Wall clock time and date at job start Tue Mar 31 2020 17:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.69837 * 2 1 4 4 C 1.53145 * 109.56405 * 239.52044 * 2 1 3 5 5 C 1.52915 * 108.65432 * 172.71689 * 4 2 1 6 6 N 1.45753 * 110.48849 * 50.72463 * 5 4 2 7 7 C 1.33355 * 124.10511 * 340.94844 * 6 5 4 8 8 O 1.21276 * 118.24553 * 182.20173 * 7 6 5 9 9 C 1.50178 * 123.50895 * 2.22427 * 7 6 5 10 10 H 1.08999 * 109.39916 * 222.35403 * 9 7 6 11 11 N 1.46498 * 109.40288 * 102.52239 * 9 7 6 12 12 C 1.34775 * 119.99911 * 84.82370 * 11 9 7 13 13 O 1.21280 * 120.00007 * 0.02562 * 12 11 9 14 14 C 1.50697 * 120.00047 * 179.97438 * 12 11 9 15 15 C 1.50695 * 109.47429 * 180.02562 * 14 12 11 16 16 C 1.38309 * 119.93052 * 269.73064 * 15 14 12 17 17 C 1.38103 * 120.07033 * 179.72045 * 16 15 14 18 18 C 1.38876 * 119.92534 * 0.55077 * 17 16 15 19 19 O 1.35754 * 120.06597 * 179.74522 * 18 17 16 20 20 C 1.34834 * 117.00240 * 174.43894 * 19 18 17 21 21 H 1.08000 * 119.99834 * 5.05697 * 20 19 18 22 22 C 1.38647 * 120.00036 * 185.05818 * 20 19 18 23 23 N 1.31556 * 120.00173 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99816 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47210 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47381 * 119.99837 * 24 22 20 27 27 H 1.48498 * 109.47338 * 239.99920 * 24 22 20 28 28 C 1.38879 * 119.86811 * 359.72293 * 18 17 16 29 29 C 1.38100 * 119.92794 * 0.02562 * 28 18 17 30 30 H 1.09008 * 109.47024 * 299.48766 * 1 2 3 31 31 H 1.08998 * 109.46868 * 59.48280 * 1 2 3 32 32 H 1.08996 * 109.47438 * 179.48655 * 1 2 3 33 33 H 1.09008 * 109.63469 * 52.95062 * 4 2 1 34 34 H 1.09007 * 109.72492 * 292.53523 * 4 2 1 35 35 H 1.09007 * 109.30140 * 290.41237 * 5 4 2 36 36 H 1.08996 * 109.30246 * 171.03907 * 5 4 2 37 37 H 0.97000 * 117.94851 * 160.92885 * 6 5 4 38 38 H 0.96999 * 119.99614 * 264.83103 * 11 9 7 39 39 H 1.08999 * 109.47119 * 60.00610 * 14 12 11 40 40 H 1.09004 * 109.47334 * 300.00756 * 14 12 11 41 41 H 1.07996 * 119.96320 * 359.97438 * 16 15 14 42 42 H 1.07998 * 120.03412 * 180.26813 * 17 16 15 43 43 H 0.97001 * 119.99771 * 179.97438 * 23 22 20 44 44 H 1.08004 * 120.03604 * 180.02562 * 28 18 17 45 45 H 1.07997 * 119.96284 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0428 -0.7320 -1.2436 5 6 3.5608 -0.5633 -1.3192 6 7 4.1776 -0.9197 -0.0477 7 6 3.5208 -0.9794 1.1113 8 8 4.1484 -1.2484 2.1136 9 6 2.0453 -0.7319 1.2418 10 1 1.8572 -0.1221 2.1255 11 7 1.3470 -2.0126 1.3766 12 6 1.2301 -2.5922 2.5877 13 8 1.7025 -2.0532 3.5661 14 6 0.5112 -3.9094 2.7265 15 6 0.5200 -4.3367 4.1716 16 6 1.5536 -5.1192 4.6535 17 6 1.5675 -5.5077 5.9787 18 6 0.5363 -5.1212 6.8249 19 8 0.5445 -5.5058 8.1268 20 6 -0.4228 -5.0024 8.9199 21 1 -1.2056 -4.3913 8.4953 22 6 -0.4125 -5.2692 10.2804 23 7 0.5408 -6.0140 10.7974 24 14 -1.7529 -4.5723 11.3790 25 1 -2.6999 -3.7745 10.5592 26 1 -2.4831 -5.6859 12.0361 27 1 -1.1412 -3.7020 12.4151 28 6 -0.5031 -4.3402 6.3366 29 6 -0.5086 -3.9507 5.0117 30 1 -0.3633 0.5059 0.8946 31 1 -0.3633 0.5218 -0.8853 32 1 -0.3634 -1.0276 -0.0092 33 1 1.5826 -0.3059 -2.1352 34 1 1.7955 -1.7914 -1.1751 35 1 3.7967 0.4742 -1.5559 36 1 3.9562 -1.2075 -2.1045 37 1 5.1253 -1.1266 -0.0443 38 1 0.9689 -2.4435 0.5941 39 1 1.0145 -4.6634 2.1213 40 1 -0.5186 -3.7989 2.3868 41 1 2.3527 -5.4234 3.9938 42 1 2.3771 -6.1151 6.3555 43 1 0.5482 -6.2003 11.7494 44 1 -1.3062 -4.0378 6.9923 45 1 -1.3163 -3.3429 4.6314 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194260020.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:52 Heat of formation + Delta-G solvation = -76.251852 kcal Electronic energy + Delta-G solvation = -28007.087794 eV Core-core repulsion = 23990.064921 eV Total energy + Delta-G solvation = -4017.022873 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.13073 -39.36410 -38.57777 -37.30343 -36.41174 -35.11046 -32.92831 -32.36269 -31.27572 -30.05525 -29.59684 -28.07114 -26.33527 -25.02006 -24.00882 -21.88705 -21.85393 -21.46745 -20.13263 -19.33393 -17.89022 -17.66497 -17.03945 -16.87663 -16.72637 -16.26139 -15.51687 -15.10088 -14.70903 -14.60705 -14.39860 -14.13101 -13.91424 -13.75957 -13.68574 -13.44687 -13.29194 -13.10169 -12.88000 -12.61438 -12.40915 -12.34820 -11.78952 -11.75253 -11.45047 -11.43453 -11.20393 -11.16188 -10.76881 -10.67579 -10.51902 -10.35459 -10.35138 -9.63772 -9.38516 -9.23391 -9.07525 -8.74688 -8.04801 -7.06955 -6.36870 -3.95187 2.17297 2.35323 2.43793 2.76580 3.02224 3.17256 3.19414 3.24937 3.36320 4.03788 4.03889 4.11182 4.14751 4.27534 4.62247 4.72421 4.83135 4.92775 5.01865 5.12441 5.16395 5.21609 5.22635 5.29456 5.33351 5.41067 5.42726 5.48517 5.64747 5.72145 5.77935 5.81473 5.94919 6.23974 6.31322 6.47708 6.51729 6.80047 7.00237 7.01618 7.14617 7.33319 7.41925 7.46236 7.54242 7.93779 8.01278 8.08784 8.38615 9.09017 9.80558 10.81546 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023484 B = 0.002273 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.016000 B =12314.383584 C =12613.284040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 H 0.092 0.908 4 C -0.134 4.134 5 C 0.110 3.890 6 N -0.724 5.724 7 C 0.501 3.499 8 O -0.522 6.522 9 C 0.143 3.857 10 H 0.118 0.882 11 N -0.727 5.727 12 C 0.505 3.495 13 O -0.494 6.494 14 C -0.076 4.076 15 C -0.170 4.170 16 C -0.058 4.058 17 C -0.191 4.191 18 C 0.157 3.843 19 O -0.179 6.179 20 C -0.389 4.389 21 H 0.092 0.908 22 C 0.037 3.963 23 N -0.864 5.864 24 Si 0.941 3.059 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.276 1.276 28 C -0.232 4.232 29 C -0.056 4.056 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.398 0.602 38 H 0.399 0.601 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.268 0.732 44 H 0.126 0.874 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.227 11.131 -30.097 32.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.124 4.124 3 H 0.110 0.890 4 C -0.172 4.172 5 C -0.014 4.014 6 N -0.379 5.379 7 C 0.284 3.716 8 O -0.395 6.395 9 C 0.035 3.965 10 H 0.136 0.864 11 N -0.385 5.385 12 C 0.292 3.708 13 O -0.364 6.364 14 C -0.116 4.116 15 C -0.171 4.171 16 C -0.076 4.076 17 C -0.210 4.210 18 C 0.103 3.897 19 O -0.083 6.083 20 C -0.466 4.466 21 H 0.109 0.891 22 C -0.166 4.166 23 N -0.499 5.499 24 Si 0.766 3.234 25 H -0.191 1.191 26 H -0.202 1.202 27 H -0.202 1.202 28 C -0.252 4.252 29 C -0.075 4.075 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.233 0.767 38 H 0.234 0.766 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.125 0.875 42 H 0.134 0.866 43 H 0.078 0.922 44 H 0.144 0.856 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.413 11.190 -28.401 30.529 hybrid contribution -0.384 0.193 -0.046 0.432 sum 0.029 11.383 -28.447 30.640 Atomic orbital electron populations 1.21782 0.93305 1.02615 1.02520 1.21585 0.97544 1.00082 0.93163 0.89012 1.21957 0.94579 1.01738 0.98937 1.21363 0.93726 1.00891 0.85468 1.45565 1.13431 1.71234 1.07652 1.20716 0.90843 0.77153 0.82841 1.90864 1.67590 1.45879 1.35163 1.20838 0.87484 0.87452 1.00760 0.86417 1.46000 1.59257 1.22713 1.10551 1.21168 0.80010 0.87300 0.82350 1.90810 1.45043 1.63446 1.37141 1.20383 1.00840 0.93514 0.96888 1.18613 0.98760 1.06246 0.93529 1.20405 0.96270 0.96573 0.94357 1.20154 0.99707 1.07967 0.93156 1.19378 0.92779 0.91571 0.85925 1.83980 1.49357 1.60619 1.14322 1.21373 1.04460 1.32010 0.88715 0.89055 1.25285 0.98290 0.96837 0.96222 1.70055 1.31592 1.35170 1.13102 0.85647 0.79504 0.78600 0.79662 1.19130 1.20210 1.20181 1.21095 1.01666 1.06303 0.96112 1.20487 0.96796 0.97092 0.93078 0.91871 0.91984 0.92060 0.89224 0.90866 0.91562 0.90495 0.76666 0.76591 0.89119 0.88977 0.87458 0.86565 0.92160 0.85601 0.87839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 8.90 37.16 0.33 -0.33 16 2 C -0.10 -0.55 2.58 -90.51 -0.23 -0.78 16 3 H 0.09 0.43 8.13 -51.93 -0.42 0.01 16 4 C -0.13 -0.42 5.26 -26.70 -0.14 -0.56 16 5 C 0.11 0.40 7.17 -4.49 -0.03 0.37 16 6 N -0.72 -5.55 5.45 -61.39 -0.33 -5.89 16 7 C 0.50 6.04 7.24 -11.87 -0.09 5.95 16 8 O -0.52 -9.45 17.38 5.56 0.10 -9.35 16 9 C 0.14 1.42 2.28 -69.30 -0.16 1.27 16 10 H 0.12 1.48 7.57 -51.93 -0.39 1.09 16 11 N -0.73 -7.14 4.20 -55.15 -0.23 -7.37 16 12 C 0.51 7.36 7.77 -10.99 -0.09 7.28 16 13 O -0.49 -10.08 15.30 5.56 0.08 -10.00 16 14 C -0.08 -0.99 5.83 -29.04 -0.17 -1.16 16 15 C -0.17 -3.12 4.38 -104.58 -0.46 -3.58 16 16 C -0.06 -1.15 9.69 -39.60 -0.38 -1.53 16 17 C -0.19 -4.41 9.99 -39.40 -0.39 -4.80 16 18 C 0.16 4.07 6.65 -39.11 -0.26 3.81 16 19 O -0.18 -5.39 9.76 0.03 0.00 -5.39 16 20 C -0.39 -11.37 9.49 30.88 0.29 -11.07 16 21 H 0.09 2.48 5.20 -52.49 -0.27 2.21 16 22 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 23 N -0.86 -26.27 13.67 55.48 0.76 -25.51 16 24 Si 0.94 21.33 29.55 -169.99 -5.02 16.31 16 25 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 28 C -0.23 -5.41 9.17 -39.39 -0.36 -5.77 16 29 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 30 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 31 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.06 0.26 6.80 -51.93 -0.35 -0.09 16 33 H 0.09 0.11 8.14 -51.92 -0.42 -0.31 16 34 H 0.07 0.24 6.97 -51.93 -0.36 -0.13 16 35 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 37 H 0.40 2.89 8.80 -40.82 -0.36 2.54 16 38 H 0.40 2.48 6.57 -40.82 -0.27 2.21 16 39 H 0.09 0.96 8.08 -51.93 -0.42 0.54 16 40 H 0.09 0.92 8.08 -51.93 -0.42 0.50 16 41 H 0.11 1.85 8.06 -52.49 -0.42 1.42 16 42 H 0.12 2.60 8.06 -52.49 -0.42 2.17 16 43 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.13 2.91 5.64 -52.48 -0.30 2.61 16 45 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 373.23 15.07 5.62 5.62 Total: -1.00 -39.70 373.23 -7.72 -47.43 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.08 Total: 5.57 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -2.62 Total: -11.43 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.19 Total: -38.77 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: 0.18 Total: -24.73 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -39.70 -7.72 -47.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194260020.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.824 kcal (2) G-P(sol) polarization free energy of solvation -39.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds