Wall clock time and date at job start Tue Mar 31 2020 18:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35910 * 117.00150 * 2 1 4 4 C 1.38857 * 119.98106 * 359.97438 * 3 2 1 5 5 C 1.38244 * 120.24491 * 180.02562 * 4 3 2 6 6 C 1.38003 * 120.20924 * 359.97438 * 5 4 3 7 7 C 1.39608 * 119.96049 * 359.97438 * 6 5 4 8 8 C 1.47653 * 120.12029 * 179.97438 * 7 6 5 9 9 N 1.29082 * 125.86490 * 180.02562 * 8 7 6 10 10 O 1.41484 * 112.88502 * 179.67363 * 9 8 7 11 11 C 1.44200 * 107.54228 * 17.50621 * 10 9 8 12 12 H 1.09004 * 110.97209 * 216.44973 * 11 10 9 13 13 C 1.50699 * 110.97563 * 92.72317 * 11 10 9 14 14 O 1.21281 * 119.99822 * 359.49046 * 13 11 10 15 15 N 1.34777 * 120.00362 * 179.50297 * 13 11 10 16 16 C 1.46503 * 119.99812 * 359.97438 * 15 13 11 17 17 C 1.46497 * 120.00371 * 179.97438 * 15 13 11 18 18 H 1.09003 * 109.46733 * 0.02562 * 17 15 13 19 19 C 1.53000 * 109.47145 * 119.99612 * 17 15 13 20 20 C 1.50694 * 109.47115 * 239.99685 * 17 15 13 21 21 H 1.08000 * 120.00563 * 359.97438 * 20 17 15 22 22 C 1.37885 * 119.99902 * 180.02562 * 20 17 15 23 23 N 1.31516 * 119.99913 * 359.97438 * 22 20 17 24 24 Si 1.86798 * 119.99766 * 179.97438 * 22 20 17 25 25 H 1.48506 * 109.46985 * 179.97438 * 24 22 20 26 26 H 1.48494 * 109.47276 * 299.99832 * 24 22 20 27 27 H 1.48498 * 109.47150 * 60.00043 * 24 22 20 28 28 C 1.51685 * 125.87039 * 0.02562 * 8 7 6 29 29 C 1.38441 * 119.98056 * 180.21080 * 3 2 1 30 30 H 1.09003 * 109.47251 * 300.00186 * 1 2 3 31 31 H 1.09004 * 109.47024 * 59.99849 * 1 2 3 32 32 H 1.08996 * 109.47486 * 180.02562 * 1 2 3 33 33 H 1.07999 * 119.87888 * 359.97438 * 4 3 2 34 34 H 1.07999 * 119.89139 * 179.97438 * 5 4 3 35 35 H 1.07998 * 120.01994 * 179.97438 * 6 5 4 36 36 H 1.08994 * 109.47665 * 270.01072 * 16 15 13 37 37 H 1.09008 * 109.46786 * 30.00680 * 16 15 13 38 38 H 1.08997 * 109.47360 * 150.00121 * 16 15 13 39 39 H 1.08997 * 109.47359 * 180.02562 * 19 17 15 40 40 H 1.09007 * 109.47356 * 300.00099 * 19 17 15 41 41 H 1.09000 * 109.47156 * 59.99824 * 19 17 15 42 42 H 0.97001 * 119.99646 * 179.97438 * 23 22 20 43 43 H 1.08998 * 110.79278 * 46.33546 * 28 8 7 44 44 H 1.09007 * 110.95630 * 282.94599 * 28 8 7 45 45 H 1.08005 * 120.10770 * 0.03586 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2894 2.3753 -0.0005 5 6 1.9114 3.6099 -0.0011 6 6 3.2889 3.6935 -0.0005 7 6 4.0581 2.5284 0.0011 8 6 5.5321 2.6137 0.0011 9 7 6.3476 1.6130 0.0020 10 8 7.7056 2.0099 -0.0057 11 6 7.7567 3.3923 0.4015 12 1 8.5320 3.9311 -0.1434 13 6 7.9668 3.5091 1.8892 14 8 8.0584 2.5089 2.5690 15 7 8.0528 4.7249 2.4643 16 6 7.9425 5.9331 1.6431 17 6 8.2565 4.8384 3.9106 18 1 8.3143 3.8420 4.3486 19 6 9.5597 5.5917 4.1845 20 6 7.1032 5.5908 4.5228 21 1 6.2991 5.9490 3.8971 22 6 7.0751 5.8228 5.8817 23 7 8.0545 5.3870 6.6436 24 14 5.6458 6.7560 6.6404 25 1 5.8523 6.8710 8.1065 26 1 5.5680 8.1133 6.0431 27 1 4.3807 6.0251 6.3750 28 6 6.3485 3.8921 0.0000 29 6 3.4286 1.2829 -0.0044 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 0.2111 2.3161 -0.0014 34 1 1.3174 4.5118 -0.0019 35 1 3.7716 4.6596 -0.0014 36 1 8.9326 6.2284 1.2962 37 1 7.3019 5.7315 0.7844 38 1 7.5105 6.7383 2.2374 39 1 9.7116 5.6758 5.2606 40 1 10.3940 5.0476 3.7417 41 1 9.5024 6.5881 3.7463 42 1 8.0349 5.5506 7.5995 43 1 5.9637 4.5976 0.7365 44 1 6.3661 4.3426 -0.9925 45 1 4.0182 0.3780 -0.0084 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194259083.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:05 Heat of formation + Delta-G solvation = -35.445981 kcal Electronic energy + Delta-G solvation = -28602.053913 eV Core-core repulsion = 24586.800515 eV Total energy + Delta-G solvation = -4015.253398 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.00262 -41.05503 -39.89542 -38.41959 -37.19023 -34.96551 -34.60840 -32.69331 -31.78090 -30.98069 -30.55792 -28.15185 -27.72132 -27.32246 -25.87086 -24.42153 -23.45099 -22.71206 -21.19340 -20.30991 -18.91039 -18.72982 -18.19042 -17.43293 -17.38222 -17.12584 -16.93189 -16.68738 -16.49070 -16.40985 -15.77436 -15.46520 -14.83060 -14.61638 -14.56108 -14.42390 -14.27288 -14.03042 -13.76280 -13.54680 -13.43089 -13.11471 -12.99362 -12.92856 -12.82618 -12.74251 -12.71247 -12.66096 -12.23113 -12.17719 -12.12096 -11.93032 -11.73285 -11.48768 -11.21019 -10.57204 -10.38970 -9.76373 -9.40085 -9.24921 -8.14712 -6.32074 -0.40446 0.39378 1.14813 1.41918 1.45574 1.51479 1.53798 1.90711 2.19042 2.27023 2.44552 2.75314 2.95694 3.13872 3.27498 3.30962 3.52685 3.80352 3.97750 4.07806 4.17007 4.26286 4.32875 4.41052 4.41771 4.44539 4.48455 4.61953 4.65001 4.73989 4.74200 4.75922 4.87605 4.90413 5.03708 5.06119 5.21027 5.33753 5.40318 5.45845 5.55008 5.64277 5.66383 6.00554 6.13861 6.21268 6.38920 6.71339 6.75725 7.24303 7.42178 8.90048 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010904 B = 0.003587 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.303712 B = 7803.352105 C = 9352.996011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.342 6.342 3 C 0.111 3.889 4 C -0.183 4.183 5 C -0.076 4.076 6 C -0.117 4.117 7 C -0.021 4.021 8 C 0.128 3.872 9 N -0.320 5.320 10 O -0.196 6.196 11 C 0.030 3.970 12 H 0.180 0.820 13 C 0.475 3.525 14 O -0.598 6.598 15 N -0.589 5.589 16 C 0.063 3.937 17 C 0.261 3.739 18 H -0.002 1.002 19 C -0.131 4.131 20 C -0.536 4.536 21 H 0.070 0.930 22 C 0.012 3.988 23 N -0.921 5.921 24 Si 0.967 3.033 25 H -0.288 1.288 26 H -0.254 1.254 27 H -0.277 1.277 28 C -0.130 4.130 29 C -0.142 4.142 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.163 0.837 34 H 0.172 0.828 35 H 0.161 0.839 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.016 0.984 41 H 0.054 0.946 42 H 0.264 0.736 43 H 0.125 0.875 44 H 0.171 0.829 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.080 3.588 -19.458 25.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.256 6.256 3 C 0.066 3.934 4 C -0.202 4.202 5 C -0.093 4.093 6 C -0.137 4.137 7 C -0.022 4.022 8 C -0.062 4.062 9 N -0.062 5.062 10 O -0.213 6.213 11 C -0.032 4.032 12 H 0.197 0.803 13 C 0.262 3.738 14 O -0.479 6.479 15 N -0.320 5.320 16 C -0.078 4.078 17 C 0.159 3.841 18 H 0.016 0.984 19 C -0.190 4.190 20 C -0.575 4.575 21 H 0.088 0.912 22 C -0.188 4.188 23 N -0.560 5.560 24 Si 0.792 3.208 25 H -0.214 1.214 26 H -0.179 1.179 27 H -0.202 1.202 28 C -0.169 4.169 29 C -0.163 4.163 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.133 0.867 33 H 0.180 0.820 34 H 0.190 0.810 35 H 0.179 0.821 36 H 0.090 0.910 37 H 0.119 0.881 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.035 0.965 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.143 0.857 44 H 0.189 0.811 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -15.502 1.682 -18.976 24.561 hybrid contribution -0.090 0.533 1.291 1.400 sum -15.593 2.216 -17.684 23.681 Atomic orbital electron populations 1.23400 0.75948 1.05673 1.02701 1.86077 1.23940 1.26839 1.88759 1.18944 0.91463 0.85653 0.97343 1.21801 1.01757 0.91548 1.05072 1.21346 0.93814 0.98427 0.95743 1.21533 0.94488 0.97434 1.00243 1.17644 0.86540 0.94309 1.03753 1.24719 0.94636 0.93665 0.93147 1.78443 0.89316 1.23651 1.14817 1.91274 1.17581 1.26810 1.85610 1.23913 1.02418 0.85253 0.91627 0.80277 1.21587 0.77394 0.83571 0.91255 1.90675 1.52823 1.38438 1.65987 1.48215 1.68486 1.05847 1.09460 1.22209 1.03094 0.86984 0.95562 1.18553 0.94613 0.95087 0.75851 0.98419 1.21866 0.95507 0.98875 1.02739 1.21543 1.06521 1.36205 0.93213 0.91152 1.25816 0.98779 0.96625 0.97561 1.70044 1.33526 1.46816 1.05635 0.85474 0.78814 0.79523 0.77027 1.21420 1.17855 1.20234 1.23244 0.88306 0.96872 1.08455 1.20538 0.92821 0.97760 1.05161 0.91501 0.90729 0.86703 0.81975 0.81039 0.82131 0.90981 0.88095 0.90260 0.91524 0.96497 0.92733 0.92731 0.85738 0.81111 0.86864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.34 -7.65 10.49 -92.53 -0.97 -8.62 16 3 C 0.11 2.58 6.68 22.47 0.15 2.73 16 4 C -0.18 -2.93 9.03 22.42 0.20 -2.73 16 5 C -0.08 -1.07 10.03 22.22 0.22 -0.85 16 6 C -0.12 -2.11 9.61 22.54 0.22 -1.89 16 7 C -0.02 -0.55 5.87 -20.14 -0.12 -0.67 16 8 C 0.13 3.80 7.16 45.77 0.33 4.13 16 9 N -0.32 -12.17 12.12 -42.23 -0.51 -12.68 16 10 O -0.20 -7.62 11.83 -20.49 -0.24 -7.86 16 11 C 0.03 0.91 3.30 30.44 0.10 1.01 16 12 H 0.18 3.76 8.03 -2.38 -0.02 3.75 16 13 C 0.47 20.63 7.06 87.66 0.62 21.25 16 14 O -0.60 -34.12 15.91 15.00 0.24 -33.88 16 15 N -0.59 -24.21 2.75 -826.80 -2.27 -26.48 16 16 C 0.06 1.69 8.89 127.77 1.14 2.82 16 17 C 0.26 13.64 2.64 44.24 0.12 13.76 16 18 H 0.00 -0.14 6.90 -2.39 -0.02 -0.16 16 19 C -0.13 -6.33 8.97 71.98 0.65 -5.69 16 20 C -0.54 -28.43 7.99 25.60 0.20 -28.23 16 21 H 0.07 3.47 7.33 -2.91 -0.02 3.45 16 22 C 0.01 0.63 5.30 84.66 0.45 1.08 16 23 N -0.92 -53.58 11.32 21.45 0.24 -53.34 16 24 Si 0.97 41.96 29.54 68.60 2.03 43.99 16 25 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 26 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 27 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 28 C -0.13 -2.86 4.49 30.75 0.14 -2.72 16 29 C -0.14 -4.04 9.62 22.64 0.22 -3.83 16 30 H 0.07 0.62 7.66 -2.39 -0.02 0.60 16 31 H 0.07 0.56 7.66 -2.38 -0.02 0.54 16 32 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.16 1.50 6.28 -2.91 -0.02 1.48 16 34 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 35 H 0.16 1.92 7.36 -2.91 -0.02 1.90 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.10 1.77 4.54 -2.38 -0.01 1.76 16 38 H 0.08 2.28 7.02 -2.39 -0.02 2.26 16 39 H 0.07 3.60 6.07 -2.39 -0.01 3.58 16 40 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 41 H 0.05 2.31 7.67 -2.39 -0.02 2.29 16 42 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 43 H 0.12 2.58 6.21 -2.39 -0.01 2.57 16 44 H 0.17 1.88 8.14 -2.38 -0.02 1.86 16 45 H 0.11 3.70 7.84 -2.91 -0.02 3.68 16 Total: -1.00 -87.38 371.22 5.27 -82.11 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 1.02 Total: 15.28 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 5.74 Total: 1.49 kcal Atomic # 7 Polarization: -89.96 SS G_CDS: -2.54 Total: -92.50 kcal Atomic # 8 Polarization: -49.39 SS G_CDS: -0.97 Total: -50.36 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -87.38 5.27 -82.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194259083.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.663 kcal (2) G-P(sol) polarization free energy of solvation -87.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds