Wall clock time and date at job start Tue Mar 31 2020 18:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35907 * 117.00420 * 2 1 4 4 C 1.38855 * 119.98084 * 359.97438 * 3 2 1 5 5 C 1.38247 * 120.24826 * 179.97438 * 4 3 2 6 6 C 1.38003 * 120.20819 * 0.23554 * 5 4 3 7 7 C 1.39610 * 119.95630 * 359.49075 * 6 5 4 8 8 C 1.47661 * 120.11893 * 180.27913 * 7 6 5 9 9 N 1.29073 * 125.86408 * 180.27752 * 8 7 6 10 10 O 1.41398 * 112.87480 * 179.63987 * 9 8 7 11 11 C 1.44207 * 107.58927 * 17.49411 * 10 9 8 12 12 H 1.09002 * 110.96969 * 216.44406 * 11 10 9 13 13 C 1.50699 * 110.97228 * 92.71479 * 11 10 9 14 14 O 1.21284 * 120.00186 * 356.44719 * 13 11 10 15 15 N 1.34773 * 120.00111 * 176.45270 * 13 11 10 16 16 C 1.46505 * 120.00055 * 359.97438 * 15 13 11 17 17 C 1.46502 * 120.00233 * 179.97438 * 15 13 11 18 18 H 1.09003 * 109.46682 * 359.97438 * 17 15 13 19 19 C 1.52999 * 109.47225 * 239.99783 * 17 15 13 20 20 C 1.50702 * 109.47156 * 119.99754 * 17 15 13 21 21 H 1.07998 * 119.99954 * 0.02562 * 20 17 15 22 22 C 1.37872 * 119.99617 * 180.02562 * 20 17 15 23 23 N 1.31513 * 120.00431 * 359.97438 * 22 20 17 24 24 Si 1.86804 * 119.99913 * 180.02562 * 22 20 17 25 25 H 1.48501 * 109.47214 * 89.99359 * 24 22 20 26 26 H 1.48500 * 109.47177 * 209.99592 * 24 22 20 27 27 H 1.48505 * 109.46952 * 329.99703 * 24 22 20 28 28 C 1.51691 * 125.86558 * 359.96039 * 8 7 6 29 29 C 1.38446 * 119.98368 * 179.97438 * 3 2 1 30 30 H 1.09007 * 109.46976 * 59.99933 * 1 2 3 31 31 H 1.08994 * 109.47430 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47223 * 300.00173 * 1 2 3 33 33 H 1.08002 * 119.87751 * 359.97438 * 4 3 2 34 34 H 1.08002 * 119.89298 * 179.97438 * 5 4 3 35 35 H 1.07993 * 120.01902 * 179.72301 * 6 5 4 36 36 H 1.09002 * 109.47008 * 90.00244 * 16 15 13 37 37 H 1.08995 * 109.46776 * 210.00156 * 16 15 13 38 38 H 1.08999 * 109.46983 * 330.00381 * 16 15 13 39 39 H 1.08995 * 109.47105 * 299.99684 * 19 17 15 40 40 H 1.09005 * 109.47155 * 60.00132 * 19 17 15 41 41 H 1.08998 * 109.47405 * 179.97438 * 19 17 15 42 42 H 0.97007 * 120.00169 * 180.02562 * 23 22 20 43 43 H 1.08991 * 110.79389 * 282.91602 * 28 8 7 44 44 H 1.09004 * 110.78691 * 46.38489 * 28 8 7 45 45 H 1.07995 * 120.10410 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2895 2.3752 -0.0005 5 6 1.9114 3.6099 0.0000 6 6 3.2889 3.6935 -0.0038 7 6 4.0580 2.5283 0.0025 8 6 5.5322 2.6136 0.0046 9 7 6.3475 1.6130 0.0053 10 8 7.7047 2.0098 -0.0008 11 6 7.7564 3.3919 0.4075 12 1 8.5325 3.9306 -0.1363 13 6 7.9653 3.5073 1.8955 14 8 8.0003 2.5082 2.5823 15 7 8.1130 4.7207 2.4632 16 6 8.0712 5.9275 1.6336 17 6 8.3156 4.8329 3.9098 18 1 8.3172 3.8378 4.3546 19 6 7.1840 5.6621 4.5204 20 6 9.6356 5.5074 4.1814 21 1 10.2609 5.8214 3.3588 22 6 10.0449 5.7234 5.4801 23 7 9.2832 5.3415 6.4819 24 14 11.6807 6.5601 5.8169 25 1 11.4779 8.0289 5.8990 26 1 12.2350 6.0643 7.1023 27 1 12.6298 6.2523 4.7170 28 6 6.3485 3.8922 -0.0003 29 6 3.4286 1.2829 0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2111 2.3161 -0.0014 34 1 1.3174 4.5119 -0.0008 35 1 3.7716 4.6595 -0.0079 36 1 7.0441 6.2862 1.5657 37 1 8.6965 6.6990 2.0829 38 1 8.4417 5.6951 0.6352 39 1 7.1819 6.6572 4.0756 40 1 6.2292 5.1742 4.3240 41 1 7.3344 5.7452 5.5967 42 1 9.5710 5.4939 7.3956 43 1 6.3664 4.3359 -0.9957 44 1 5.9628 4.6002 0.7333 45 1 4.0181 0.3780 0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194259095.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:11 Heat of formation + Delta-G solvation = -14.287664 kcal Electronic energy + Delta-G solvation = -28385.258806 eV Core-core repulsion = 24370.922902 eV Total energy + Delta-G solvation = -4014.335904 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.78312 -40.19049 -38.44095 -37.59090 -35.38588 -33.56094 -33.05748 -31.33788 -30.78454 -30.04702 -29.05715 -27.59897 -26.29213 -25.27370 -24.63136 -23.51549 -22.54337 -21.17403 -20.13987 -18.76204 -17.95197 -17.22206 -16.58818 -16.54712 -16.18756 -16.05017 -16.00113 -15.59417 -15.18606 -14.80009 -14.35088 -14.11386 -13.91757 -13.81735 -13.36913 -13.15034 -12.92204 -12.63467 -12.52539 -12.44178 -12.30173 -11.96764 -11.78684 -11.67206 -11.58585 -11.48143 -11.23440 -11.09643 -10.85591 -10.77969 -10.70925 -10.35838 -10.25621 -10.20087 -9.23902 -9.08715 -8.68165 -8.48251 -8.42813 -7.69533 -6.10508 -4.19049 0.48887 1.14950 2.11359 2.82253 2.96302 3.24122 3.29708 3.32181 3.34712 3.54021 3.69975 3.94784 4.32154 4.36967 4.47700 4.48204 4.66619 4.76448 4.80696 4.82205 4.91311 5.09989 5.10753 5.14752 5.21050 5.22482 5.35883 5.44753 5.57798 5.61268 5.76151 5.87191 5.95225 6.08082 6.19837 6.26213 6.35566 6.69433 6.76132 6.99757 7.06850 7.27938 7.37179 7.47031 7.66487 7.96549 8.14208 8.41191 8.77006 8.94037 9.47438 10.94878 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019338 B = 0.002656 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.544271 B =10537.899365 C =10945.600683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.125 3.875 4 C -0.194 4.194 5 C -0.081 4.081 6 C -0.124 4.124 7 C 0.007 3.993 8 C 0.113 3.887 9 N -0.264 5.264 10 O -0.163 6.163 11 C 0.024 3.976 12 H 0.137 0.863 13 C 0.488 3.512 14 O -0.526 6.526 15 N -0.587 5.587 16 C 0.079 3.921 17 C 0.258 3.742 18 H 0.063 0.937 19 C -0.145 4.145 20 C -0.527 4.527 21 H 0.060 0.940 22 C 0.065 3.935 23 N -0.887 5.887 24 Si 0.900 3.100 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.274 1.274 28 C -0.135 4.135 29 C -0.113 4.113 30 H 0.055 0.945 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.045 0.955 37 H 0.085 0.915 38 H 0.052 0.948 39 H 0.030 0.970 40 H 0.010 0.990 41 H 0.094 0.906 42 H 0.264 0.736 43 H 0.113 0.887 44 H 0.110 0.890 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.046 -0.050 -16.473 24.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.080 3.920 4 C -0.213 4.213 5 C -0.099 4.099 6 C -0.144 4.144 7 C 0.006 3.994 8 C -0.077 4.077 9 N -0.003 5.003 10 O -0.183 6.183 11 C -0.038 4.038 12 H 0.154 0.846 13 C 0.272 3.728 14 O -0.402 6.402 15 N -0.321 5.321 16 C -0.065 4.065 17 C 0.158 3.842 18 H 0.081 0.919 19 C -0.204 4.204 20 C -0.566 4.566 21 H 0.078 0.922 22 C -0.138 4.138 23 N -0.525 5.525 24 Si 0.727 3.273 25 H -0.206 1.206 26 H -0.211 1.211 27 H -0.199 1.199 28 C -0.174 4.174 29 C -0.134 4.134 30 H 0.074 0.926 31 H 0.119 0.881 32 H 0.075 0.925 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.064 0.936 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.049 0.951 40 H 0.029 0.971 41 H 0.113 0.887 42 H 0.074 0.926 43 H 0.131 0.869 44 H 0.128 0.872 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.579 -2.005 -15.930 23.808 hybrid contribution 0.742 1.708 0.334 1.892 sum -16.837 -0.298 -15.596 22.953 Atomic orbital electron populations 1.23082 0.78239 1.04129 1.01365 1.86108 1.21460 1.26595 1.88682 1.18816 0.91893 0.84453 0.96870 1.21392 1.00263 0.92329 1.07352 1.20842 0.94103 0.97228 0.97732 1.21149 0.93763 0.97511 1.01981 1.17474 0.87280 0.93313 1.01351 1.24111 0.93751 0.93044 0.96830 1.78380 0.89444 1.22071 1.10357 1.91310 1.16241 1.25308 1.85393 1.23773 0.98910 0.85253 0.95874 0.84591 1.20441 0.78889 0.84567 0.88854 1.90716 1.50200 1.36005 1.63326 1.48251 1.68942 1.04107 1.10769 1.21712 1.01004 0.89635 0.94180 1.18980 0.94023 0.98381 0.72799 0.91926 1.22078 0.95524 0.97894 1.04869 1.21288 1.03388 1.39590 0.92325 0.92168 1.24898 0.97385 0.95512 0.95977 1.69879 1.37087 1.46460 0.99041 0.86477 0.83560 0.79388 0.77866 1.20589 1.21063 1.19900 1.22986 0.91387 0.97922 1.05139 1.20560 0.91638 0.98208 1.02969 0.92592 0.88115 0.92502 0.85103 0.84928 0.84910 0.93628 0.89617 0.92901 0.95077 0.97083 0.88750 0.92613 0.86851 0.87166 0.84046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.33 10.49 -19.45 -0.20 -3.53 16 3 C 0.12 1.38 6.68 -39.28 -0.26 1.12 16 4 C -0.19 -1.69 9.03 -39.35 -0.36 -2.04 16 5 C -0.08 -0.67 10.03 -39.66 -0.40 -1.07 16 6 C -0.12 -1.20 9.61 -39.16 -0.38 -1.58 16 7 C 0.01 0.09 5.87 -105.05 -0.62 -0.53 16 8 C 0.11 1.63 7.15 -79.42 -0.57 1.07 16 9 N -0.26 -4.69 12.11 35.30 0.43 -4.26 16 10 O -0.16 -3.08 11.82 -30.21 -0.36 -3.44 16 11 C 0.02 0.39 3.23 -26.89 -0.09 0.30 16 12 H 0.14 1.74 7.06 -51.93 -0.37 1.37 16 13 C 0.49 10.42 7.04 -10.99 -0.08 10.34 16 14 O -0.53 -14.00 15.92 -13.28 -0.21 -14.21 16 15 N -0.59 -12.22 2.75 -175.26 -0.48 -12.70 16 16 C 0.08 1.19 8.34 59.85 0.50 1.69 16 17 C 0.26 6.55 2.64 -69.08 -0.18 6.37 16 18 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 19 C -0.15 -3.41 8.97 37.16 0.33 -3.08 16 20 C -0.53 -14.08 7.99 -34.44 -0.28 -14.36 16 21 H 0.06 1.57 7.33 -52.49 -0.38 1.18 16 22 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 23 N -0.89 -25.06 11.32 55.43 0.63 -24.43 16 24 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 28 C -0.13 -1.64 5.31 -26.40 -0.14 -1.78 16 29 C -0.11 -1.46 9.62 -39.02 -0.38 -1.83 16 30 H 0.06 0.25 7.66 -51.92 -0.40 -0.14 16 31 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 33 H 0.13 0.79 6.28 -52.49 -0.33 0.46 16 34 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.13 1.01 7.36 -52.49 -0.39 0.62 16 36 H 0.05 0.58 7.54 -51.93 -0.39 0.19 16 37 H 0.09 1.41 7.02 -51.93 -0.36 1.04 16 38 H 0.05 0.62 6.25 -51.93 -0.32 0.30 16 39 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 40 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 41 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 42 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.11 1.27 6.54 -51.93 -0.34 0.93 16 45 H 0.14 1.95 7.84 -52.49 -0.41 1.54 16 LS Contribution 371.86 15.07 5.60 5.60 Total: -1.00 -35.51 371.86 -7.59 -43.10 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -5.99 Total: 0.54 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -1.98 Total: -2.55 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: 0.57 Total: -41.40 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.77 Total: -21.18 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.51 -7.59 -43.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194259095.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.815 kcal (2) G-P(sol) polarization free energy of solvation -35.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds