Wall clock time and date at job start Tue Mar 31 2020 17:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.69837 * 2 1 4 4 C 1.53145 * 109.56405 * 239.52044 * 2 1 3 5 5 C 1.52915 * 108.65432 * 172.71689 * 4 2 1 6 6 N 1.45753 * 110.48849 * 50.72463 * 5 4 2 7 7 C 1.33355 * 124.10511 * 340.94844 * 6 5 4 8 8 O 1.21276 * 118.24553 * 182.20173 * 7 6 5 9 9 C 1.50178 * 123.50895 * 2.22427 * 7 6 5 10 10 H 1.08999 * 109.39916 * 222.35403 * 9 7 6 11 11 N 1.46498 * 109.40288 * 102.52239 * 9 7 6 12 12 C 1.34775 * 119.99911 * 84.82370 * 11 9 7 13 13 O 1.21280 * 120.00007 * 0.02562 * 12 11 9 14 14 C 1.50697 * 120.00047 * 179.97438 * 12 11 9 15 15 C 1.50695 * 109.47429 * 180.02562 * 14 12 11 16 16 C 1.38309 * 119.93052 * 269.73064 * 15 14 12 17 17 C 1.38103 * 120.07033 * 179.72045 * 16 15 14 18 18 C 1.38876 * 119.92534 * 0.55077 * 17 16 15 19 19 O 1.35754 * 120.06597 * 179.74522 * 18 17 16 20 20 C 1.34834 * 117.00240 * 174.43894 * 19 18 17 21 21 H 1.08000 * 119.99834 * 5.05697 * 20 19 18 22 22 C 1.38647 * 120.00036 * 185.05818 * 20 19 18 23 23 N 1.31556 * 120.00173 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99816 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47210 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47381 * 119.99837 * 24 22 20 27 27 H 1.48498 * 109.47338 * 239.99920 * 24 22 20 28 28 C 1.38879 * 119.86811 * 359.72293 * 18 17 16 29 29 C 1.38100 * 119.92794 * 0.02562 * 28 18 17 30 30 H 1.09008 * 109.47024 * 299.48766 * 1 2 3 31 31 H 1.08998 * 109.46868 * 59.48280 * 1 2 3 32 32 H 1.08996 * 109.47438 * 179.48655 * 1 2 3 33 33 H 1.09008 * 109.63469 * 52.95062 * 4 2 1 34 34 H 1.09007 * 109.72492 * 292.53523 * 4 2 1 35 35 H 1.09007 * 109.30140 * 290.41237 * 5 4 2 36 36 H 1.08996 * 109.30246 * 171.03907 * 5 4 2 37 37 H 0.97000 * 117.94851 * 160.92885 * 6 5 4 38 38 H 0.96999 * 119.99614 * 264.83103 * 11 9 7 39 39 H 1.08999 * 109.47119 * 60.00610 * 14 12 11 40 40 H 1.09004 * 109.47334 * 300.00756 * 14 12 11 41 41 H 1.07996 * 119.96320 * 359.97438 * 16 15 14 42 42 H 1.07998 * 120.03412 * 180.26813 * 17 16 15 43 43 H 0.97001 * 119.99771 * 179.97438 * 23 22 20 44 44 H 1.08004 * 120.03604 * 180.02562 * 28 18 17 45 45 H 1.07997 * 119.96284 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0428 -0.7320 -1.2436 5 6 3.5608 -0.5633 -1.3192 6 7 4.1776 -0.9197 -0.0477 7 6 3.5208 -0.9794 1.1113 8 8 4.1484 -1.2484 2.1136 9 6 2.0453 -0.7319 1.2418 10 1 1.8572 -0.1221 2.1255 11 7 1.3470 -2.0126 1.3766 12 6 1.2301 -2.5922 2.5877 13 8 1.7025 -2.0532 3.5661 14 6 0.5112 -3.9094 2.7265 15 6 0.5200 -4.3367 4.1716 16 6 1.5536 -5.1192 4.6535 17 6 1.5675 -5.5077 5.9787 18 6 0.5363 -5.1212 6.8249 19 8 0.5445 -5.5058 8.1268 20 6 -0.4228 -5.0024 8.9199 21 1 -1.2056 -4.3913 8.4953 22 6 -0.4125 -5.2692 10.2804 23 7 0.5408 -6.0140 10.7974 24 14 -1.7529 -4.5723 11.3790 25 1 -2.6999 -3.7745 10.5592 26 1 -2.4831 -5.6859 12.0361 27 1 -1.1412 -3.7020 12.4151 28 6 -0.5031 -4.3402 6.3366 29 6 -0.5086 -3.9507 5.0117 30 1 -0.3633 0.5059 0.8946 31 1 -0.3633 0.5218 -0.8853 32 1 -0.3634 -1.0276 -0.0092 33 1 1.5826 -0.3059 -2.1352 34 1 1.7955 -1.7914 -1.1751 35 1 3.7967 0.4742 -1.5559 36 1 3.9562 -1.2075 -2.1045 37 1 5.1253 -1.1266 -0.0443 38 1 0.9689 -2.4435 0.5941 39 1 1.0145 -4.6634 2.1213 40 1 -0.5186 -3.7989 2.3868 41 1 2.3527 -5.4234 3.9938 42 1 2.3771 -6.1151 6.3555 43 1 0.5482 -6.2003 11.7494 44 1 -1.3062 -4.0378 6.9923 45 1 -1.3163 -3.3429 4.6314 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194260020.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:51 Heat of formation + Delta-G solvation = -107.693573 kcal Electronic energy + Delta-G solvation = -28008.451209 eV Core-core repulsion = 23990.064921 eV Total energy + Delta-G solvation = -4018.386288 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.96261 -40.88491 -40.04501 -38.29892 -37.97057 -35.93148 -34.40974 -33.75152 -32.72069 -31.78848 -30.22193 -28.89114 -27.84881 -26.84183 -24.51718 -23.65074 -22.83564 -22.44072 -21.50225 -20.01748 -19.84515 -18.87014 -18.44211 -17.88015 -17.60568 -17.19905 -16.53716 -16.37890 -16.16048 -15.83858 -15.71723 -15.52672 -15.34427 -15.04190 -14.76124 -14.62630 -14.41147 -14.16605 -14.09699 -13.80561 -13.60390 -13.33378 -12.99144 -12.80549 -12.72790 -12.49977 -12.29974 -12.25729 -12.18923 -12.10089 -11.79426 -11.63584 -11.26937 -11.18488 -10.93355 -10.75329 -10.06802 -10.02361 -9.77396 -8.91115 -8.48054 -6.16414 0.60313 0.65061 1.32946 1.34064 1.42832 1.52421 1.72684 2.16994 2.25182 2.45195 2.85185 3.16630 3.47666 3.51348 3.61296 3.75231 3.84062 3.88278 4.04726 4.14569 4.21362 4.44709 4.48315 4.49444 4.55558 4.57866 4.60751 4.68650 4.79252 4.87276 4.99841 5.04591 5.07740 5.13885 5.15258 5.28813 5.30716 5.38437 5.45701 5.55332 5.70464 5.76643 5.82669 6.02216 6.21706 6.28639 6.56565 6.96307 7.18960 7.36893 7.77906 8.75916 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023484 B = 0.002273 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.016000 B =12314.383584 C =12613.284040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.097 0.903 4 C -0.130 4.130 5 C 0.100 3.900 6 N -0.709 5.709 7 C 0.495 3.505 8 O -0.598 6.598 9 C 0.142 3.858 10 H 0.082 0.918 11 N -0.702 5.702 12 C 0.505 3.495 13 O -0.564 6.564 14 C -0.074 4.074 15 C -0.146 4.146 16 C -0.060 4.060 17 C -0.208 4.208 18 C 0.112 3.888 19 O -0.234 6.234 20 C -0.414 4.414 21 H 0.101 0.899 22 C -0.027 4.027 23 N -0.923 5.923 24 Si 1.022 2.978 25 H -0.251 1.251 26 H -0.264 1.264 27 H -0.270 1.270 28 C -0.243 4.243 29 C -0.057 4.057 30 H 0.043 0.957 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.123 0.877 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.400 0.600 38 H 0.421 0.579 39 H 0.128 0.872 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.109 0.891 43 H 0.273 0.727 44 H 0.120 0.880 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.304 12.610 -35.546 37.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.116 0.884 4 C -0.168 4.168 5 C -0.023 4.023 6 N -0.361 5.361 7 C 0.280 3.720 8 O -0.477 6.477 9 C 0.033 3.967 10 H 0.100 0.900 11 N -0.360 5.360 12 C 0.293 3.707 13 O -0.440 6.440 14 C -0.113 4.113 15 C -0.147 4.147 16 C -0.078 4.078 17 C -0.228 4.228 18 C 0.062 3.938 19 O -0.141 6.141 20 C -0.490 4.490 21 H 0.118 0.882 22 C -0.223 4.223 23 N -0.561 5.561 24 Si 0.841 3.159 25 H -0.174 1.174 26 H -0.189 1.189 27 H -0.195 1.195 28 C -0.262 4.262 29 C -0.075 4.075 30 H 0.062 0.938 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.141 0.859 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.122 0.878 37 H 0.235 0.765 38 H 0.261 0.739 39 H 0.146 0.854 40 H 0.156 0.844 41 H 0.157 0.843 42 H 0.127 0.873 43 H 0.082 0.918 44 H 0.137 0.863 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.686 12.684 -34.050 36.374 hybrid contribution 0.385 -0.161 1.173 1.245 sum -1.302 12.524 -32.876 35.205 Atomic orbital electron populations 1.21794 0.92372 1.03201 1.02731 1.21585 0.98150 0.99960 0.91638 0.88439 1.22028 0.93972 1.01985 0.98789 1.21783 0.94245 1.02615 0.83616 1.45625 1.13572 1.68857 1.08017 1.21088 0.91579 0.76360 0.82956 1.90834 1.69150 1.49754 1.37959 1.20842 0.86639 0.87236 1.01939 0.90032 1.45678 1.57868 1.22392 1.10031 1.21396 0.79173 0.87468 0.82687 1.90818 1.48183 1.65343 1.39639 1.20530 1.04050 0.93413 0.93327 1.19264 0.96417 1.02631 0.96411 1.20847 0.97584 0.96181 0.93222 1.20411 0.99222 1.08472 0.94665 1.19914 0.94880 0.93736 0.85261 1.83941 1.50816 1.63142 1.16240 1.21883 1.04950 1.32589 0.89541 0.88159 1.26663 1.01177 0.97011 0.97488 1.70205 1.34494 1.37720 1.13710 0.84490 0.76110 0.78169 0.77140 1.17417 1.18896 1.19483 1.21243 1.00849 1.06178 0.97927 1.20950 0.98353 0.96611 0.91587 0.93794 0.89665 0.91302 0.85877 0.90311 0.89784 0.87815 0.76520 0.73906 0.85444 0.84380 0.84336 0.87305 0.91836 0.86268 0.83870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 8.90 71.98 0.64 -0.09 16 2 C -0.09 -0.65 2.58 -10.72 -0.03 -0.68 16 3 H 0.10 0.61 8.13 -2.39 -0.02 0.59 16 4 C -0.13 -0.12 5.26 30.61 0.16 0.04 16 5 C 0.10 0.27 7.17 86.49 0.62 0.89 16 6 N -0.71 -9.35 5.45 -467.32 -2.55 -11.90 16 7 C 0.50 11.66 7.24 87.71 0.64 12.30 16 8 O -0.60 -22.57 17.38 -3.02 -0.05 -22.62 16 9 C 0.14 2.64 2.28 44.11 0.10 2.74 16 10 H 0.08 2.14 7.57 -2.39 -0.02 2.13 16 11 N -0.70 -11.69 4.20 -446.78 -1.88 -13.56 16 12 C 0.51 13.51 7.77 87.66 0.68 14.19 16 13 O -0.56 -23.11 15.30 -3.03 -0.05 -23.15 16 14 C -0.07 -1.57 5.83 29.10 0.17 -1.40 16 15 C -0.15 -5.01 4.38 -19.83 -0.09 -5.09 16 16 C -0.06 -2.35 9.69 22.25 0.22 -2.13 16 17 C -0.21 -10.11 9.99 22.39 0.22 -9.88 16 18 C 0.11 6.17 6.65 22.58 0.15 6.32 16 19 O -0.23 -15.22 9.76 -22.82 -0.22 -15.44 16 20 C -0.41 -25.66 9.49 67.92 0.64 -25.02 16 21 H 0.10 5.74 5.20 -2.91 -0.02 5.73 16 22 C -0.03 -1.59 5.49 84.83 0.47 -1.12 16 23 N -0.92 -59.54 13.67 21.61 0.30 -59.25 16 24 Si 1.02 45.22 29.55 68.60 2.03 47.25 16 25 H -0.25 -10.25 7.11 99.48 0.71 -9.55 16 26 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 27 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 28 C -0.24 -11.61 9.17 22.39 0.21 -11.41 16 29 C -0.06 -2.15 9.69 22.25 0.22 -1.94 16 30 H 0.04 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.08 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.07 0.25 6.80 -2.39 -0.02 0.23 16 33 H 0.12 -0.55 8.14 -2.38 -0.02 -0.57 16 34 H 0.08 0.04 6.97 -2.38 -0.02 0.02 16 35 H 0.08 0.03 8.14 -2.38 -0.02 0.01 16 36 H 0.10 -0.15 8.14 -2.39 -0.02 -0.17 16 37 H 0.40 5.22 8.80 -92.71 -0.82 4.41 16 38 H 0.42 3.13 6.57 -92.71 -0.61 2.52 16 39 H 0.13 1.91 8.08 -2.39 -0.02 1.89 16 40 H 0.14 1.80 8.08 -2.38 -0.02 1.78 16 41 H 0.14 4.48 8.06 -2.91 -0.02 4.45 16 42 H 0.11 5.25 8.06 -2.91 -0.02 5.23 16 43 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 44 H 0.12 5.73 5.64 -2.91 -0.02 5.71 16 45 H 0.14 4.24 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -99.95 373.23 2.21 -97.74 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: -0.38 Total: 23.23 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: 5.01 Total: -22.29 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -4.13 Total: -84.71 kcal Atomic # 8 Polarization: -60.89 SS G_CDS: -0.32 Total: -61.21 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -99.95 2.21 -97.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194260020.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.955 kcal (2) G-P(sol) polarization free energy of solvation -99.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds