Wall clock time and date at job start Tue Mar 31 2020 17:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.69635 * 2 1 4 4 C 1.53364 * 109.67025 * 239.47176 * 2 1 3 5 5 C 1.52919 * 108.66093 * 172.71995 * 4 2 1 6 6 N 1.45759 * 110.49035 * 50.75759 * 5 4 2 7 7 C 1.33354 * 124.10486 * 340.94992 * 6 5 4 8 8 O 1.21275 * 118.24516 * 182.19962 * 7 6 5 9 9 C 1.50181 * 123.50609 * 2.17847 * 7 6 5 10 10 H 1.08994 * 109.40147 * 102.48826 * 9 7 6 11 11 N 1.46502 * 109.39417 * 222.31138 * 9 7 6 12 12 C 1.34775 * 120.00032 * 274.99578 * 11 9 7 13 13 O 1.21284 * 119.99706 * 359.72777 * 12 11 9 14 14 C 1.50698 * 120.00358 * 179.72944 * 12 11 9 15 15 C 1.50695 * 109.47479 * 180.02562 * 14 12 11 16 16 C 1.38308 * 119.92869 * 269.72532 * 15 14 12 17 17 C 1.38102 * 120.06483 * 179.72574 * 16 15 14 18 18 C 1.38877 * 119.93093 * 0.54540 * 17 16 15 19 19 O 1.35750 * 120.06733 * 179.75066 * 18 17 16 20 20 C 1.34826 * 117.00063 * 174.44421 * 19 18 17 21 21 H 1.07995 * 120.00050 * 5.05600 * 20 19 18 22 22 C 1.38655 * 119.99921 * 185.05791 * 20 19 18 23 23 N 1.31552 * 120.00413 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99836 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47182 * 89.99794 * 24 22 20 26 26 H 1.48502 * 109.46945 * 209.99701 * 24 22 20 27 27 H 1.48507 * 109.47120 * 329.99734 * 24 22 20 28 28 C 1.38872 * 119.86343 * 359.72848 * 18 17 16 29 29 C 1.38097 * 119.93186 * 359.97438 * 28 18 17 30 30 H 1.09000 * 109.47424 * 299.48642 * 1 2 3 31 31 H 1.09005 * 109.47225 * 59.47978 * 1 2 3 32 32 H 1.09000 * 109.47578 * 179.48322 * 1 2 3 33 33 H 1.08997 * 109.60573 * 52.96845 * 4 2 1 34 34 H 1.08996 * 109.61595 * 292.47162 * 4 2 1 35 35 H 1.08999 * 109.30462 * 290.44757 * 5 4 2 36 36 H 1.09000 * 109.13744 * 170.96416 * 5 4 2 37 37 H 0.96996 * 117.94642 * 160.91975 * 6 5 4 38 38 H 0.97005 * 120.00108 * 94.73174 * 11 9 7 39 39 H 1.09010 * 109.47069 * 300.00358 * 14 12 11 40 40 H 1.09001 * 109.46901 * 59.99767 * 14 12 11 41 41 H 1.07996 * 119.96537 * 359.97438 * 16 15 14 42 42 H 1.08004 * 120.03112 * 180.27578 * 17 16 15 43 43 H 0.96998 * 120.00655 * 180.02562 * 23 22 20 44 44 H 1.08003 * 120.03221 * 180.02562 * 28 18 17 45 45 H 1.08003 * 119.96737 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8973 1.0262 0.0000 4 6 2.0462 -0.7336 -1.2440 5 6 3.5642 -0.5637 -1.3174 6 7 4.1795 -0.9192 -0.0448 7 6 3.5210 -0.9792 1.1133 8 8 4.1474 -1.2474 2.1165 9 6 2.0453 -0.7319 1.2416 10 1 1.5257 -1.6849 1.3404 11 7 1.7907 0.0866 2.4297 12 6 1.6675 -0.4986 3.6375 13 8 1.7624 -1.7034 3.7400 14 6 1.4117 0.3438 4.8605 15 6 1.3163 -0.5463 6.0727 16 6 0.0905 -1.0576 6.4587 17 6 0.0007 -1.8782 7.5658 18 6 1.1411 -2.1806 8.2984 19 8 1.0552 -2.9829 9.3902 20 6 2.2131 -3.3297 9.9875 21 1 3.1455 -2.9063 9.6447 22 6 2.2066 -4.2300 11.0420 23 7 1.0708 -4.7454 11.4600 24 14 3.8108 -4.7099 11.8701 25 1 4.0865 -3.7779 12.9929 26 1 3.7029 -6.0959 12.3924 27 1 4.9183 -4.6375 10.8834 28 6 2.3695 -1.6611 7.9117 29 6 2.4537 -0.8461 6.8000 30 1 -0.3634 0.5058 0.8945 31 1 -0.3634 0.5219 -0.8853 32 1 -0.3634 -1.0276 -0.0093 33 1 1.5870 -0.3082 -2.1363 34 1 1.7998 -1.7929 -1.1726 35 1 3.7996 0.4739 -1.5539 36 1 3.9586 -1.2103 -2.1013 37 1 5.1273 -1.1255 -0.0400 38 1 1.7146 1.0502 2.3477 39 1 2.2309 1.0507 4.9927 40 1 0.4768 0.8904 4.7361 41 1 -0.7967 -0.8181 5.8913 42 1 -0.9561 -2.2807 7.8641 43 1 1.0662 -5.3749 12.1980 44 1 3.2581 -1.8949 8.4792 45 1 3.4087 -0.4414 6.4989 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194260048.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:00 Heat of formation + Delta-G solvation = -78.621107 kcal Electronic energy + Delta-G solvation = -27907.162181 eV Core-core repulsion = 23890.036569 eV Total energy + Delta-G solvation = -4017.125612 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.02415 -39.33731 -38.54680 -37.19569 -36.41126 -35.14953 -33.01267 -32.34706 -31.25146 -30.02757 -29.52801 -27.99490 -26.30450 -25.01173 -23.79794 -22.11890 -21.84938 -20.99457 -20.13917 -19.63706 -17.87103 -17.67208 -16.94888 -16.84308 -16.73358 -16.44177 -15.17032 -15.01767 -14.68372 -14.55315 -14.37463 -14.24608 -13.93404 -13.71741 -13.66487 -13.47832 -13.21430 -13.19718 -12.69136 -12.58533 -12.38497 -12.20117 -11.87738 -11.71937 -11.41708 -11.39226 -11.28812 -11.16260 -10.73302 -10.65323 -10.50793 -10.34170 -10.31183 -9.58985 -9.38007 -9.21127 -9.04612 -8.72350 -8.02169 -7.04547 -6.35162 -3.93293 2.26321 2.37848 2.47256 2.76754 3.08573 3.19164 3.21075 3.26130 3.30686 4.03249 4.05952 4.12025 4.23539 4.28953 4.65572 4.75944 4.81142 4.89875 5.05706 5.14815 5.18831 5.22213 5.26520 5.33828 5.37161 5.40112 5.44763 5.50895 5.66257 5.76123 5.79675 5.87923 5.96585 6.25259 6.33731 6.50539 6.54314 6.82543 7.01971 7.03958 7.16954 7.35352 7.48272 7.50795 7.56854 7.96318 8.02302 8.10744 8.45555 9.10911 9.82264 10.83197 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020918 B = 0.002328 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.221982 B =12025.521142 C =12802.108289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.100 4.100 3 H 0.083 0.917 4 C -0.131 4.131 5 C 0.110 3.890 6 N -0.726 5.726 7 C 0.499 3.501 8 O -0.523 6.523 9 C 0.143 3.857 10 H 0.118 0.882 11 N -0.726 5.726 12 C 0.515 3.485 13 O -0.503 6.503 14 C -0.077 4.077 15 C -0.169 4.169 16 C -0.060 4.060 17 C -0.192 4.192 18 C 0.156 3.844 19 O -0.180 6.180 20 C -0.389 4.389 21 H 0.092 0.908 22 C 0.038 3.962 23 N -0.865 5.865 24 Si 0.940 3.060 25 H -0.274 1.274 26 H -0.278 1.278 27 H -0.267 1.267 28 C -0.232 4.232 29 C -0.054 4.054 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.398 0.602 38 H 0.399 0.601 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.108 0.892 42 H 0.116 0.884 43 H 0.269 0.731 44 H 0.126 0.874 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.898 14.230 -28.644 31.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 H 0.102 0.898 4 C -0.170 4.170 5 C -0.015 4.015 6 N -0.380 5.380 7 C 0.283 3.717 8 O -0.397 6.397 9 C 0.034 3.966 10 H 0.136 0.864 11 N -0.381 5.381 12 C 0.301 3.699 13 O -0.374 6.374 14 C -0.117 4.117 15 C -0.170 4.170 16 C -0.078 4.078 17 C -0.211 4.211 18 C 0.103 3.897 19 O -0.083 6.083 20 C -0.466 4.466 21 H 0.109 0.891 22 C -0.166 4.166 23 N -0.500 5.500 24 Si 0.765 3.235 25 H -0.199 1.199 26 H -0.203 1.203 27 H -0.192 1.192 28 C -0.251 4.251 29 C -0.072 4.072 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.234 0.766 38 H 0.234 0.766 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.126 0.874 42 H 0.134 0.866 43 H 0.079 0.921 44 H 0.144 0.856 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.768 12.946 -27.666 30.555 hybrid contribution 1.342 0.117 0.108 1.351 sum 2.110 13.062 -27.558 30.570 Atomic orbital electron populations 1.21821 0.93305 1.02800 1.02460 1.21540 0.97436 0.99969 0.93009 0.89827 1.21962 0.94384 1.02153 0.98451 1.21380 0.93806 1.00818 0.85485 1.45579 1.13374 1.71428 1.07652 1.20787 0.90968 0.76994 0.82965 1.90842 1.67630 1.46108 1.35105 1.20730 0.91495 0.98215 0.86196 0.86430 1.45847 1.75821 1.10084 1.06347 1.21031 0.75588 0.89398 0.83837 1.90754 1.46647 1.14889 1.85146 1.20380 1.03304 0.97272 0.90716 1.18627 0.94114 1.06085 0.98165 1.20383 0.96025 0.96046 0.95385 1.20137 0.97231 1.05474 0.98308 1.19376 0.93205 0.90051 0.87079 1.83971 1.33356 1.56630 1.34353 1.21330 0.84675 1.25965 1.14588 0.89112 1.25271 0.98920 0.95700 0.96678 1.70039 1.25367 1.28557 1.26084 0.85726 0.80259 0.78174 0.79363 1.19937 1.20302 1.19188 1.21105 0.98271 1.04678 1.01037 1.20530 0.96487 0.96198 0.93990 0.91807 0.91965 0.92069 0.89060 0.90406 0.91621 0.90426 0.76642 0.76626 0.89073 0.89020 0.87414 0.86593 0.92142 0.85632 0.87804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.12 37.16 0.34 -0.36 16 2 C -0.10 -0.52 2.31 -90.40 -0.21 -0.73 16 3 H 0.08 0.35 8.10 -51.93 -0.42 -0.07 16 4 C -0.13 -0.48 5.32 -26.58 -0.14 -0.62 16 5 C 0.11 0.42 7.17 -4.48 -0.03 0.39 16 6 N -0.73 -5.69 5.45 -61.39 -0.33 -6.02 16 7 C 0.50 6.03 7.44 -11.87 -0.09 5.94 16 8 O -0.52 -9.33 16.59 4.83 0.08 -9.25 16 9 C 0.14 1.41 2.07 -69.30 -0.14 1.27 16 10 H 0.12 1.41 7.52 -51.93 -0.39 1.02 16 11 N -0.73 -7.60 4.70 -55.15 -0.26 -7.86 16 12 C 0.51 7.79 7.25 -10.99 -0.08 7.71 16 13 O -0.50 -10.36 15.28 4.82 0.07 -10.29 16 14 C -0.08 -1.05 5.83 -29.04 -0.17 -1.22 16 15 C -0.17 -3.16 4.38 -104.58 -0.46 -3.62 16 16 C -0.06 -1.17 9.69 -39.61 -0.38 -1.55 16 17 C -0.19 -4.40 9.99 -39.39 -0.39 -4.79 16 18 C 0.16 4.08 6.65 -39.11 -0.26 3.82 16 19 O -0.18 -5.42 9.76 0.06 0.00 -5.42 16 20 C -0.39 -11.50 9.49 30.89 0.29 -11.20 16 21 H 0.09 2.51 5.20 -52.49 -0.27 2.24 16 22 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 23 N -0.87 -26.39 13.67 55.48 0.76 -25.63 16 24 Si 0.94 21.60 29.55 -169.99 -5.02 16.58 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 28 C -0.23 -5.56 9.17 -39.40 -0.36 -5.92 16 29 C -0.05 -1.12 9.69 -39.61 -0.38 -1.50 16 30 H 0.06 0.34 7.97 -51.93 -0.41 -0.07 16 31 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 34 H 0.08 0.35 8.12 -51.93 -0.42 -0.08 16 35 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 37 H 0.40 2.96 8.80 -40.82 -0.36 2.60 16 38 H 0.40 2.76 8.59 -40.82 -0.35 2.41 16 39 H 0.09 1.07 8.08 -51.92 -0.42 0.65 16 40 H 0.09 0.95 8.08 -51.93 -0.42 0.53 16 41 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.12 2.54 8.06 -52.48 -0.42 2.11 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.13 3.01 5.64 -52.48 -0.30 2.71 16 45 H 0.10 1.94 8.06 -52.48 -0.42 1.52 16 LS Contribution 376.68 15.07 5.68 5.68 Total: -1.00 -39.85 376.68 -7.88 -47.73 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -6.28 Total: 5.87 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -2.57 Total: -11.38 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.17 Total: -39.52 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: 0.15 Total: -24.95 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -39.85 -7.88 -47.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194260048.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.895 kcal (2) G-P(sol) polarization free energy of solvation -39.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds