Wall clock time and date at job start Tue Mar 31 2020 18:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35907 * 116.99467 * 2 1 4 4 C 1.38860 * 119.98426 * 0.02720 * 3 2 1 5 5 C 1.38243 * 120.24462 * 179.97438 * 4 3 2 6 6 C 1.38009 * 120.21045 * 359.73862 * 5 4 3 7 7 C 1.39606 * 119.95655 * 0.51578 * 6 5 4 8 8 C 1.47660 * 120.12013 * 179.77163 * 7 6 5 9 9 N 1.29074 * 125.86855 * 179.74658 * 8 7 6 10 10 O 1.41382 * 112.87935 * 179.65628 * 9 8 7 11 11 C 1.44215 * 107.59369 * 17.49061 * 10 9 8 12 12 H 1.09000 * 111.00081 * 92.72592 * 11 10 9 13 13 C 1.50701 * 110.97436 * 216.48499 * 11 10 9 14 14 O 1.21279 * 119.99863 * 357.35895 * 13 11 10 15 15 N 1.34769 * 119.99833 * 177.36140 * 13 11 10 16 16 C 1.46502 * 120.00125 * 359.97438 * 15 13 11 17 17 C 1.46500 * 120.00163 * 179.97438 * 15 13 11 18 18 H 1.08998 * 109.46845 * 0.02562 * 17 15 13 19 19 C 1.52997 * 109.47473 * 240.00131 * 17 15 13 20 20 C 1.50706 * 109.47187 * 119.99734 * 17 15 13 21 21 H 1.07998 * 119.99629 * 0.02562 * 20 17 15 22 22 C 1.37875 * 119.99955 * 179.97438 * 20 17 15 23 23 N 1.31510 * 120.00308 * 0.02562 * 22 20 17 24 24 Si 1.86800 * 119.99908 * 180.02562 * 22 20 17 25 25 H 1.48503 * 109.46848 * 60.00326 * 24 22 20 26 26 H 1.48500 * 109.47035 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47237 * 300.00475 * 24 22 20 28 28 C 1.51690 * 125.86394 * 359.71341 * 8 7 6 29 29 C 1.38443 * 119.97659 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47110 * 299.99325 * 1 2 3 31 31 H 1.08993 * 109.47658 * 59.99772 * 1 2 3 32 32 H 1.09002 * 109.46999 * 180.02562 * 1 2 3 33 33 H 1.07998 * 119.87553 * 359.97438 * 4 3 2 34 34 H 1.08002 * 119.89327 * 179.97438 * 5 4 3 35 35 H 1.07996 * 120.02155 * 180.25706 * 6 5 4 36 36 H 1.08993 * 109.47565 * 270.00429 * 16 15 13 37 37 H 1.09007 * 109.46761 * 30.00462 * 16 15 13 38 38 H 1.09002 * 109.46792 * 150.00115 * 16 15 13 39 39 H 1.09002 * 109.47153 * 59.99757 * 19 17 15 40 40 H 1.09001 * 109.46832 * 299.99948 * 19 17 15 41 41 H 1.09004 * 109.47261 * 179.97438 * 19 17 15 42 42 H 0.96998 * 120.00365 * 179.97438 * 23 22 20 43 43 H 1.08998 * 110.79133 * 46.37068 * 28 8 7 44 44 H 1.08999 * 110.79484 * 282.89887 * 28 8 7 45 45 H 1.07996 * 120.11122 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2892 2.3753 0.0006 5 6 1.9111 3.6100 0.0011 6 6 3.2886 3.6936 0.0065 7 6 4.0578 2.5286 0.0006 8 6 5.5319 2.6140 0.0013 9 7 6.3474 1.6135 0.0008 10 8 7.7044 2.0103 -0.0061 11 6 7.7564 3.3924 0.4026 12 1 7.9086 3.4760 1.4787 13 6 8.8281 4.1376 -0.3504 14 8 9.5369 3.5482 -1.1385 15 7 8.9989 5.4591 -0.1480 16 6 8.1424 6.1711 0.8036 17 6 10.0411 6.1835 -0.8796 18 1 10.5709 5.4932 -1.5359 19 6 11.0267 6.8010 0.1144 20 6 9.4093 7.2751 -1.7046 21 1 8.3387 7.4154 -1.6854 22 6 10.1983 8.0953 -2.4829 23 7 11.5021 7.9248 -2.5058 24 14 9.4153 9.4488 -3.5048 25 1 8.6930 10.3891 -2.6107 26 1 10.4717 10.1831 -4.2465 27 1 8.4587 8.8499 -4.4700 28 6 6.3481 3.8926 0.0019 29 6 3.4285 1.2830 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 0.2108 2.3160 0.0006 34 1 1.3170 4.5119 0.0011 35 1 3.7712 4.6597 0.0111 36 1 7.2608 6.5495 0.2864 37 1 7.8340 5.4888 1.5958 38 1 8.6953 7.0047 1.2368 39 1 11.4836 6.0115 0.7110 40 1 10.4965 7.4914 0.7704 41 1 11.8024 7.3397 -0.4300 42 1 12.0572 8.5015 -3.0537 43 1 5.9633 4.5969 0.7394 44 1 6.3650 4.3414 -0.9913 45 1 4.0181 0.3782 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194259128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:18 Heat of formation + Delta-G solvation = -35.422129 kcal Electronic energy + Delta-G solvation = -28039.642336 eV Core-core repulsion = 24024.389973 eV Total energy + Delta-G solvation = -4015.252363 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.92455 -41.04208 -40.05487 -38.40836 -37.22559 -34.95034 -34.62900 -32.70236 -31.77569 -30.96448 -30.56476 -28.13052 -27.74740 -27.29954 -25.90393 -24.41241 -23.37502 -22.72380 -21.12186 -20.27675 -18.99198 -18.69147 -18.08716 -17.49518 -17.36523 -17.27352 -16.90573 -16.65594 -16.55514 -16.25789 -15.90983 -15.32849 -14.80150 -14.61736 -14.59013 -14.46376 -14.25535 -14.13107 -13.98183 -13.52012 -13.44638 -13.13922 -12.98334 -12.94850 -12.88167 -12.74401 -12.69966 -12.58595 -12.17079 -12.13155 -12.07273 -11.93819 -11.78262 -11.26535 -11.18995 -10.63768 -10.48176 -9.79017 -9.42395 -9.23327 -8.13517 -6.30556 -0.42505 0.41583 1.12526 1.43094 1.46228 1.48424 1.52767 1.58673 2.21623 2.35866 2.48321 2.76262 2.90638 3.15089 3.28281 3.29757 3.55726 3.79708 3.83063 4.01871 4.18954 4.27535 4.31665 4.38343 4.43820 4.46915 4.50154 4.59381 4.66900 4.69756 4.77289 4.79219 4.88460 4.92968 5.03125 5.06621 5.23268 5.36242 5.42694 5.44835 5.57722 5.64950 5.67758 6.00339 6.14136 6.15712 6.41153 6.68092 6.76711 7.20751 7.42394 8.91068 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017005 B = 0.002610 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.160836 B =10725.266710 C =11737.021650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.341 6.341 3 C 0.112 3.888 4 C -0.180 4.180 5 C -0.075 4.075 6 C -0.115 4.115 7 C -0.019 4.019 8 C 0.143 3.857 9 N -0.317 5.317 10 O -0.209 6.209 11 C 0.032 3.968 12 H 0.143 0.857 13 C 0.500 3.500 14 O -0.593 6.593 15 N -0.586 5.586 16 C 0.070 3.930 17 C 0.260 3.740 18 H 0.003 0.997 19 C -0.134 4.134 20 C -0.535 4.535 21 H 0.069 0.931 22 C 0.012 3.988 23 N -0.920 5.920 24 Si 0.967 3.033 25 H -0.257 1.257 26 H -0.289 1.289 27 H -0.277 1.277 28 C -0.127 4.127 29 C -0.137 4.137 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.161 0.839 34 H 0.170 0.830 35 H 0.160 0.840 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.018 0.982 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.264 0.736 43 H 0.165 0.835 44 H 0.104 0.896 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.689 -4.833 11.059 30.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.256 6.256 3 C 0.066 3.934 4 C -0.200 4.200 5 C -0.093 4.093 6 C -0.135 4.135 7 C -0.021 4.021 8 C -0.046 4.046 9 N -0.059 5.059 10 O -0.226 6.226 11 C -0.030 4.030 12 H 0.160 0.840 13 C 0.286 3.714 14 O -0.475 6.475 15 N -0.317 5.317 16 C -0.072 4.072 17 C 0.159 3.841 18 H 0.021 0.979 19 C -0.192 4.192 20 C -0.574 4.574 21 H 0.087 0.913 22 C -0.188 4.188 23 N -0.559 5.559 24 Si 0.792 3.208 25 H -0.181 1.181 26 H -0.214 1.214 27 H -0.203 1.203 28 C -0.166 4.166 29 C -0.158 4.158 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.132 0.868 33 H 0.179 0.821 34 H 0.188 0.812 35 H 0.177 0.823 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.037 0.963 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.183 0.817 44 H 0.122 0.878 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -26.696 -6.450 10.534 29.415 hybrid contribution 0.582 1.101 -0.924 1.551 sum -26.113 -5.348 9.610 28.335 Atomic orbital electron populations 1.23393 0.75983 1.05644 1.02701 1.86080 1.23875 1.26855 1.88743 1.18936 0.91506 0.85562 0.97347 1.21810 1.01767 0.91583 1.04804 1.21326 0.93778 0.98388 0.95790 1.21531 0.94430 0.97473 1.00050 1.17550 0.85891 0.94341 1.04287 1.24625 0.94605 0.92798 0.92591 1.78469 0.88683 1.23253 1.15502 1.91361 1.17608 1.25348 1.88253 1.23662 0.95094 0.83108 1.01091 0.83994 1.20617 0.84931 0.83045 0.82793 1.90676 1.49150 1.68720 1.38911 1.48158 1.35184 1.06595 1.41762 1.22110 0.94922 0.98309 0.91839 1.18613 0.85421 0.90177 0.89913 0.97894 1.21895 1.00229 0.99066 0.98028 1.21523 0.94152 1.15004 1.26683 0.91262 1.25790 0.95253 1.00032 0.97691 1.70029 1.05170 1.40040 1.40632 0.85475 0.77844 0.78801 0.78691 1.18104 1.21440 1.20282 1.23077 0.88543 0.97828 1.07189 1.20530 0.92714 0.97722 1.04798 0.90977 0.91266 0.86796 0.82109 0.81220 0.82286 0.90717 0.88648 0.90372 0.96295 0.92585 0.91371 0.92714 0.81733 0.87773 0.86413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.24 16 2 O -0.34 -6.08 10.49 -92.50 -0.97 -7.05 16 3 C 0.11 2.03 6.68 22.47 0.15 2.18 16 4 C -0.18 -2.07 9.03 22.42 0.20 -1.86 16 5 C -0.08 -0.73 10.03 22.22 0.22 -0.51 16 6 C -0.11 -1.54 9.61 22.55 0.22 -1.32 16 7 C -0.02 -0.40 5.87 -20.14 -0.12 -0.52 16 8 C 0.14 3.71 7.16 45.77 0.33 4.04 16 9 N -0.32 -10.84 12.11 -42.22 -0.51 -11.35 16 10 O -0.21 -8.39 11.82 -20.27 -0.24 -8.63 16 11 C 0.03 1.03 3.24 30.44 0.10 1.13 16 12 H 0.14 3.48 7.39 -2.39 -0.02 3.46 16 13 C 0.50 21.59 7.05 87.66 0.62 22.21 16 14 O -0.59 -33.25 15.91 14.99 0.24 -33.01 16 15 N -0.59 -23.79 2.75 -826.80 -2.28 -26.06 16 16 C 0.07 1.85 8.34 127.77 1.07 2.92 16 17 C 0.26 13.38 2.64 44.25 0.12 13.50 16 18 H 0.00 0.19 6.90 -2.39 -0.02 0.18 16 19 C -0.13 -6.32 8.95 71.98 0.64 -5.68 16 20 C -0.54 -28.04 8.37 25.60 0.21 -27.83 16 21 H 0.07 3.40 7.65 -2.91 -0.02 3.38 16 22 C 0.01 0.63 5.30 84.65 0.45 1.08 16 23 N -0.92 -52.80 11.32 21.45 0.24 -52.56 16 24 Si 0.97 41.81 29.54 68.60 2.03 43.83 16 25 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 26 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 27 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 28 C -0.13 -2.97 4.66 30.76 0.14 -2.82 16 29 C -0.14 -3.11 9.62 22.64 0.22 -2.89 16 30 H 0.07 0.31 7.66 -2.39 -0.02 0.29 16 31 H 0.07 0.35 7.66 -2.39 -0.02 0.33 16 32 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.16 0.83 6.28 -2.91 -0.02 0.82 16 34 H 0.17 0.47 8.06 -2.91 -0.02 0.45 16 35 H 0.16 1.32 7.36 -2.91 -0.02 1.30 16 36 H 0.07 1.70 8.05 -2.39 -0.02 1.68 16 37 H 0.10 1.69 6.06 -2.38 -0.01 1.67 16 38 H 0.08 2.12 6.43 -2.39 -0.02 2.11 16 39 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.06 2.32 6.66 -2.39 -0.02 2.30 16 41 H 0.07 3.62 6.07 -2.38 -0.01 3.60 16 42 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 43 H 0.17 2.05 7.24 -2.39 -0.02 2.03 16 44 H 0.10 2.72 7.90 -2.39 -0.02 2.70 16 45 H 0.12 3.11 7.84 -2.91 -0.02 3.09 16 Total: -1.00 -83.36 371.40 5.21 -78.16 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 1.02 Total: 11.81 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 5.68 Total: 4.86 kcal Atomic # 7 Polarization: -87.43 SS G_CDS: -2.54 Total: -89.97 kcal Atomic # 8 Polarization: -47.72 SS G_CDS: -0.97 Total: -48.69 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Total: -83.36 5.21 -78.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194259128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.734 kcal (2) G-P(sol) polarization free energy of solvation -83.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds