Wall clock time and date at job start Tue Mar 31 2020 18:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35907 * 116.99467 * 2 1 4 4 C 1.38860 * 119.98426 * 0.02720 * 3 2 1 5 5 C 1.38243 * 120.24462 * 179.97438 * 4 3 2 6 6 C 1.38009 * 120.21045 * 359.73862 * 5 4 3 7 7 C 1.39606 * 119.95655 * 0.51578 * 6 5 4 8 8 C 1.47660 * 120.12013 * 179.77163 * 7 6 5 9 9 N 1.29074 * 125.86855 * 179.74658 * 8 7 6 10 10 O 1.41382 * 112.87935 * 179.65628 * 9 8 7 11 11 C 1.44215 * 107.59369 * 17.49061 * 10 9 8 12 12 H 1.09000 * 111.00081 * 92.72592 * 11 10 9 13 13 C 1.50701 * 110.97436 * 216.48499 * 11 10 9 14 14 O 1.21279 * 119.99863 * 357.35895 * 13 11 10 15 15 N 1.34769 * 119.99833 * 177.36140 * 13 11 10 16 16 C 1.46502 * 120.00125 * 359.97438 * 15 13 11 17 17 C 1.46500 * 120.00163 * 179.97438 * 15 13 11 18 18 H 1.08998 * 109.46845 * 0.02562 * 17 15 13 19 19 C 1.52997 * 109.47473 * 240.00131 * 17 15 13 20 20 C 1.50706 * 109.47187 * 119.99734 * 17 15 13 21 21 H 1.07998 * 119.99629 * 0.02562 * 20 17 15 22 22 C 1.37875 * 119.99955 * 179.97438 * 20 17 15 23 23 N 1.31510 * 120.00308 * 0.02562 * 22 20 17 24 24 Si 1.86800 * 119.99908 * 180.02562 * 22 20 17 25 25 H 1.48503 * 109.46848 * 60.00326 * 24 22 20 26 26 H 1.48500 * 109.47035 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47237 * 300.00475 * 24 22 20 28 28 C 1.51690 * 125.86394 * 359.71341 * 8 7 6 29 29 C 1.38443 * 119.97659 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47110 * 299.99325 * 1 2 3 31 31 H 1.08993 * 109.47658 * 59.99772 * 1 2 3 32 32 H 1.09002 * 109.46999 * 180.02562 * 1 2 3 33 33 H 1.07998 * 119.87553 * 359.97438 * 4 3 2 34 34 H 1.08002 * 119.89327 * 179.97438 * 5 4 3 35 35 H 1.07996 * 120.02155 * 180.25706 * 6 5 4 36 36 H 1.08993 * 109.47565 * 270.00429 * 16 15 13 37 37 H 1.09007 * 109.46761 * 30.00462 * 16 15 13 38 38 H 1.09002 * 109.46792 * 150.00115 * 16 15 13 39 39 H 1.09002 * 109.47153 * 59.99757 * 19 17 15 40 40 H 1.09001 * 109.46832 * 299.99948 * 19 17 15 41 41 H 1.09004 * 109.47261 * 179.97438 * 19 17 15 42 42 H 0.96998 * 120.00365 * 179.97438 * 23 22 20 43 43 H 1.08998 * 110.79133 * 46.37068 * 28 8 7 44 44 H 1.08999 * 110.79484 * 282.89887 * 28 8 7 45 45 H 1.07996 * 120.11122 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2892 2.3753 0.0006 5 6 1.9111 3.6100 0.0011 6 6 3.2886 3.6936 0.0065 7 6 4.0578 2.5286 0.0006 8 6 5.5319 2.6140 0.0013 9 7 6.3474 1.6135 0.0008 10 8 7.7044 2.0103 -0.0061 11 6 7.7564 3.3924 0.4026 12 1 7.9086 3.4760 1.4787 13 6 8.8281 4.1376 -0.3504 14 8 9.5369 3.5482 -1.1385 15 7 8.9989 5.4591 -0.1480 16 6 8.1424 6.1711 0.8036 17 6 10.0411 6.1835 -0.8796 18 1 10.5709 5.4932 -1.5359 19 6 11.0267 6.8010 0.1144 20 6 9.4093 7.2751 -1.7046 21 1 8.3387 7.4154 -1.6854 22 6 10.1983 8.0953 -2.4829 23 7 11.5021 7.9248 -2.5058 24 14 9.4153 9.4488 -3.5048 25 1 8.6930 10.3891 -2.6107 26 1 10.4717 10.1831 -4.2465 27 1 8.4587 8.8499 -4.4700 28 6 6.3481 3.8926 0.0019 29 6 3.4285 1.2830 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 0.2108 2.3160 0.0006 34 1 1.3170 4.5119 0.0011 35 1 3.7712 4.6597 0.0111 36 1 7.2608 6.5495 0.2864 37 1 7.8340 5.4888 1.5958 38 1 8.6953 7.0047 1.2368 39 1 11.4836 6.0115 0.7110 40 1 10.4965 7.4914 0.7704 41 1 11.8024 7.3397 -0.4300 42 1 12.0572 8.5015 -3.0537 43 1 5.9633 4.5969 0.7394 44 1 6.3650 4.3414 -0.9913 45 1 4.0181 0.3782 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194259128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:19 Heat of formation + Delta-G solvation = -13.213837 kcal Electronic energy + Delta-G solvation = -28038.679313 eV Core-core repulsion = 24024.389973 eV Total energy + Delta-G solvation = -4014.289340 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.78254 -40.21907 -38.60379 -37.67209 -35.45140 -33.60042 -33.08844 -31.40097 -30.86492 -30.10782 -29.01395 -27.67374 -26.37240 -25.29995 -24.61719 -23.57608 -22.56904 -21.15495 -20.20273 -18.74776 -18.07360 -17.18550 -16.68537 -16.43625 -16.30279 -16.12473 -16.07457 -15.62231 -15.38555 -14.68714 -14.48998 -14.07715 -14.00798 -13.80131 -13.40625 -13.28954 -12.97442 -12.74328 -12.59369 -12.46843 -12.39895 -12.08271 -11.89497 -11.62686 -11.61100 -11.44421 -11.30871 -11.10947 -10.89161 -10.79034 -10.72008 -10.33269 -10.21660 -10.12906 -9.25883 -9.10293 -8.84584 -8.55486 -8.47228 -7.72597 -6.11651 -4.20443 0.39361 1.07045 2.02517 2.73404 2.87578 3.10992 3.24361 3.30426 3.31791 3.45845 3.72398 3.96722 4.31829 4.36103 4.40831 4.48194 4.60400 4.69580 4.73548 4.80766 4.86741 4.99786 5.03760 5.07803 5.15579 5.19831 5.32397 5.48976 5.53414 5.62883 5.70168 5.87585 5.90868 6.01279 6.12862 6.15663 6.27760 6.70217 6.75748 6.98166 6.98620 7.21845 7.34995 7.43423 7.64747 7.94919 8.11785 8.38322 8.74179 8.90451 9.45972 10.93705 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017005 B = 0.002610 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.160836 B =10725.266710 C =11737.021650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.124 3.876 4 C -0.193 4.193 5 C -0.081 4.081 6 C -0.122 4.122 7 C 0.004 3.996 8 C 0.117 3.883 9 N -0.277 5.277 10 O -0.159 6.159 11 C 0.027 3.973 12 H 0.109 0.891 13 C 0.509 3.491 14 O -0.525 6.525 15 N -0.586 5.586 16 C 0.081 3.919 17 C 0.259 3.741 18 H 0.065 0.935 19 C -0.148 4.148 20 C -0.527 4.527 21 H 0.059 0.941 22 C 0.065 3.935 23 N -0.886 5.886 24 Si 0.900 3.100 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.277 1.277 28 C -0.135 4.135 29 C -0.114 4.114 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.078 0.922 39 H 0.013 0.987 40 H 0.031 0.969 41 H 0.095 0.905 42 H 0.265 0.735 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.987 -7.380 9.502 25.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.079 3.921 4 C -0.212 4.212 5 C -0.099 4.099 6 C -0.143 4.143 7 C 0.003 3.997 8 C -0.072 4.072 9 N -0.016 5.016 10 O -0.180 6.180 11 C -0.036 4.036 12 H 0.126 0.874 13 C 0.293 3.707 14 O -0.401 6.401 15 N -0.319 5.319 16 C -0.063 4.063 17 C 0.159 3.841 18 H 0.082 0.918 19 C -0.206 4.206 20 C -0.566 4.566 21 H 0.077 0.923 22 C -0.138 4.138 23 N -0.524 5.524 24 Si 0.727 3.273 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.202 1.202 28 C -0.175 4.175 29 C -0.134 4.134 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.119 0.881 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.032 0.968 40 H 0.050 0.950 41 H 0.114 0.886 42 H 0.075 0.925 43 H 0.131 0.869 44 H 0.131 0.869 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -21.970 -9.020 8.928 25.373 hybrid contribution -0.691 1.944 -0.437 2.109 sum -22.661 -7.076 8.492 25.213 Atomic orbital electron populations 1.23085 0.78192 1.04154 1.01396 1.86108 1.21495 1.26582 1.88695 1.18820 0.91905 0.84458 0.96949 1.21409 1.00304 0.92332 1.07185 1.20868 0.94141 0.97260 0.97625 1.21203 0.93756 0.97669 1.01624 1.17488 0.87249 0.93304 1.01637 1.24155 0.93653 0.93221 0.96197 1.78399 0.89713 1.22209 1.11254 1.91391 1.15218 1.24063 1.87296 1.23638 0.95190 0.84260 1.00484 0.87398 1.19730 0.84630 0.82968 0.83411 1.90717 1.46364 1.67268 1.35763 1.48207 1.35581 1.06529 1.41605 1.21700 0.95268 0.97626 0.91718 1.19010 0.84064 0.91395 0.89630 0.91763 1.22106 1.01135 0.98916 0.98451 1.21231 0.93688 1.15148 1.26546 0.92285 1.24894 0.94838 0.97548 0.96479 1.69860 1.03706 1.39037 1.39812 0.86540 0.78906 0.81565 0.80274 1.20218 1.21140 1.20230 1.22999 0.90835 0.97445 1.06198 1.20555 0.91621 0.98154 1.03111 0.92547 0.92510 0.88099 0.85086 0.84864 0.84693 0.92886 0.93100 0.90314 0.96837 0.94992 0.88637 0.92528 0.86940 0.86859 0.84058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.96 10.49 -19.45 -0.20 -3.17 16 3 C 0.12 1.22 6.68 -39.28 -0.26 0.96 16 4 C -0.19 -1.48 9.03 -39.35 -0.36 -1.84 16 5 C -0.08 -0.60 10.03 -39.66 -0.40 -0.99 16 6 C -0.12 -1.08 9.61 -39.16 -0.38 -1.45 16 7 C 0.00 0.05 5.87 -105.05 -0.62 -0.57 16 8 C 0.12 1.58 7.16 -79.42 -0.57 1.02 16 9 N -0.28 -4.60 12.11 35.30 0.43 -4.17 16 10 O -0.16 -3.07 11.82 -30.21 -0.36 -3.43 16 11 C 0.03 0.44 3.24 -26.97 -0.09 0.35 16 12 H 0.11 1.46 7.39 -51.93 -0.38 1.08 16 13 C 0.51 10.74 7.05 -10.99 -0.08 10.66 16 14 O -0.52 -13.72 15.91 -13.29 -0.21 -13.93 16 15 N -0.59 -12.02 2.75 -175.26 -0.48 -12.50 16 16 C 0.08 1.22 8.34 59.85 0.50 1.72 16 17 C 0.26 6.46 2.64 -69.08 -0.18 6.28 16 18 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 19 C -0.15 -3.44 8.95 37.16 0.33 -3.11 16 20 C -0.53 -13.81 8.37 -34.44 -0.29 -14.10 16 21 H 0.06 1.49 7.65 -52.49 -0.40 1.09 16 22 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 23 N -0.89 -24.72 11.32 55.43 0.63 -24.09 16 24 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 C -0.14 -1.75 4.66 -26.48 -0.12 -1.87 16 29 C -0.11 -1.30 9.62 -39.01 -0.38 -1.67 16 30 H 0.06 0.21 7.66 -51.93 -0.40 -0.18 16 31 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 32 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.13 0.67 6.28 -52.49 -0.33 0.34 16 34 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.14 0.95 7.36 -52.49 -0.39 0.57 16 36 H 0.05 0.73 8.05 -51.93 -0.42 0.31 16 37 H 0.05 0.58 6.06 -51.92 -0.31 0.27 16 38 H 0.08 1.21 6.43 -51.93 -0.33 0.88 16 39 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.03 0.67 6.66 -51.93 -0.35 0.33 16 41 H 0.10 2.46 6.07 -51.93 -0.32 2.14 16 42 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.11 1.02 7.24 -51.93 -0.38 0.65 16 44 H 0.11 1.60 7.90 -51.93 -0.41 1.19 16 45 H 0.14 1.71 7.84 -52.49 -0.41 1.30 16 LS Contribution 371.40 15.07 5.60 5.60 Total: -1.00 -34.21 371.40 -7.59 -41.80 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -5.98 Total: 0.18 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -1.98 Total: -1.85 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.57 Total: -40.76 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.77 Total: -20.52 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.21 -7.59 -41.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194259128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.588 kcal (2) G-P(sol) polarization free energy of solvation -34.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds