Wall clock time and date at job start Tue Mar 31 2020 18:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35910 * 117.00150 * 2 1 4 4 C 1.38857 * 119.98106 * 359.97438 * 3 2 1 5 5 C 1.38244 * 120.24491 * 180.02562 * 4 3 2 6 6 C 1.38003 * 120.20924 * 359.97438 * 5 4 3 7 7 C 1.39608 * 119.96049 * 359.97438 * 6 5 4 8 8 C 1.47653 * 120.12029 * 179.97438 * 7 6 5 9 9 N 1.29082 * 125.86490 * 180.02562 * 8 7 6 10 10 O 1.41484 * 112.88502 * 179.67363 * 9 8 7 11 11 C 1.44200 * 107.54228 * 17.50621 * 10 9 8 12 12 H 1.09004 * 110.97209 * 216.44973 * 11 10 9 13 13 C 1.50699 * 110.97563 * 92.72317 * 11 10 9 14 14 O 1.21281 * 119.99822 * 359.49046 * 13 11 10 15 15 N 1.34777 * 120.00362 * 179.50297 * 13 11 10 16 16 C 1.46503 * 119.99812 * 359.97438 * 15 13 11 17 17 C 1.46497 * 120.00371 * 179.97438 * 15 13 11 18 18 H 1.09003 * 109.46733 * 0.02562 * 17 15 13 19 19 C 1.53000 * 109.47145 * 119.99612 * 17 15 13 20 20 C 1.50694 * 109.47115 * 239.99685 * 17 15 13 21 21 H 1.08000 * 120.00563 * 359.97438 * 20 17 15 22 22 C 1.37885 * 119.99902 * 180.02562 * 20 17 15 23 23 N 1.31516 * 119.99913 * 359.97438 * 22 20 17 24 24 Si 1.86798 * 119.99766 * 179.97438 * 22 20 17 25 25 H 1.48506 * 109.46985 * 179.97438 * 24 22 20 26 26 H 1.48494 * 109.47276 * 299.99832 * 24 22 20 27 27 H 1.48498 * 109.47150 * 60.00043 * 24 22 20 28 28 C 1.51685 * 125.87039 * 0.02562 * 8 7 6 29 29 C 1.38441 * 119.98056 * 180.21080 * 3 2 1 30 30 H 1.09003 * 109.47251 * 300.00186 * 1 2 3 31 31 H 1.09004 * 109.47024 * 59.99849 * 1 2 3 32 32 H 1.08996 * 109.47486 * 180.02562 * 1 2 3 33 33 H 1.07999 * 119.87888 * 359.97438 * 4 3 2 34 34 H 1.07999 * 119.89139 * 179.97438 * 5 4 3 35 35 H 1.07998 * 120.01994 * 179.97438 * 6 5 4 36 36 H 1.08994 * 109.47665 * 270.01072 * 16 15 13 37 37 H 1.09008 * 109.46786 * 30.00680 * 16 15 13 38 38 H 1.08997 * 109.47360 * 150.00121 * 16 15 13 39 39 H 1.08997 * 109.47359 * 180.02562 * 19 17 15 40 40 H 1.09007 * 109.47356 * 300.00099 * 19 17 15 41 41 H 1.09000 * 109.47156 * 59.99824 * 19 17 15 42 42 H 0.97001 * 119.99646 * 179.97438 * 23 22 20 43 43 H 1.08998 * 110.79278 * 46.33546 * 28 8 7 44 44 H 1.09007 * 110.95630 * 282.94599 * 28 8 7 45 45 H 1.08005 * 120.10770 * 0.03586 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2894 2.3753 -0.0005 5 6 1.9114 3.6099 -0.0011 6 6 3.2889 3.6935 -0.0005 7 6 4.0581 2.5284 0.0011 8 6 5.5321 2.6137 0.0011 9 7 6.3476 1.6130 0.0020 10 8 7.7056 2.0099 -0.0057 11 6 7.7567 3.3923 0.4015 12 1 8.5320 3.9311 -0.1434 13 6 7.9668 3.5091 1.8892 14 8 8.0584 2.5089 2.5690 15 7 8.0528 4.7249 2.4643 16 6 7.9425 5.9331 1.6431 17 6 8.2565 4.8384 3.9106 18 1 8.3143 3.8420 4.3486 19 6 9.5597 5.5917 4.1845 20 6 7.1032 5.5908 4.5228 21 1 6.2991 5.9490 3.8971 22 6 7.0751 5.8228 5.8817 23 7 8.0545 5.3870 6.6436 24 14 5.6458 6.7560 6.6404 25 1 5.8523 6.8710 8.1065 26 1 5.5680 8.1133 6.0431 27 1 4.3807 6.0251 6.3750 28 6 6.3485 3.8921 0.0000 29 6 3.4286 1.2829 -0.0044 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 0.2111 2.3161 -0.0014 34 1 1.3174 4.5118 -0.0019 35 1 3.7716 4.6596 -0.0014 36 1 8.9326 6.2284 1.2962 37 1 7.3019 5.7315 0.7844 38 1 7.5105 6.7383 2.2374 39 1 9.7116 5.6758 5.2606 40 1 10.3940 5.0476 3.7417 41 1 9.5024 6.5881 3.7463 42 1 8.0349 5.5506 7.5995 43 1 5.9637 4.5976 0.7365 44 1 6.3661 4.3426 -0.9925 45 1 4.0182 0.3780 -0.0084 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194259083.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:06 Heat of formation + Delta-G solvation = -11.868330 kcal Electronic energy + Delta-G solvation = -28601.031509 eV Core-core repulsion = 24586.800515 eV Total energy + Delta-G solvation = -4014.230994 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.76828 -40.15256 -38.41349 -37.53987 -35.39658 -33.52517 -33.08278 -31.33565 -30.76568 -30.00288 -28.98444 -27.54925 -26.33905 -25.28749 -24.55656 -23.46776 -22.48855 -21.15267 -20.12051 -18.81005 -17.91933 -17.20241 -16.55858 -16.37951 -16.13672 -16.01816 -15.98782 -15.57672 -15.27996 -14.82127 -14.33092 -14.04600 -13.87826 -13.77659 -13.34478 -13.11069 -12.80168 -12.67061 -12.59498 -12.38096 -12.23139 -11.90345 -11.77201 -11.70975 -11.55138 -11.43604 -11.17512 -11.09283 -10.89027 -10.74590 -10.64954 -10.33514 -10.23111 -10.21083 -9.24417 -9.05655 -8.65028 -8.46351 -8.39135 -7.68774 -6.10999 -4.19775 0.54183 1.21435 2.15755 2.86156 3.00522 3.23898 3.26398 3.30301 3.32973 3.60135 3.72868 3.98189 4.34161 4.36995 4.48793 4.53500 4.71888 4.80718 4.82565 4.85613 4.97921 5.15054 5.16228 5.19512 5.20344 5.27933 5.35900 5.46215 5.61612 5.62673 5.80823 5.91486 6.01020 6.14370 6.24363 6.26306 6.41425 6.71203 6.78766 7.01317 7.12251 7.29582 7.38641 7.47592 7.65878 7.96633 8.14175 8.41582 8.76203 8.93865 9.46502 10.94402 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010904 B = 0.003587 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.303712 B = 7803.352105 C = 9352.996011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.124 3.876 4 C -0.193 4.193 5 C -0.081 4.081 6 C -0.122 4.122 7 C 0.006 3.994 8 C 0.117 3.883 9 N -0.266 5.266 10 O -0.164 6.164 11 C 0.026 3.974 12 H 0.135 0.865 13 C 0.487 3.513 14 O -0.526 6.526 15 N -0.588 5.588 16 C 0.072 3.928 17 C 0.259 3.741 18 H 0.063 0.937 19 C -0.146 4.146 20 C -0.528 4.528 21 H 0.059 0.941 22 C 0.066 3.934 23 N -0.886 5.886 24 Si 0.899 3.101 25 H -0.286 1.286 26 H -0.276 1.276 27 H -0.277 1.277 28 C -0.140 4.140 29 C -0.113 4.113 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.011 0.989 41 H 0.030 0.970 42 H 0.265 0.735 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.018 -0.207 -17.158 21.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.079 3.921 4 C -0.213 4.213 5 C -0.099 4.099 6 C -0.142 4.142 7 C 0.005 3.995 8 C -0.073 4.073 9 N -0.005 5.005 10 O -0.183 6.183 11 C -0.037 4.037 12 H 0.153 0.847 13 C 0.272 3.728 14 O -0.402 6.402 15 N -0.321 5.321 16 C -0.072 4.072 17 C 0.159 3.841 18 H 0.081 0.919 19 C -0.204 4.204 20 C -0.567 4.567 21 H 0.077 0.923 22 C -0.137 4.137 23 N -0.524 5.524 24 Si 0.726 3.274 25 H -0.211 1.211 26 H -0.202 1.202 27 H -0.202 1.202 28 C -0.179 4.179 29 C -0.133 4.133 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.118 0.882 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.030 0.970 41 H 0.049 0.951 42 H 0.075 0.925 43 H 0.134 0.866 44 H 0.132 0.868 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.447 -2.162 -16.623 20.879 hybrid contribution -0.908 1.768 0.580 2.070 sum -13.355 -0.394 -16.042 20.877 Atomic orbital electron populations 1.23078 0.78284 1.04078 1.01367 1.86106 1.21423 1.26602 1.88724 1.18808 0.91896 0.84438 0.96976 1.21387 1.00243 0.92334 1.07295 1.20842 0.94118 0.97236 0.97705 1.21155 0.93777 0.97540 1.01726 1.17463 0.87250 0.93331 1.01445 1.24108 0.93778 0.92973 0.96444 1.78407 0.89329 1.21982 1.10762 1.91310 1.16407 1.25151 1.85480 1.23719 0.98835 0.85362 0.95780 0.84716 1.20468 0.78956 0.84588 0.88814 1.90714 1.49722 1.36061 1.63730 1.48240 1.69282 1.03841 1.10730 1.21829 1.00476 0.89756 0.95136 1.18968 0.93740 0.98560 0.72849 0.91949 1.22083 0.96128 0.97854 1.04378 1.21235 1.06083 1.36624 0.92734 0.92292 1.24894 0.96201 0.95664 0.96943 1.69870 1.31478 1.45510 1.05528 0.86554 0.82571 0.80076 0.78189 1.21113 1.20173 1.20231 1.23077 0.91483 0.98075 1.05289 1.20546 0.91626 0.98162 1.02973 0.92500 0.92614 0.88155 0.85121 0.84923 0.84877 0.93495 0.92607 0.89612 0.88765 0.96963 0.95091 0.92542 0.86598 0.86844 0.84075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.54 10.49 -19.46 -0.20 -3.74 16 3 C 0.12 1.47 6.68 -39.28 -0.26 1.21 16 4 C -0.19 -1.86 9.03 -39.35 -0.36 -2.21 16 5 C -0.08 -0.75 10.03 -39.67 -0.40 -1.15 16 6 C -0.12 -1.31 9.61 -39.16 -0.38 -1.69 16 7 C 0.01 0.08 5.87 -105.05 -0.62 -0.53 16 8 C 0.12 1.77 7.16 -79.42 -0.57 1.21 16 9 N -0.27 -4.83 12.12 35.30 0.43 -4.40 16 10 O -0.16 -3.11 11.83 -30.28 -0.36 -3.47 16 11 C 0.03 0.41 3.30 -26.97 -0.09 0.32 16 12 H 0.14 1.67 8.03 -51.93 -0.42 1.25 16 13 C 0.49 10.42 7.06 -10.99 -0.08 10.34 16 14 O -0.53 -14.02 15.91 -13.31 -0.21 -14.23 16 15 N -0.59 -12.24 2.75 -175.26 -0.48 -12.72 16 16 C 0.07 1.09 8.89 59.85 0.53 1.63 16 17 C 0.26 6.57 2.64 -69.09 -0.18 6.39 16 18 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 19 C -0.15 -3.46 8.97 37.16 0.33 -3.13 16 20 C -0.53 -13.97 7.99 -34.44 -0.28 -14.24 16 21 H 0.06 1.50 7.33 -52.49 -0.38 1.12 16 22 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 23 N -0.89 -24.99 11.32 55.43 0.63 -24.36 16 24 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 25 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 C -0.14 -1.78 4.49 -26.48 -0.12 -1.90 16 29 C -0.11 -1.54 9.62 -39.02 -0.38 -1.91 16 30 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 31 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 32 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.13 0.90 6.28 -52.49 -0.33 0.57 16 34 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 35 H 0.13 1.16 7.36 -52.49 -0.39 0.77 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.64 4.54 -51.92 -0.24 0.41 16 38 H 0.09 1.39 7.02 -51.93 -0.36 1.03 16 39 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 40 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.03 0.66 7.67 -51.93 -0.40 0.27 16 42 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.12 1.46 6.21 -51.93 -0.32 1.14 16 44 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.14 2.03 7.84 -52.48 -0.41 1.62 16 LS Contribution 371.22 15.07 5.59 5.59 Total: -1.00 -35.32 371.22 -7.53 -42.85 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -5.97 Total: 1.66 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -1.93 Total: -2.82 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.57 Total: -41.48 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.77 Total: -21.44 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.32 -7.53 -42.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194259083.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.978 kcal (2) G-P(sol) polarization free energy of solvation -35.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds