Wall clock time and date at job start Tue Mar 31 2020 17:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.69635 * 2 1 4 4 C 1.53364 * 109.67025 * 239.47176 * 2 1 3 5 5 C 1.52919 * 108.66093 * 172.71995 * 4 2 1 6 6 N 1.45759 * 110.49035 * 50.75759 * 5 4 2 7 7 C 1.33354 * 124.10486 * 340.94992 * 6 5 4 8 8 O 1.21275 * 118.24516 * 182.19962 * 7 6 5 9 9 C 1.50181 * 123.50609 * 2.17847 * 7 6 5 10 10 H 1.08994 * 109.40147 * 102.48826 * 9 7 6 11 11 N 1.46502 * 109.39417 * 222.31138 * 9 7 6 12 12 C 1.34775 * 120.00032 * 274.99578 * 11 9 7 13 13 O 1.21284 * 119.99706 * 359.72777 * 12 11 9 14 14 C 1.50698 * 120.00358 * 179.72944 * 12 11 9 15 15 C 1.50695 * 109.47479 * 180.02562 * 14 12 11 16 16 C 1.38308 * 119.92869 * 269.72532 * 15 14 12 17 17 C 1.38102 * 120.06483 * 179.72574 * 16 15 14 18 18 C 1.38877 * 119.93093 * 0.54540 * 17 16 15 19 19 O 1.35750 * 120.06733 * 179.75066 * 18 17 16 20 20 C 1.34826 * 117.00063 * 174.44421 * 19 18 17 21 21 H 1.07995 * 120.00050 * 5.05600 * 20 19 18 22 22 C 1.38655 * 119.99921 * 185.05791 * 20 19 18 23 23 N 1.31552 * 120.00413 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99836 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47182 * 89.99794 * 24 22 20 26 26 H 1.48502 * 109.46945 * 209.99701 * 24 22 20 27 27 H 1.48507 * 109.47120 * 329.99734 * 24 22 20 28 28 C 1.38872 * 119.86343 * 359.72848 * 18 17 16 29 29 C 1.38097 * 119.93186 * 359.97438 * 28 18 17 30 30 H 1.09000 * 109.47424 * 299.48642 * 1 2 3 31 31 H 1.09005 * 109.47225 * 59.47978 * 1 2 3 32 32 H 1.09000 * 109.47578 * 179.48322 * 1 2 3 33 33 H 1.08997 * 109.60573 * 52.96845 * 4 2 1 34 34 H 1.08996 * 109.61595 * 292.47162 * 4 2 1 35 35 H 1.08999 * 109.30462 * 290.44757 * 5 4 2 36 36 H 1.09000 * 109.13744 * 170.96416 * 5 4 2 37 37 H 0.96996 * 117.94642 * 160.91975 * 6 5 4 38 38 H 0.97005 * 120.00108 * 94.73174 * 11 9 7 39 39 H 1.09010 * 109.47069 * 300.00358 * 14 12 11 40 40 H 1.09001 * 109.46901 * 59.99767 * 14 12 11 41 41 H 1.07996 * 119.96537 * 359.97438 * 16 15 14 42 42 H 1.08004 * 120.03112 * 180.27578 * 17 16 15 43 43 H 0.96998 * 120.00655 * 180.02562 * 23 22 20 44 44 H 1.08003 * 120.03221 * 180.02562 * 28 18 17 45 45 H 1.08003 * 119.96737 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8973 1.0262 0.0000 4 6 2.0462 -0.7336 -1.2440 5 6 3.5642 -0.5637 -1.3174 6 7 4.1795 -0.9192 -0.0448 7 6 3.5210 -0.9792 1.1133 8 8 4.1474 -1.2474 2.1165 9 6 2.0453 -0.7319 1.2416 10 1 1.5257 -1.6849 1.3404 11 7 1.7907 0.0866 2.4297 12 6 1.6675 -0.4986 3.6375 13 8 1.7624 -1.7034 3.7400 14 6 1.4117 0.3438 4.8605 15 6 1.3163 -0.5463 6.0727 16 6 0.0905 -1.0576 6.4587 17 6 0.0007 -1.8782 7.5658 18 6 1.1411 -2.1806 8.2984 19 8 1.0552 -2.9829 9.3902 20 6 2.2131 -3.3297 9.9875 21 1 3.1455 -2.9063 9.6447 22 6 2.2066 -4.2300 11.0420 23 7 1.0708 -4.7454 11.4600 24 14 3.8108 -4.7099 11.8701 25 1 4.0865 -3.7779 12.9929 26 1 3.7029 -6.0959 12.3924 27 1 4.9183 -4.6375 10.8834 28 6 2.3695 -1.6611 7.9117 29 6 2.4537 -0.8461 6.8000 30 1 -0.3634 0.5058 0.8945 31 1 -0.3634 0.5219 -0.8853 32 1 -0.3634 -1.0276 -0.0093 33 1 1.5870 -0.3082 -2.1363 34 1 1.7998 -1.7929 -1.1726 35 1 3.7996 0.4739 -1.5539 36 1 3.9586 -1.2103 -2.1013 37 1 5.1273 -1.1255 -0.0400 38 1 1.7146 1.0502 2.3477 39 1 2.2309 1.0507 4.9927 40 1 0.4768 0.8904 4.7361 41 1 -0.7967 -0.8181 5.8913 42 1 -0.9561 -2.2807 7.8641 43 1 1.0662 -5.3749 12.1980 44 1 3.2581 -1.8949 8.4792 45 1 3.4087 -0.4414 6.4989 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194260048.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:59 Heat of formation + Delta-G solvation = -110.146171 kcal Electronic energy + Delta-G solvation = -27908.529210 eV Core-core repulsion = 23890.036569 eV Total energy + Delta-G solvation = -4018.492641 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.86951 -40.88143 -40.02593 -38.23069 -37.90872 -36.01590 -34.41597 -33.83346 -32.74153 -31.79022 -30.16104 -28.86494 -27.81772 -26.83730 -24.41206 -23.64740 -22.85736 -22.38278 -21.24435 -20.41148 -19.84906 -18.87043 -18.36996 -17.88476 -17.61957 -17.36257 -16.53872 -16.40837 -16.04761 -15.65372 -15.64450 -15.51886 -15.31065 -15.05116 -14.91799 -14.64906 -14.39902 -14.15950 -14.10137 -13.73147 -13.60139 -13.22345 -12.98134 -12.78516 -12.67155 -12.50092 -12.35707 -12.29141 -12.22577 -12.14231 -11.82176 -11.71977 -11.26113 -11.19715 -10.90214 -10.73485 -10.05067 -10.01613 -9.77305 -8.90990 -8.48890 -6.16934 0.60457 0.65665 1.31607 1.40721 1.45476 1.49886 1.74410 2.16234 2.22592 2.45139 2.84038 3.16067 3.47364 3.51507 3.60327 3.79363 3.85400 3.91228 4.03797 4.14555 4.19174 4.36516 4.48216 4.49336 4.55014 4.59091 4.66763 4.69298 4.80053 4.86656 4.98311 5.03358 5.07499 5.11351 5.13549 5.26964 5.29653 5.39648 5.47227 5.55414 5.70422 5.77663 5.83516 6.01556 6.21800 6.29531 6.59867 6.95555 7.19476 7.40657 7.76510 8.74572 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020918 B = 0.002328 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.221982 B =12025.521142 C =12802.108289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.106 0.894 4 C -0.130 4.130 5 C 0.102 3.898 6 N -0.713 5.713 7 C 0.492 3.508 8 O -0.594 6.594 9 C 0.141 3.859 10 H 0.091 0.909 11 N -0.705 5.705 12 C 0.514 3.486 13 O -0.569 6.569 14 C -0.076 4.076 15 C -0.145 4.145 16 C -0.054 4.054 17 C -0.204 4.204 18 C 0.112 3.888 19 O -0.232 6.232 20 C -0.416 4.416 21 H 0.096 0.904 22 C -0.023 4.023 23 N -0.920 5.920 24 Si 1.019 2.981 25 H -0.258 1.258 26 H -0.268 1.268 27 H -0.259 1.259 28 C -0.245 4.245 29 C -0.063 4.063 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.125 0.875 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.400 0.600 38 H 0.421 0.579 39 H 0.120 0.880 40 H 0.140 0.860 41 H 0.153 0.847 42 H 0.116 0.884 43 H 0.273 0.727 44 H 0.114 0.886 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.264 17.528 -32.748 37.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 H 0.124 0.876 4 C -0.168 4.168 5 C -0.021 4.021 6 N -0.365 5.365 7 C 0.277 3.723 8 O -0.474 6.474 9 C 0.032 3.968 10 H 0.108 0.892 11 N -0.359 5.359 12 C 0.302 3.698 13 O -0.446 6.446 14 C -0.115 4.115 15 C -0.146 4.146 16 C -0.072 4.072 17 C -0.223 4.223 18 C 0.062 3.938 19 O -0.138 6.138 20 C -0.492 4.492 21 H 0.114 0.886 22 C -0.220 4.220 23 N -0.558 5.558 24 Si 0.838 3.162 25 H -0.183 1.183 26 H -0.192 1.192 27 H -0.183 1.183 28 C -0.264 4.264 29 C -0.082 4.082 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.143 0.857 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.235 0.765 38 H 0.259 0.741 39 H 0.138 0.862 40 H 0.158 0.842 41 H 0.171 0.829 42 H 0.134 0.866 43 H 0.082 0.918 44 H 0.132 0.868 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.121 16.354 -31.912 35.876 hybrid contribution 1.174 -0.693 0.954 1.664 sum 2.295 15.661 -30.958 34.770 Atomic orbital electron populations 1.21825 0.92707 1.02280 1.03435 1.21560 0.97742 1.00493 0.90952 0.87611 1.22037 0.94287 1.01591 0.98912 1.21769 0.93881 1.02797 0.83640 1.45648 1.13516 1.69238 1.08062 1.21183 0.91709 0.76252 0.83117 1.90811 1.69111 1.49712 1.37726 1.20860 0.90147 0.97916 0.87881 0.89155 1.45587 1.73736 1.11234 1.05384 1.21214 0.74720 0.88553 0.85353 1.90753 1.50015 1.17639 1.86218 1.20523 1.07119 0.96464 0.87385 1.19259 0.92831 1.04001 0.98509 1.20896 0.98197 0.94197 0.93935 1.20466 0.96427 1.06224 0.99215 1.19927 0.95234 0.91065 0.87575 1.83929 1.33943 1.59255 1.36716 1.21794 0.85100 1.26874 1.15414 0.88633 1.26596 1.03273 0.95163 0.96993 1.70178 1.28156 1.30084 1.27408 0.84593 0.74975 0.78281 0.78346 1.18289 1.19222 1.18287 1.21190 0.97235 1.05707 1.02313 1.20889 0.98593 0.95585 0.93085 0.92209 0.89574 0.93427 0.85711 0.91604 0.89071 0.88279 0.76506 0.74113 0.86162 0.84214 0.82941 0.86575 0.91759 0.86825 0.85509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.12 71.98 0.66 -0.20 16 2 C -0.09 -0.59 2.31 -10.65 -0.02 -0.61 16 3 H 0.11 0.31 8.10 -2.39 -0.02 0.29 16 4 C -0.13 -0.44 5.32 30.69 0.16 -0.27 16 5 C 0.10 0.38 7.17 86.49 0.62 1.00 16 6 N -0.71 -9.81 5.45 -467.31 -2.55 -12.35 16 7 C 0.49 11.51 7.44 87.71 0.65 12.16 16 8 O -0.59 -21.63 16.59 -2.31 -0.04 -21.66 16 9 C 0.14 2.57 2.07 44.10 0.09 2.66 16 10 H 0.09 2.19 7.52 -2.39 -0.02 2.18 16 11 N -0.70 -12.87 4.70 -446.78 -2.10 -14.97 16 12 C 0.51 14.46 7.25 87.66 0.64 15.09 16 13 O -0.57 -23.50 15.28 -2.34 -0.04 -23.54 16 14 C -0.08 -1.75 5.83 29.10 0.17 -1.58 16 15 C -0.14 -5.13 4.38 -19.83 -0.09 -5.22 16 16 C -0.05 -2.03 9.69 22.25 0.22 -1.81 16 17 C -0.20 -9.61 9.99 22.39 0.22 -9.39 16 18 C 0.11 6.20 6.65 22.57 0.15 6.35 16 19 O -0.23 -15.06 9.76 -22.69 -0.22 -15.29 16 20 C -0.42 -26.19 9.49 67.92 0.64 -25.54 16 21 H 0.10 5.65 5.20 -2.91 -0.02 5.63 16 22 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 23 N -0.92 -59.28 13.67 21.61 0.30 -58.98 16 24 Si 1.02 45.97 29.55 68.60 2.03 48.00 16 25 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 27 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 28 C -0.25 -12.31 9.17 22.39 0.21 -12.10 16 29 C -0.06 -2.62 9.69 22.25 0.22 -2.40 16 30 H 0.06 0.41 7.97 -2.39 -0.02 0.39 16 31 H 0.09 0.14 8.14 -2.38 -0.02 0.12 16 32 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.12 -0.31 8.14 -2.39 -0.02 -0.33 16 34 H 0.07 0.42 8.12 -2.39 -0.02 0.40 16 35 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 36 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 37 H 0.40 5.41 8.80 -92.71 -0.82 4.59 16 38 H 0.42 3.99 8.59 -92.70 -0.80 3.20 16 39 H 0.12 2.20 8.08 -2.38 -0.02 2.18 16 40 H 0.14 1.99 8.08 -2.39 -0.02 1.97 16 41 H 0.15 4.30 8.06 -2.91 -0.02 4.27 16 42 H 0.12 5.31 8.06 -2.91 -0.02 5.29 16 43 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 44 H 0.11 5.82 5.64 -2.91 -0.02 5.80 16 45 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -98.56 376.68 1.81 -96.75 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: -0.58 Total: 24.84 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: 5.00 Total: -22.80 kcal Atomic # 7 Polarization: -81.96 SS G_CDS: -4.35 Total: -86.31 kcal Atomic # 8 Polarization: -60.20 SS G_CDS: -0.30 Total: -60.49 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -98.56 1.81 -96.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194260048.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.392 kcal (2) G-P(sol) polarization free energy of solvation -98.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds