200 * 54.45004 * 1 2 3 30 30 H 1.08997 * 109.47298 * 174.45032 * 1 2 3 31 31 H 1.09007 * 109.47226 * 294.45139 * 1 2 3 32 32 H 0.96996 * 119.99848 * 355.23724 * 7 6 4 33 33 H 1.09000 * 109.47235 * 95.22327 * 13 12 2 34 34 H 1.08996 * 109.47452 * 215.22455 * 13 12 2 35 35 H 1.08998 * 109.47120 * 335.22502 * 13 12 2 36 36 H 0.97001 * 120.00163 * 5.05319 * 18 16 14 37 37 H 1.08003 * 120.06362 * 0.08624 * 20 19 18 38 38 H 1.08000 * 119.84064 * 180.25084 * 21 20 19 39 39 H 1.08002 * 119.86729 * 179.81060 * 24 23 22 40 40 H 1.09001 * 109.43728 * 102.18339 * 25 23 22 41 41 H 1.09003 * 109.43996 * 222.04779 * 25 23 22 42 42 H 1.09000 * 109.70372 * 288.50237 * 26 25 23 43 43 H 1.09003 * 109.72766 * 167.92595 * 26 25 23 44 44 H 1.09001 * 109.68606 * 175.55239 * 27 26 25 45 45 H 1.09005 * 109.71944 * 55.01098 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7105 -1.2303 5 1 2.5716 -1.6412 -1.1341 6 6 1.8034 -0.1723 -2.4789 7 7 1.8811 -0.9345 -3.5479 8 14 1.3906 1.6412 -2.6529 9 1 1.1981 1.9695 -4.0884 10 1 0.1426 1.9388 -1.9054 11 1 2.5032 2.4570 -2.1036 12 7 2.0182 -0.6905 1.1963 13 6 1.6644 -2.0930 1.4282 14 6 2.7931 -0.0353 2.0834 15 8 3.0002 1.1527 1.9471 16 6 3.3969 -0.7714 3.2339 17 8 3.2708 -1.9758 3.3174 18 7 4.0817 -0.0984 4.1797 19 6 4.7365 -0.7970 5.1994 20 6 4.1522 -1.9287 5.7546 21 6 4.8029 -2.6158 6.7573 22 6 6.0383 -2.1757 7.2233 23 6 6.6199 -1.0474 6.6717 24 6 5.9685 -0.3585 5.6629 25 6 7.9621 -0.5461 7.1409 26 6 8.2914 -1.1541 8.5064 27 6 8.0366 -2.6652 8.4350 28 8 6.6406 -2.8766 8.2201 29 1 -0.3633 0.5975 -0.8361 30 1 -0.3634 -1.0228 -0.0994 31 1 -0.3634 0.4254 0.9355 32 1 2.1665 -1.8579 -3.4654 33 1 2.4613 -2.7355 1.0538 34 1 1.5328 -2.2626 2.4969 35 1 0.7357 -2.3245 0.9066 36 1 4.1205 0.8705 4.1533 37 1 3.1919 -2.2717 5.3988 38 1 4.3501 -3.4978 7.1857 39 1 6.4213 0.5236 5.2348 40 1 8.7286 -0.8340 6.4213 41 1 7.9345 0.5404 7.2249 42 1 7.6532 -0.7097 9.2702 43 1 9.3379 -0.9690 8.7490 44 1 8.3389 -3.1332 9.3719 45 1 8.6044 -3.0953 7.6099 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190149451.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:03 Heat of formation + Delta-G solvation = -69.932689 kcal Electronic energy + Delta-G solvation = -28201.858507 eV Core-core repulsion = 24185.109653 eV Total energy + Delta-G solvation = -4016.748854 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.16732 -40.43766 -38.70034 -37.38964 -35.93805 -34.68075 -34.33915 -32.76656 -30.76505 -30.28863 -29.61148 -26.48585 -26.02946 -25.12796 -24.61244 -23.57132 -22.70150 -21.19642 -19.90983 -19.25400 -18.03756 -17.69542 -17.49986 -17.18829 -16.55782 -16.15737 -15.67243 -15.52354 -15.09959 -14.75469 -14.49515 -14.19300 -13.98585 -13.83052 -13.53459 -13.41098 -13.26784 -13.16267 -12.84228 -12.58978 -12.40829 -12.04895 -11.80033 -11.73526 -11.71045 -11.43174 -11.35059 -11.27273 -10.89877 -10.81471 -10.55673 -10.00732 -9.89880 -9.84968 -9.18712 -9.09246 -8.90981 -8.37918 -7.97010 -7.87232 -6.56786 -4.20066 1.03709 1.11992 1.81415 2.58836 3.05119 3.33201 3.43796 3.44030 3.57054 3.64497 3.90260 4.26850 4.32493 4.40379 4.40391 4.57126 4.64693 4.82545 4.96855 5.06664 5.15317 5.16749 5.19927 5.26453 5.43503 5.50445 5.62652 5.75667 5.80975 5.84033 6.07493 6.13267 6.16678 6.24866 6.27601 6.35161 6.44726 6.51307 6.67062 6.84368 6.92336 7.14460 7.22086 7.24776 7.67738 7.85974 8.10512 8.27186 8.43011 8.81079 9.48139 10.81735 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026804 B = 0.002395 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.379676 B =11685.946205 C =12012.224879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.232 3.768 3 H 0.057 0.943 4 C -0.616 4.616 5 H 0.063 0.937 6 C 0.039 3.961 7 N -0.895 5.895 8 Si 1.039 2.961 9 H -0.282 1.282 10 H -0.273 1.273 11 H -0.278 1.278 12 N -0.547 5.547 13 C 0.088 3.912 14 C 0.495 3.505 15 O -0.539 6.539 16 C 0.509 3.491 17 O -0.499 6.499 18 N -0.651 5.651 19 C 0.118 3.882 20 C -0.083 4.083 21 C -0.129 4.129 22 C 0.116 3.884 23 C -0.144 4.144 24 C -0.105 4.105 25 C -0.077 4.077 26 C -0.159 4.159 27 C 0.060 3.940 28 O -0.317 6.317 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.029 0.971 32 H 0.269 0.731 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.421 0.579 37 H 0.144 0.856 38 H 0.134 0.866 39 H 0.130 0.870 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.106 0.894 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.535 -0.595 24.486 26.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.131 3.869 3 H 0.075 0.925 4 C -0.654 4.654 5 H 0.081 0.919 6 C -0.168 4.168 7 N -0.528 5.528 8 Si 0.867 3.133 9 H -0.208 1.208 10 H -0.199 1.199 11 H -0.204 1.204 12 N -0.277 5.277 13 C -0.055 4.055 14 C 0.276 3.724 15 O -0.418 6.418 16 C 0.292 3.708 17 O -0.373 6.373 18 N -0.298 5.298 19 C 0.024 3.976 20 C -0.103 4.103 21 C -0.149 4.149 22 C 0.071 3.929 23 C -0.145 4.145 24 C -0.126 4.126 25 C -0.114 4.114 26 C -0.197 4.197 27 C -0.015 4.015 28 O -0.231 6.231 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.259 0.741 37 H 0.162 0.838 38 H 0.152 0.848 39 H 0.148 0.852 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.103 0.897 44 H 0.124 0.876 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.002 0.165 23.363 25.038 hybrid contribution 0.786 -0.751 0.890 1.405 sum 9.788 -0.586 24.253 26.161 Atomic orbital electron populations 1.22494 0.98025 1.01553 0.99824 1.19404 0.90978 0.94658 0.81814 0.92548 1.22120 1.42086 1.10480 0.90754 0.91882 1.25687 0.94032 1.05313 0.91761 1.70873 1.41350 1.08967 1.31598 0.84112 0.77514 0.75312 0.76347 1.20803 1.19932 1.20429 1.47985 1.45464 1.12798 1.21433 1.21909 1.01122 0.81122 1.01383 1.19649 0.81727 0.87208 0.83799 1.90707 1.61224 1.14471 1.75400 1.20769 0.79187 0.87681 0.83159 1.90715 1.56348 1.14142 1.76086 1.43171 1.50640 1.11334 1.24675 1.17579 0.92622 0.95918 0.91494 1.21061 1.00532 0.94609 0.94119 1.20485 0.94473 1.01603 0.98300 1.18676 0.93465 0.90992 0.89761 1.19532 0.98542 0.96429 1.00024 1.20684 0.92733 1.01315 0.97827 1.20465 0.93486 1.01085 0.96408 1.22231 1.03140 0.96184 0.98145 1.22954 0.79929 0.96130 1.02501 1.86012 1.24075 1.63203 1.49793 0.91511 0.92843 0.95228 0.92039 0.92518 0.90699 0.91111 0.74117 0.83810 0.84780 0.85182 0.90301 0.89868 0.90378 0.89737 0.87606 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 8.76 37.15 0.33 -3.11 16 2 C 0.23 5.58 2.21 -69.09 -0.15 5.43 16 3 H 0.06 1.44 5.51 -51.93 -0.29 1.15 16 4 C -0.62 -16.91 8.65 -34.44 -0.30 -17.21 16 5 H 0.06 1.87 7.79 -52.48 -0.41 1.46 16 6 C 0.04 1.09 5.33 -17.82 -0.09 1.00 16 7 N -0.89 -26.72 13.70 55.43 0.76 -25.96 16 8 Si 1.04 24.77 26.49 -169.99 -4.50 20.27 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.27 -5.94 5.64 56.52 0.32 -5.62 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.55 -11.71 2.75 -175.82 -0.48 -12.19 16 13 C 0.09 1.64 8.37 59.85 0.50 2.14 16 14 C 0.50 10.00 7.72 -11.64 -0.09 9.91 16 15 O -0.54 -11.76 15.84 5.49 0.09 -11.68 16 16 C 0.51 8.66 7.54 -11.64 -0.09 8.58 16 17 O -0.50 -8.87 10.99 5.47 0.06 -8.81 16 18 N -0.65 -9.04 5.31 -10.30 -0.05 -9.10 16 19 C 0.12 1.53 6.24 -83.74 -0.52 1.00 16 20 C -0.08 -1.08 8.68 -39.45 -0.34 -1.43 16 21 C -0.13 -1.53 9.93 -39.36 -0.39 -1.92 16 22 C 0.12 1.33 6.47 -39.17 -0.25 1.07 16 23 C -0.14 -1.49 5.75 -104.45 -0.60 -2.09 16 24 C -0.11 -1.16 9.59 -39.32 -0.38 -1.54 16 25 C -0.08 -0.56 5.85 -27.81 -0.16 -0.73 16 26 C -0.16 -0.94 6.19 -26.49 -0.16 -1.11 16 27 C 0.06 0.41 7.03 37.37 0.26 0.67 16 28 O -0.32 -3.31 10.27 -19.52 -0.20 -3.51 16 29 H 0.07 1.45 5.08 -51.93 -0.26 1.18 16 30 H 0.05 1.10 6.89 -51.93 -0.36 0.74 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.27 8.02 8.73 -40.82 -0.36 7.66 16 33 H 0.06 1.11 8.10 -51.93 -0.42 0.69 16 34 H 0.07 1.26 5.96 -51.93 -0.31 0.95 16 35 H 0.07 1.29 6.55 -51.93 -0.34 0.95 16 36 H 0.42 5.16 8.33 -40.82 -0.34 4.82 16 37 H 0.14 1.95 6.44 -52.48 -0.34 1.62 16 38 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 39 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 361.99 15.07 5.46 5.46 Total: -1.00 -32.18 361.99 -7.43 -39.61 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.10 Total: 5.24 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -2.45 Total: 0.67 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.22 Total: -47.25 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.05 Total: -23.99 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -4.50 Total: 20.27 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.18 -7.43 -39.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190149451.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.324 kcal (2) G-P(sol) polarization free energy of solvation -32.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds