Wall clock time and date at job start Tue Mar 31 2020 18:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47295 * 2 1 4 4 C 1.50693 * 109.47084 * 239.99558 * 2 1 3 5 5 H 1.08004 * 120.00033 * 245.95144 * 4 2 1 6 6 C 1.37875 * 120.00247 * 65.95826 * 4 2 1 7 7 N 1.31516 * 120.00157 * 199.60245 * 6 4 2 8 8 Si 1.86799 * 119.99806 * 19.87648 * 6 4 2 9 9 H 1.48504 * 109.46940 * 179.72670 * 8 6 4 10 10 H 1.48496 * 109.47397 * 299.72820 * 8 6 4 11 11 H 1.48499 * 109.47032 * 59.73026 * 8 6 4 12 12 N 1.46499 * 109.46988 * 119.99253 * 2 1 3 13 13 C 1.46497 * 120.00010 * 60.00236 * 12 2 1 14 14 C 1.34779 * 119.99998 * 239.99874 * 12 2 1 15 15 O 1.21359 * 120.00256 * 5.77913 * 14 12 2 16 16 C 1.49338 * 119.99773 * 185.78327 * 14 12 2 17 17 O 1.21382 * 120.00191 * 5.34506 * 16 14 12 18 18 N 1.34778 * 119.99705 * 185.35253 * 16 14 12 19 19 C 1.39873 * 119.99971 * 185.05653 * 18 16 14 20 20 C 1.38942 * 120.08299 * 322.01096 * 19 18 16 21 21 C 1.37871 * 119.87330 * 179.84713 * 20 19 18 22 22 C 1.39184 * 120.31927 * 0.48466 * 21 20 19 23 23 C 1.38404 * 119.82201 * 359.59918 * 22 21 20 24 24 C 1.38436 * 119.89473 * 0.26007 * 23 22 21 25 25 C 1.50773 * 121.40688 * 180.54225 * 23 22 21 26 26 C 1.53067 * 109.69700 * 342.11189 * 25 23 22 27 27 C 1.53405 * 108.30333 * 48.20454 * 26 25 23 28 28 O 1.35930 * 118.41250 * 179.50155 * 22 21 20 29 29 H 1.08996 * 109.47200 * 54.45004 * 1 2 3 30 30 H 1.08997 * 109.47298 * 174.45032 * 1 2 3 31 31 H 1.09007 * 109.47226 * 294.45139 * 1 2 3 32 32 H 0.96996 * 119.99848 * 355.23724 * 7 6 4 33 33 H 1.09000 * 109.47235 * 95.22327 * 13 12 2 34 34 H 1.08996 * 109.47452 * 215.22455 * 13 12 2 35 35 H 1.08998 * 109.47120 * 335.22502 * 13 12 2 36 36 H 0.97001 * 120.00163 * 5.05319 * 18 16 14 37 37 H 1.08003 * 120.06362 * 0.08624 * 20 19 18 38 38 H 1.08000 * 119.84064 * 180.25084 * 21 20 19 39 39 H 1.08002 * 119.86729 * 179.81060 * 24 23 22 40 40 H 1.09001 * 109.43728 * 102.18339 * 25 23 22 41 41 H 1.09003 * 109.43996 * 222.04779 * 25 23 22 42 42 H 1.09000 * 109.70372 * 288.50237 * 26 25 23 43 43 H 1.09003 * 109.72766 * 167.92595 * 26 25 23 44 44 H 1.09001 * 109.68606 * 175.55239 * 27 26 25 45 45 H 1.09005 * 109.71944 * 55.01098 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7105 -1.2303 5 1 2.5716 -1.6412 -1.1341 6 6 1.8034 -0.1723 -2.4789 7 7 1.8811 -0.9345 -3.5479 8 14 1.3906 1.6412 -2.6529 9 1 1.1981 1.9695 -4.0884 10 1 0.1426 1.9388 -1.9054 11 1 2.5032 2.4570 -2.1036 12 7 2.0182 -0.6905 1.1963 13 6 1.6644 -2.0930 1.4282 14 6 2.7931 -0.0353 2.0834 15 8 3.0002 1.1527 1.9471 16 6 3.3969 -0.7714 3.2339 17 8 3.2708 -1.9758 3.3174 18 7 4.0817 -0.0984 4.1797 19 6 4.7365 -0.7970 5.1994 20 6 4.1522 -1.9287 5.7546 21 6 4.8029 -2.6158 6.7573 22 6 6.0383 -2.1757 7.2233 23 6 6.6199 -1.0474 6.6717 24 6 5.9685 -0.3585 5.6629 25 6 7.9621 -0.5461 7.1409 26 6 8.2914 -1.1541 8.5064 27 6 8.0366 -2.6652 8.4350 28 8 6.6406 -2.8766 8.2201 29 1 -0.3633 0.5975 -0.8361 30 1 -0.3634 -1.0228 -0.0994 31 1 -0.3634 0.4254 0.9355 32 1 2.1665 -1.8579 -3.4654 33 1 2.4613 -2.7355 1.0538 34 1 1.5328 -2.2626 2.4969 35 1 0.7357 -2.3245 0.9066 36 1 4.1205 0.8705 4.1533 37 1 3.1919 -2.2717 5.3988 38 1 4.3501 -3.4978 7.1857 39 1 6.4213 0.5236 5.2348 40 1 8.7286 -0.8340 6.4213 41 1 7.9345 0.5404 7.2249 42 1 7.6532 -0.7097 9.2702 43 1 9.3379 -0.9690 8.7490 44 1 8.3389 -3.1332 9.3719 45 1 8.6044 -3.0953 7.6099 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190149451.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:02 Heat of formation + Delta-G solvation = -91.143771 kcal Electronic energy + Delta-G solvation = -28202.778288 eV Core-core repulsion = 24185.109653 eV Total energy + Delta-G solvation = -4017.668635 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.29783 -41.49452 -40.06928 -38.48457 -37.59854 -35.70985 -35.18404 -34.75518 -32.15432 -31.50732 -30.57107 -28.01627 -27.03220 -26.71768 -26.04103 -24.51142 -23.63326 -22.58074 -20.92997 -20.71223 -19.62577 -19.03566 -18.80109 -18.35027 -17.76199 -17.40832 -17.06688 -16.57551 -16.27190 -15.76695 -15.59355 -15.40383 -15.15018 -15.02167 -14.75272 -14.69874 -14.37244 -14.27846 -14.18918 -14.02100 -13.84423 -13.47803 -13.29801 -13.23131 -13.12708 -12.51164 -12.49604 -12.37743 -12.08063 -11.86830 -11.85654 -11.68469 -11.49250 -11.21301 -10.88706 -10.54021 -10.46564 -9.84265 -9.73873 -8.85530 -8.77308 -6.44217 -0.05988 0.24705 0.52408 1.23322 1.44039 1.53458 1.71298 2.02414 2.34072 2.42273 2.49348 2.67132 2.99686 3.21671 3.63551 3.71143 3.81708 3.95488 4.15168 4.20979 4.28034 4.37559 4.43815 4.45756 4.52933 4.59737 4.65643 4.68764 4.71319 4.75301 4.86313 4.91030 4.95670 5.04580 5.06521 5.17432 5.19522 5.27557 5.30216 5.36257 5.48013 5.69695 5.72465 5.94245 5.98968 6.33801 6.44711 6.47821 6.65393 6.87569 7.32236 8.56938 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026804 B = 0.002395 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.379676 B =11685.946205 C =12012.224879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.232 3.768 3 H 0.046 0.954 4 C -0.615 4.615 5 H 0.027 0.973 6 C -0.007 4.007 7 N -0.924 5.924 8 Si 1.074 2.926 9 H -0.282 1.282 10 H -0.236 1.236 11 H -0.274 1.274 12 N -0.560 5.560 13 C 0.095 3.905 14 C 0.492 3.508 15 O -0.556 6.556 16 C 0.515 3.485 17 O -0.511 6.511 18 N -0.632 5.632 19 C 0.093 3.907 20 C -0.094 4.094 21 C -0.140 4.140 22 C 0.113 3.887 23 C -0.145 4.145 24 C -0.100 4.100 25 C -0.080 4.080 26 C -0.154 4.154 27 C 0.049 3.951 28 O -0.331 6.331 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.255 0.745 33 H 0.040 0.960 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.429 0.571 37 H 0.133 0.867 38 H 0.143 0.857 39 H 0.151 0.849 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.074 0.926 43 H 0.112 0.888 44 H 0.130 0.870 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.469 0.756 26.974 28.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.130 3.870 3 H 0.063 0.937 4 C -0.653 4.653 5 H 0.045 0.955 6 C -0.207 4.207 7 N -0.559 5.559 8 Si 0.895 3.105 9 H -0.208 1.208 10 H -0.160 1.160 11 H -0.200 1.200 12 N -0.290 5.290 13 C -0.047 4.047 14 C 0.274 3.726 15 O -0.437 6.437 16 C 0.297 3.703 17 O -0.386 6.386 18 N -0.280 5.280 19 C 0.000 4.000 20 C -0.114 4.114 21 C -0.159 4.159 22 C 0.068 3.932 23 C -0.146 4.146 24 C -0.120 4.120 25 C -0.117 4.117 26 C -0.192 4.192 27 C -0.026 4.026 28 O -0.245 6.245 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.268 0.732 37 H 0.151 0.849 38 H 0.160 0.840 39 H 0.168 0.832 40 H 0.106 0.894 41 H 0.116 0.884 42 H 0.092 0.908 43 H 0.130 0.870 44 H 0.147 0.853 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.953 1.505 25.913 27.800 hybrid contribution 0.673 -1.265 0.274 1.459 sum 10.626 0.241 26.187 28.262 Atomic orbital electron populations 1.22348 0.95624 1.02007 1.01137 1.19209 0.92720 0.93624 0.81473 0.93663 1.22244 1.41175 1.09176 0.92708 0.95457 1.26986 0.93657 1.08535 0.91549 1.70993 1.43774 1.08529 1.32615 0.83694 0.79170 0.70757 0.76851 1.20814 1.16003 1.19993 1.47995 1.46181 1.13660 1.21174 1.21929 1.00513 0.79614 1.02692 1.20163 0.80917 0.87142 0.84348 1.90680 1.61531 1.15351 1.76101 1.20108 0.79876 0.87297 0.82990 1.90713 1.57277 1.14333 1.76306 1.42978 1.49492 1.11658 1.23839 1.17746 0.93739 0.96579 0.91941 1.21016 1.00456 0.95063 0.94901 1.20618 0.95050 1.01969 0.98310 1.18841 0.93364 0.91277 0.89766 1.19922 0.99754 0.95737 0.99233 1.20923 0.91849 1.01733 0.97533 1.20602 0.91691 1.02043 0.97350 1.22233 1.04740 0.95052 0.97126 1.23309 0.78027 0.97350 1.03865 1.85998 1.26111 1.63221 1.49199 0.91665 0.92625 0.92611 0.93574 0.94116 0.88541 0.90832 0.73187 0.84941 0.83954 0.83171 0.89354 0.88381 0.90774 0.86998 0.85261 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.27 8.76 71.98 0.63 -5.64 16 2 C 0.23 11.03 2.21 44.24 0.10 11.13 16 3 H 0.05 2.27 5.51 -2.38 -0.01 2.26 16 4 C -0.62 -34.42 8.65 25.60 0.22 -34.20 16 5 H 0.03 1.68 7.79 -2.91 -0.02 1.66 16 6 C -0.01 -0.39 5.33 84.65 0.45 0.06 16 7 N -0.92 -56.58 13.70 21.45 0.29 -56.29 16 8 Si 1.07 49.29 26.49 68.60 1.82 51.10 16 9 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 10 H -0.24 -9.39 5.64 99.48 0.56 -8.83 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 12 N -0.56 -23.92 2.75 -828.54 -2.28 -26.20 16 13 C 0.09 3.56 8.37 127.77 1.07 4.63 16 14 C 0.49 19.70 7.72 87.23 0.67 20.38 16 15 O -0.56 -23.94 15.84 -3.28 -0.05 -24.00 16 16 C 0.51 17.34 7.54 87.23 0.66 18.00 16 17 O -0.51 -18.13 10.99 -3.34 -0.04 -18.16 16 18 N -0.63 -17.03 5.31 -304.86 -1.62 -18.65 16 19 C 0.09 2.33 6.24 38.15 0.24 2.57 16 20 C -0.09 -2.44 8.68 22.35 0.19 -2.25 16 21 C -0.14 -3.26 9.93 22.41 0.22 -3.04 16 22 C 0.11 2.43 6.47 22.54 0.15 2.57 16 23 C -0.14 -2.71 5.75 -19.75 -0.11 -2.82 16 24 C -0.10 -2.03 9.59 22.44 0.22 -1.82 16 25 C -0.08 -0.91 5.85 29.89 0.18 -0.74 16 26 C -0.15 -1.31 6.19 30.75 0.19 -1.12 16 27 C 0.05 0.53 7.03 72.12 0.51 1.04 16 28 O -0.33 -6.35 10.27 -92.76 -0.95 -7.31 16 29 H 0.06 2.67 5.08 -2.39 -0.01 2.66 16 30 H 0.05 2.22 6.89 -2.39 -0.02 2.21 16 31 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 32 H 0.25 15.84 8.73 -92.71 -0.81 15.03 16 33 H 0.04 1.64 8.10 -2.39 -0.02 1.62 16 34 H 0.10 3.20 5.96 -2.39 -0.01 3.18 16 35 H 0.07 2.68 6.55 -2.39 -0.02 2.66 16 36 H 0.43 10.02 8.33 -92.71 -0.77 9.25 16 37 H 0.13 3.66 6.44 -2.91 -0.02 3.64 16 38 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 39 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 40 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.13 0.78 8.14 -2.39 -0.02 0.77 16 45 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 Total: -1.00 -70.67 361.99 2.82 -67.85 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.08 Total: 22.89 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 5.58 Total: 8.76 kcal Atomic # 7 Polarization: -97.53 SS G_CDS: -3.61 Total: -101.14 kcal Atomic # 8 Polarization: -48.42 SS G_CDS: -1.04 Total: -49.47 kcal Atomic # 14 Polarization: 49.29 SS G_CDS: 1.82 Total: 51.10 kcal Total: -70.67 2.82 -67.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190149451.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.298 kcal (2) G-P(sol) polarization free energy of solvation -70.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds