Wall clock time and date at job start Tue Mar 31 2020 18:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46916 * 2 1 4 4 C 1.52995 * 109.47295 * 239.99616 * 2 1 3 5 5 C 1.50699 * 109.47114 * 175.00153 * 4 2 1 6 6 O 1.21284 * 120.00076 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99991 * 179.97438 * 5 4 2 8 8 C 1.47066 * 136.05803 * 359.63325 * 7 5 4 9 9 C 1.53234 * 88.08395 * 207.19624 * 8 7 5 10 10 O 1.42903 * 114.01435 * 87.71523 * 9 8 7 11 11 C 1.50693 * 114.51169 * 220.45603 * 9 8 7 12 12 H 1.08003 * 120.00438 * 93.84443 * 11 9 8 13 13 C 1.37883 * 120.00311 * 273.85003 * 11 9 8 14 14 N 1.31519 * 119.99705 * 359.97438 * 13 11 9 15 15 Si 1.86793 * 120.00362 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47134 * 60.00056 * 15 13 11 17 17 H 1.48506 * 109.46943 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46985 * 299.99622 * 15 13 11 19 19 C 1.47066 * 136.05684 * 179.97438 * 7 5 4 20 20 N 1.46505 * 109.46864 * 119.99788 * 2 1 3 21 21 C 1.34777 * 119.99724 * 275.00347 * 20 2 1 22 22 O 1.21553 * 120.00290 * 359.97438 * 21 20 2 23 23 C 1.47849 * 119.99699 * 179.72334 * 21 20 2 24 24 C 1.39579 * 120.14302 * 0.02562 * 23 21 20 25 25 C 1.37962 * 119.84859 * 179.76097 * 24 23 21 26 26 C 1.38358 * 120.14590 * 0.48938 * 25 24 23 27 27 C 1.38360 * 120.29323 * 359.76580 * 26 25 24 28 28 C 1.37964 * 120.14355 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.46916 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47246 * 300.00614 * 1 2 3 31 31 H 1.08998 * 109.46377 * 60.00617 * 1 2 3 32 32 H 1.09003 * 109.47445 * 295.00334 * 4 2 1 33 33 H 1.09002 * 109.47282 * 55.00376 * 4 2 1 34 34 H 1.08999 * 113.47038 * 321.93685 * 8 7 5 35 35 H 1.09009 * 113.46810 * 92.37297 * 8 7 5 36 36 H 0.96701 * 114.00046 * 86.39011 * 10 9 8 37 37 H 0.96998 * 120.00286 * 180.02562 * 14 13 11 38 38 H 1.09004 * 113.46777 * 267.62399 * 19 7 5 39 39 H 1.08995 * 113.46906 * 38.06595 * 19 7 5 40 40 H 0.97000 * 119.99792 * 94.99915 * 20 2 1 41 41 H 1.07997 * 120.07564 * 359.97438 * 24 23 21 42 42 H 1.07997 * 119.92162 * 180.24693 * 25 24 23 43 43 H 1.07997 * 119.85058 * 179.74142 * 26 25 24 44 44 H 1.07999 * 119.92745 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.06931 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5420 -0.6150 -1.3126 6 8 4.1451 -0.0212 -0.4439 7 7 4.2151 -1.1806 -2.3340 8 6 3.8643 -1.9611 -3.5302 9 6 5.2553 -2.5998 -3.4584 10 8 5.3192 -3.7628 -2.6305 11 6 5.9295 -2.7815 -4.7938 12 1 6.6055 -2.0254 -5.1649 13 6 5.6832 -3.9132 -5.5421 14 7 4.8603 -4.8342 -5.0901 15 14 6.5183 -4.1382 -7.1978 16 1 7.9916 -4.1444 -7.0123 17 1 6.0899 -5.4277 -7.7970 18 1 6.1376 -3.0218 -8.1000 19 6 5.6241 -1.2942 -2.7399 20 7 2.0184 -0.6906 1.1963 21 6 2.1470 -0.0182 2.3572 22 8 1.8583 1.1613 2.4116 23 6 2.6339 -0.7166 3.5659 24 6 2.9618 -2.0721 3.5079 25 6 3.4203 -2.7166 4.6383 26 6 3.5458 -2.0248 5.8299 27 6 3.2174 -0.6823 5.8955 28 6 2.7628 -0.0246 4.7711 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8898 31 1 -0.3632 0.5138 -0.8901 32 1 1.7517 -1.7716 -1.2055 33 1 1.6056 -0.2618 -2.1369 34 1 3.0534 -2.6702 -3.3635 35 1 3.7132 -1.3486 -4.4192 36 1 5.0864 -4.5833 -3.0862 37 1 4.6873 -5.6305 -5.6163 38 1 5.9461 -0.5026 -3.4164 39 1 6.3068 -1.4374 -1.9024 40 1 2.2490 -1.6318 1.1527 41 1 2.8601 -2.6143 2.5795 42 1 3.6781 -3.7644 4.5938 43 1 3.9012 -2.5350 6.7129 44 1 3.3172 -0.1481 6.8288 45 1 2.5065 1.0232 4.8237 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193967157.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:36 Heat of formation + Delta-G solvation = -59.163984 kcal Electronic energy + Delta-G solvation = -28227.762686 eV Core-core repulsion = 24211.480798 eV Total energy + Delta-G solvation = -4016.281887 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.32970 -39.60950 -38.46273 -37.51317 -35.48640 -34.04661 -32.37347 -32.24479 -31.08434 -30.52311 -29.25480 -27.43663 -25.24622 -25.09608 -24.17824 -22.71300 -21.50650 -20.38425 -20.13144 -18.44357 -17.98360 -17.47779 -16.58334 -16.29439 -16.08020 -15.44792 -15.19249 -15.05831 -14.90134 -14.63182 -14.47375 -14.18816 -13.78730 -13.57508 -13.35631 -13.14744 -12.94998 -12.76822 -12.46057 -12.30481 -12.15216 -11.82669 -11.79261 -11.68330 -11.60902 -11.26940 -11.09412 -11.05316 -10.96734 -10.54300 -10.31710 -9.84226 -9.67191 -9.25035 -9.17540 -9.14081 -8.90958 -8.81845 -8.45245 -7.88908 -6.46023 -4.56242 0.75794 1.20546 2.90512 3.12150 3.12804 3.18326 3.20552 3.23826 3.49355 3.81601 4.13487 4.59041 4.65220 4.74669 4.76658 4.79765 4.86832 4.97314 5.19409 5.22319 5.32463 5.37710 5.47791 5.55670 5.62944 5.63452 5.66469 5.80664 5.88565 6.00744 6.12859 6.16744 6.18914 6.25011 6.26473 6.35486 6.45420 6.55467 6.58265 6.63270 6.71933 7.05404 7.57242 7.57678 7.75195 8.30571 8.45659 8.49961 8.72835 9.15298 9.42371 10.60607 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017135 B = 0.002647 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.646468 B =10576.787811 C =11463.760227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.160 3.840 3 H 0.096 0.904 4 C -0.145 4.145 5 C 0.529 3.471 6 O -0.553 6.553 7 N -0.636 5.636 8 C 0.072 3.928 9 C 0.240 3.760 10 O -0.572 6.572 11 C -0.534 4.534 12 H 0.072 0.928 13 C 0.072 3.928 14 N -0.899 5.899 15 Si 0.909 3.091 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.107 3.893 20 N -0.706 5.706 21 C 0.566 3.434 22 O -0.543 6.543 23 C -0.129 4.129 24 C -0.084 4.084 25 C -0.127 4.127 26 C -0.099 4.099 27 C -0.131 4.131 28 C -0.063 4.063 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.394 0.606 37 H 0.275 0.725 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.397 0.603 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.128 0.872 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.077 2.323 12.787 15.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.055 3.945 3 H 0.114 0.886 4 C -0.185 4.185 5 C 0.318 3.682 6 O -0.432 6.432 7 N -0.369 5.369 8 C -0.052 4.052 9 C 0.199 3.801 10 O -0.385 6.385 11 C -0.572 4.572 12 H 0.090 0.910 13 C -0.130 4.130 14 N -0.540 5.540 15 Si 0.736 3.264 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.016 4.016 20 N -0.357 5.357 21 C 0.353 3.647 22 O -0.421 6.421 23 C -0.132 4.132 24 C -0.102 4.102 25 C -0.145 4.145 26 C -0.117 4.117 27 C -0.149 4.149 28 C -0.082 4.082 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.123 0.877 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.250 0.750 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.232 0.768 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.143 0.857 44 H 0.146 0.854 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.004 3.821 13.815 16.417 hybrid contribution 0.302 -1.148 -1.544 1.947 sum -7.702 2.674 12.271 14.733 Atomic orbital electron populations 1.22189 0.94797 1.02282 1.02774 1.20685 0.93217 0.98096 0.82508 0.88568 1.21956 0.93679 1.03328 0.99559 1.19953 0.88984 0.78195 0.81020 1.90697 1.70161 1.43532 1.38857 1.49744 1.11001 1.53015 1.23169 1.24155 1.03243 0.92794 0.84969 1.19483 0.89390 0.82945 0.88328 1.86040 1.91847 1.19059 1.41600 1.21399 1.28060 1.05956 1.01804 0.91007 1.25076 0.93964 0.95128 0.98853 1.69245 1.35308 1.10009 1.39393 0.86361 0.79980 0.77639 0.82404 1.19815 1.20964 1.19852 1.23314 0.82824 0.97894 0.97539 1.45772 1.66756 1.13782 1.09355 1.18131 0.77185 0.86337 0.83051 1.90730 1.50708 1.15414 1.85253 1.20028 1.04235 0.94415 0.94508 1.21372 0.96565 0.93486 0.98809 1.21133 1.00208 1.00449 0.92727 1.21359 0.97865 0.94554 0.97935 1.21149 1.00332 0.94878 0.98510 1.21285 0.95349 1.00396 0.91121 0.92301 0.91778 0.91361 0.88630 0.87688 0.91788 0.90118 0.74992 0.91508 0.89824 0.91688 0.76752 0.85613 0.85342 0.85680 0.85446 0.84745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.48 37.16 0.35 -1.41 16 2 C 0.16 2.20 2.14 -67.93 -0.15 2.06 16 3 H 0.10 1.59 7.39 -51.93 -0.38 1.21 16 4 C -0.14 -2.00 5.07 -27.89 -0.14 -2.14 16 5 C 0.53 10.01 7.94 -10.99 -0.09 9.93 16 6 O -0.55 -12.23 16.13 5.55 0.09 -12.14 16 7 N -0.64 -12.73 3.69 -185.37 -0.68 -13.42 16 8 C 0.07 1.44 7.83 -8.65 -0.07 1.38 16 9 C 0.24 5.54 1.57 -91.39 -0.14 5.40 16 10 O -0.57 -14.17 13.53 -35.23 -0.48 -14.65 16 11 C -0.53 -12.95 8.70 -34.44 -0.30 -13.25 16 12 H 0.07 1.70 7.81 -52.48 -0.41 1.29 16 13 C 0.07 1.74 5.39 -17.82 -0.10 1.64 16 14 N -0.90 -21.93 11.01 55.43 0.61 -21.32 16 15 Si 0.91 18.88 29.54 -169.99 -5.02 13.86 16 16 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 17 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 18 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 19 C 0.11 2.28 8.04 -8.50 -0.07 2.21 16 20 N -0.71 -10.01 4.17 -54.74 -0.23 -10.24 16 21 C 0.57 8.93 7.74 -12.33 -0.10 8.84 16 22 O -0.54 -10.11 16.01 5.32 0.09 -10.02 16 23 C -0.13 -1.75 5.87 -104.97 -0.62 -2.37 16 24 C -0.08 -0.97 9.54 -39.18 -0.37 -1.34 16 25 C -0.13 -1.26 10.03 -39.64 -0.40 -1.65 16 26 C -0.10 -0.90 10.04 -39.49 -0.40 -1.29 16 27 C -0.13 -1.27 10.03 -39.64 -0.40 -1.67 16 28 C -0.06 -0.77 9.60 -39.18 -0.38 -1.14 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.08 1.55 8.10 -51.92 -0.42 1.13 16 36 H 0.39 9.85 6.32 45.56 0.29 10.13 16 37 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 38 H 0.08 1.65 8.10 -51.93 -0.42 1.23 16 39 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.40 5.02 6.64 -40.82 -0.27 4.75 16 41 H 0.13 1.30 6.41 -52.49 -0.34 0.96 16 42 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.13 1.64 7.65 -52.49 -0.40 1.24 16 LS Contribution 382.31 15.07 5.76 5.76 Total: -1.00 -30.51 382.31 -8.93 -39.44 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: -5.72 Total: 17.57 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -3.35 Total: 5.16 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: -0.30 Total: -44.98 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -0.30 Total: -36.81 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.86 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.51 -8.93 -39.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193967157.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.726 kcal (2) G-P(sol) polarization free energy of solvation -30.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds