Wall clock time and date at job start Tue Mar 31 2020 18:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46916 * 2 1 4 4 C 1.52995 * 109.47295 * 239.99616 * 2 1 3 5 5 C 1.50699 * 109.47114 * 175.00153 * 4 2 1 6 6 O 1.21284 * 120.00076 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99991 * 179.97438 * 5 4 2 8 8 C 1.47066 * 136.05803 * 359.63325 * 7 5 4 9 9 C 1.53234 * 88.08395 * 207.19624 * 8 7 5 10 10 O 1.42903 * 114.01435 * 87.71523 * 9 8 7 11 11 C 1.50693 * 114.51169 * 220.45603 * 9 8 7 12 12 H 1.08003 * 120.00438 * 93.84443 * 11 9 8 13 13 C 1.37883 * 120.00311 * 273.85003 * 11 9 8 14 14 N 1.31519 * 119.99705 * 359.97438 * 13 11 9 15 15 Si 1.86793 * 120.00362 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47134 * 60.00056 * 15 13 11 17 17 H 1.48506 * 109.46943 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46985 * 299.99622 * 15 13 11 19 19 C 1.47066 * 136.05684 * 179.97438 * 7 5 4 20 20 N 1.46505 * 109.46864 * 119.99788 * 2 1 3 21 21 C 1.34777 * 119.99724 * 275.00347 * 20 2 1 22 22 O 1.21553 * 120.00290 * 359.97438 * 21 20 2 23 23 C 1.47849 * 119.99699 * 179.72334 * 21 20 2 24 24 C 1.39579 * 120.14302 * 0.02562 * 23 21 20 25 25 C 1.37962 * 119.84859 * 179.76097 * 24 23 21 26 26 C 1.38358 * 120.14590 * 0.48938 * 25 24 23 27 27 C 1.38360 * 120.29323 * 359.76580 * 26 25 24 28 28 C 1.37964 * 120.14355 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.46916 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47246 * 300.00614 * 1 2 3 31 31 H 1.08998 * 109.46377 * 60.00617 * 1 2 3 32 32 H 1.09003 * 109.47445 * 295.00334 * 4 2 1 33 33 H 1.09002 * 109.47282 * 55.00376 * 4 2 1 34 34 H 1.08999 * 113.47038 * 321.93685 * 8 7 5 35 35 H 1.09009 * 113.46810 * 92.37297 * 8 7 5 36 36 H 0.96701 * 114.00046 * 86.39011 * 10 9 8 37 37 H 0.96998 * 120.00286 * 180.02562 * 14 13 11 38 38 H 1.09004 * 113.46777 * 267.62399 * 19 7 5 39 39 H 1.08995 * 113.46906 * 38.06595 * 19 7 5 40 40 H 0.97000 * 119.99792 * 94.99915 * 20 2 1 41 41 H 1.07997 * 120.07564 * 359.97438 * 24 23 21 42 42 H 1.07997 * 119.92162 * 180.24693 * 25 24 23 43 43 H 1.07997 * 119.85058 * 179.74142 * 26 25 24 44 44 H 1.07999 * 119.92745 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.06931 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5420 -0.6150 -1.3126 6 8 4.1451 -0.0212 -0.4439 7 7 4.2151 -1.1806 -2.3340 8 6 3.8643 -1.9611 -3.5302 9 6 5.2553 -2.5998 -3.4584 10 8 5.3192 -3.7628 -2.6305 11 6 5.9295 -2.7815 -4.7938 12 1 6.6055 -2.0254 -5.1649 13 6 5.6832 -3.9132 -5.5421 14 7 4.8603 -4.8342 -5.0901 15 14 6.5183 -4.1382 -7.1978 16 1 7.9916 -4.1444 -7.0123 17 1 6.0899 -5.4277 -7.7970 18 1 6.1376 -3.0218 -8.1000 19 6 5.6241 -1.2942 -2.7399 20 7 2.0184 -0.6906 1.1963 21 6 2.1470 -0.0182 2.3572 22 8 1.8583 1.1613 2.4116 23 6 2.6339 -0.7166 3.5659 24 6 2.9618 -2.0721 3.5079 25 6 3.4203 -2.7166 4.6383 26 6 3.5458 -2.0248 5.8299 27 6 3.2174 -0.6823 5.8955 28 6 2.7628 -0.0246 4.7711 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8898 31 1 -0.3632 0.5138 -0.8901 32 1 1.7517 -1.7716 -1.2055 33 1 1.6056 -0.2618 -2.1369 34 1 3.0534 -2.6702 -3.3635 35 1 3.7132 -1.3486 -4.4192 36 1 5.0864 -4.5833 -3.0862 37 1 4.6873 -5.6305 -5.6163 38 1 5.9461 -0.5026 -3.4164 39 1 6.3068 -1.4374 -1.9024 40 1 2.2490 -1.6318 1.1527 41 1 2.8601 -2.6143 2.5795 42 1 3.6781 -3.7644 4.5938 43 1 3.9012 -2.5350 6.7129 44 1 3.3172 -0.1481 6.8288 45 1 2.5065 1.0232 4.8237 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193967157.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:35 Heat of formation + Delta-G solvation = -79.852659 kcal Electronic energy + Delta-G solvation = -28228.659814 eV Core-core repulsion = 24211.480798 eV Total energy + Delta-G solvation = -4017.179016 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.56218 -41.05340 -39.57831 -38.96167 -36.74957 -35.85038 -34.10770 -33.43632 -31.92195 -31.58342 -30.65917 -28.79716 -26.92445 -26.71138 -25.18482 -23.55897 -22.65448 -21.72134 -21.46595 -19.97698 -19.29185 -19.02023 -17.91199 -17.63615 -17.25872 -16.94716 -16.60588 -16.38315 -16.14926 -15.92298 -15.67111 -15.55377 -15.03673 -14.72826 -14.60314 -14.36575 -14.27496 -13.97828 -13.85032 -13.60478 -13.39485 -13.31173 -13.02981 -12.91170 -12.76375 -12.71242 -12.61893 -12.22125 -12.16742 -12.09622 -11.99199 -11.38382 -11.03763 -10.91190 -10.62748 -10.25275 -10.20482 -9.98132 -9.88129 -9.55854 -8.27066 -6.43433 -0.14709 0.38466 1.48692 1.51397 1.57925 1.65320 1.85503 1.96970 2.14553 2.41374 2.89426 2.95101 3.44237 3.55719 3.71501 3.78995 3.88529 3.99397 4.11612 4.15898 4.21484 4.31880 4.44354 4.48300 4.49282 4.52597 4.60375 4.63841 4.74002 4.82304 4.83871 4.94376 4.96895 4.99857 5.02992 5.25506 5.27222 5.32162 5.42364 5.45982 5.48133 5.73764 5.92727 5.93021 6.45301 6.61585 6.92347 7.15264 7.17367 7.30647 7.51209 8.78635 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017135 B = 0.002647 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.646468 B =10576.787811 C =11463.760227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.159 3.841 3 H 0.062 0.938 4 C -0.131 4.131 5 C 0.523 3.477 6 O -0.590 6.590 7 N -0.637 5.637 8 C 0.088 3.912 9 C 0.220 3.780 10 O -0.585 6.585 11 C -0.554 4.554 12 H 0.071 0.929 13 C 0.035 3.965 14 N -0.914 5.914 15 Si 0.967 3.033 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.268 1.268 19 C 0.104 3.896 20 N -0.702 5.702 21 C 0.557 3.443 22 O -0.584 6.584 23 C -0.158 4.158 24 C -0.093 4.093 25 C -0.130 4.130 26 C -0.091 4.091 27 C -0.128 4.128 28 C -0.081 4.081 29 H 0.078 0.922 30 H 0.048 0.952 31 H 0.089 0.911 32 H 0.118 0.882 33 H 0.133 0.867 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.390 0.610 37 H 0.277 0.723 38 H 0.097 0.903 39 H 0.047 0.953 40 H 0.404 0.596 41 H 0.132 0.868 42 H 0.154 0.846 43 H 0.161 0.839 44 H 0.155 0.845 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.783 1.031 12.795 15.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.054 3.946 3 H 0.081 0.919 4 C -0.171 4.171 5 C 0.315 3.685 6 O -0.472 6.472 7 N -0.370 5.370 8 C -0.035 4.035 9 C 0.179 3.821 10 O -0.399 6.399 11 C -0.592 4.592 12 H 0.089 0.911 13 C -0.165 4.165 14 N -0.555 5.555 15 Si 0.792 3.208 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.193 1.193 19 C -0.019 4.019 20 N -0.352 5.352 21 C 0.346 3.654 22 O -0.466 6.466 23 C -0.161 4.161 24 C -0.112 4.112 25 C -0.148 4.148 26 C -0.109 4.109 27 C -0.146 4.146 28 C -0.100 4.100 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.136 0.864 33 H 0.151 0.849 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.246 0.754 37 H 0.087 0.913 38 H 0.115 0.885 39 H 0.066 0.934 40 H 0.241 0.759 41 H 0.150 0.850 42 H 0.172 0.828 43 H 0.178 0.822 44 H 0.173 0.827 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.725 2.512 13.809 16.527 hybrid contribution 0.602 -0.770 -1.466 1.761 sum -8.124 1.742 12.344 14.879 Atomic orbital electron populations 1.22101 0.92103 1.03641 1.03084 1.20716 0.95162 0.96285 0.82430 0.91925 1.21987 0.89529 1.04980 1.00604 1.20878 0.90946 0.76937 0.79755 1.90688 1.71463 1.45033 1.40017 1.49795 1.10275 1.53333 1.23580 1.23924 1.01594 0.92610 0.85324 1.19731 0.91538 0.82772 0.88074 1.86025 1.92141 1.19498 1.42189 1.21620 1.28643 1.06456 1.02511 0.91120 1.25707 0.94417 0.94849 1.01575 1.69297 1.35773 1.10194 1.40239 0.85462 0.78633 0.77636 0.79037 1.20252 1.20694 1.19252 1.23303 0.83682 0.97822 0.97120 1.45807 1.66197 1.14059 1.09170 1.18609 0.76621 0.86056 0.84091 1.90687 1.52800 1.17121 1.86007 1.20035 1.06453 0.95510 0.94080 1.21526 0.96865 0.92747 1.00030 1.21506 0.99234 1.01698 0.92329 1.21811 0.96051 0.94175 0.98822 1.21482 0.99080 0.95490 0.98560 1.21392 0.96501 1.00250 0.91902 0.90332 0.93278 0.89259 0.86365 0.84873 0.91088 0.88900 0.75445 0.91293 0.88478 0.93436 0.75922 0.85017 0.82837 0.82180 0.82703 0.85875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 9.48 71.98 0.68 -2.39 16 2 C 0.16 4.34 2.14 44.99 0.10 4.44 16 3 H 0.06 2.15 7.39 -2.39 -0.02 2.14 16 4 C -0.13 -3.39 5.07 29.85 0.15 -3.24 16 5 C 0.52 19.55 7.94 87.66 0.70 20.25 16 6 O -0.59 -26.64 16.13 -3.04 -0.05 -26.69 16 7 N -0.64 -25.05 3.69 -859.27 -3.17 -28.22 16 8 C 0.09 3.43 7.83 83.09 0.65 4.08 16 9 C 0.22 10.08 1.57 -11.29 -0.02 10.06 16 10 O -0.59 -29.08 13.53 -148.98 -2.02 -31.10 16 11 C -0.55 -26.61 8.70 25.60 0.22 -26.39 16 12 H 0.07 3.32 7.81 -2.91 -0.02 3.29 16 13 C 0.04 1.66 5.39 84.66 0.46 2.12 16 14 N -0.91 -43.86 11.01 21.45 0.24 -43.62 16 15 Si 0.97 37.91 29.54 68.60 2.03 39.93 16 16 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 17 H -0.28 -10.84 7.11 99.48 0.71 -10.14 16 18 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 19 C 0.10 4.44 8.04 83.18 0.67 5.11 16 20 N -0.70 -20.25 4.17 -445.38 -1.86 -22.10 16 21 C 0.56 18.51 7.74 86.79 0.67 19.18 16 22 O -0.58 -23.26 16.01 -3.88 -0.06 -23.32 16 23 C -0.16 -4.42 5.87 -20.09 -0.12 -4.54 16 24 C -0.09 -2.12 9.54 22.53 0.21 -1.90 16 25 C -0.13 -2.30 10.03 22.23 0.22 -2.07 16 26 C -0.09 -1.39 10.04 22.33 0.22 -1.17 16 27 C -0.13 -2.30 10.03 22.23 0.22 -2.08 16 28 C -0.08 -2.05 9.60 22.53 0.22 -1.83 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 31 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.13 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.09 3.39 8.10 -2.38 -0.02 3.37 16 36 H 0.39 19.56 6.32 -74.06 -0.47 19.10 16 37 H 0.28 12.62 8.31 -92.71 -0.77 11.85 16 38 H 0.10 3.83 8.10 -2.38 -0.02 3.81 16 39 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.40 10.20 6.64 -92.71 -0.62 9.58 16 41 H 0.13 2.69 6.41 -2.91 -0.02 2.67 16 42 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 43 H 0.16 1.35 8.06 -2.91 -0.02 1.32 16 44 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 45 H 0.12 3.25 7.65 -2.91 -0.02 3.22 16 Total: -1.00 -67.71 382.31 0.31 -67.40 By element: Atomic # 1 Polarization: 48.16 SS G_CDS: -0.06 Total: 48.10 kcal Atomic # 6 Polarization: 14.36 SS G_CDS: 5.26 Total: 19.62 kcal Atomic # 7 Polarization: -89.15 SS G_CDS: -4.79 Total: -93.94 kcal Atomic # 8 Polarization: -78.98 SS G_CDS: -2.13 Total: -81.11 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.93 kcal Total: -67.71 0.31 -67.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193967157.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.454 kcal (2) G-P(sol) polarization free energy of solvation -67.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds