Wall clock time and date at job start Tue Mar 31 2020 17:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.70480 * 2 1 4 4 C 1.53346 * 109.67783 * 120.52145 * 2 1 3 5 5 C 1.52915 * 108.67671 * 187.26214 * 4 2 1 6 6 N 1.45750 * 110.48590 * 309.24588 * 5 4 2 7 7 C 1.33347 * 124.11351 * 19.07639 * 6 5 4 8 8 O 1.21282 * 118.25420 * 177.77849 * 7 6 5 9 9 C 1.50184 * 123.50369 * 357.77334 * 7 6 5 10 10 H 1.08996 * 109.32859 * 137.66995 * 9 7 6 11 11 N 1.46496 * 109.40363 * 257.45538 * 9 7 6 12 12 C 1.34774 * 120.00204 * 275.43152 * 11 9 7 13 13 O 1.21287 * 120.00008 * 359.97438 * 12 11 9 14 14 C 1.50704 * 120.00294 * 179.97438 * 12 11 9 15 15 C 1.50703 * 109.47057 * 179.97438 * 14 12 11 16 16 C 1.38294 * 119.92983 * 90.00128 * 15 14 12 17 17 C 1.38096 * 120.06969 * 179.97438 * 16 15 14 18 18 C 1.38887 * 119.92909 * 359.97438 * 17 16 15 19 19 O 1.35746 * 120.06604 * 180.02562 * 18 17 16 20 20 C 1.34833 * 117.00531 * 5.54199 * 19 18 17 21 21 H 1.07995 * 119.99432 * 354.93787 * 20 19 18 22 22 C 1.38650 * 120.00178 * 174.66237 * 20 19 18 23 23 N 1.31555 * 119.99962 * 0.27731 * 22 20 19 24 24 Si 1.86799 * 120.00030 * 180.27275 * 22 20 19 25 25 H 1.48501 * 109.47170 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47053 * 120.00131 * 24 22 20 27 27 H 1.48498 * 109.47480 * 240.00467 * 24 22 20 28 28 C 1.38871 * 119.86145 * 0.28182 * 18 17 16 29 29 C 1.38107 * 119.92971 * 359.46603 * 28 18 17 30 30 H 1.09001 * 109.47325 * 180.51591 * 1 2 3 31 31 H 1.09002 * 109.46750 * 300.51609 * 1 2 3 32 32 H 1.09002 * 109.47053 * 60.51216 * 1 2 3 33 33 H 1.09000 * 109.59918 * 307.02153 * 4 2 1 34 34 H 1.08999 * 109.60326 * 67.50026 * 4 2 1 35 35 H 1.09000 * 109.29975 * 69.55561 * 5 4 2 36 36 H 1.09000 * 109.29935 * 188.93547 * 5 4 2 37 37 H 0.97005 * 117.94248 * 199.07637 * 6 5 4 38 38 H 0.96994 * 120.00074 * 95.42663 * 11 9 7 39 39 H 1.08999 * 109.47003 * 59.99937 * 14 12 11 40 40 H 1.08993 * 109.46977 * 299.99956 * 14 12 11 41 41 H 1.08005 * 119.96959 * 359.97438 * 16 15 14 42 42 H 1.08002 * 120.04071 * 180.02562 * 17 16 15 43 43 H 0.97006 * 119.99546 * 179.97438 * 23 22 20 44 44 H 1.07995 * 120.03647 * 179.71990 * 28 18 17 45 45 H 1.08004 * 119.96417 * 180.23311 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0463 -0.7333 1.2438 5 6 3.5643 -0.5640 1.3172 6 7 4.1793 -0.9198 0.0446 7 6 3.5210 -0.9793 -1.1135 8 8 4.1473 -1.2476 -2.1168 9 6 2.0452 -0.7319 -1.2418 10 1 1.8571 -0.1222 -2.1255 11 7 1.3470 -2.0127 -1.3766 12 6 1.2330 -2.5939 -2.5871 13 8 1.7081 -2.0565 -3.5651 14 6 0.5151 -3.9118 -2.7257 15 6 0.5273 -4.3410 -4.1703 16 6 1.5652 -5.1188 -4.6502 17 6 1.5790 -5.5142 -5.9733 18 6 0.5489 -5.1302 -6.8221 19 8 0.5594 -5.5177 -8.1230 20 6 1.5353 -6.3680 -8.5007 21 1 2.3102 -6.6453 -7.8015 22 6 1.5408 -6.8907 -9.7849 23 7 0.5968 -6.5528 -10.6366 24 14 2.8886 -8.0745 -10.3057 25 1 3.8222 -8.2916 -9.1716 26 1 2.2825 -9.3710 -10.7025 27 1 3.6321 -7.5027 -11.4570 28 6 -0.4891 -4.3446 -6.3384 29 6 -0.4998 -3.9569 -5.0129 30 1 -0.3634 -1.0276 0.0093 31 1 -0.3633 0.5218 0.8854 32 1 -0.3633 0.5059 -0.8946 33 1 1.5873 -0.3076 2.1361 34 1 1.7995 -1.7926 1.1727 35 1 3.8000 0.4736 1.5536 36 1 3.9612 -1.2082 2.1018 37 1 5.1271 -1.1264 0.0399 38 1 0.9667 -2.4424 -0.5945 39 1 -0.5155 -3.8013 -2.3886 40 1 1.0174 -4.6647 -2.1184 41 1 2.3658 -5.4175 -3.9897 42 1 2.3895 -6.1220 -6.3476 43 1 0.6009 -6.9182 -11.5352 44 1 -1.2892 -4.0407 -6.9970 45 1 -1.3088 -3.3490 -4.6352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194260061.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:03 Heat of formation + Delta-G solvation = -107.703650 kcal Electronic energy + Delta-G solvation = -28005.853654 eV Core-core repulsion = 23987.466928 eV Total energy + Delta-G solvation = -4018.386725 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.96021 -40.88600 -40.04419 -38.29767 -37.96564 -35.93329 -34.41665 -33.74665 -32.71771 -31.79056 -30.22306 -28.88963 -27.85188 -26.84548 -24.51716 -23.65126 -22.83663 -22.44066 -21.50320 -20.01095 -19.84830 -18.87872 -18.44373 -17.88083 -17.62145 -17.15966 -16.55546 -16.41093 -16.15129 -15.81048 -15.75597 -15.52813 -15.30079 -15.07046 -14.71986 -14.68495 -14.39241 -14.13884 -14.11245 -13.82221 -13.60936 -13.32919 -12.99789 -12.79743 -12.73918 -12.49402 -12.29471 -12.27530 -12.19178 -12.11239 -11.79420 -11.62814 -11.27025 -11.19592 -10.93598 -10.75595 -10.07068 -10.02487 -9.77328 -8.91196 -8.48973 -6.17054 0.60460 0.65003 1.32131 1.33799 1.41577 1.51151 1.72671 2.16387 2.25195 2.44942 2.84364 3.17112 3.47663 3.50620 3.61460 3.74852 3.83986 3.88370 4.03583 4.15058 4.20825 4.44577 4.47556 4.49509 4.55826 4.58003 4.60796 4.69356 4.79769 4.87046 5.00098 5.04744 5.07629 5.13460 5.15386 5.28323 5.30885 5.38556 5.46145 5.55365 5.70484 5.76778 5.82217 6.01737 6.21780 6.28510 6.56502 6.95559 7.18737 7.36794 7.76724 8.74766 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022981 B = 0.002317 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.089912 B =12082.342701 C =12811.245809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.097 0.903 4 C -0.130 4.130 5 C 0.100 3.900 6 N -0.710 5.710 7 C 0.495 3.505 8 O -0.598 6.598 9 C 0.143 3.857 10 H 0.082 0.918 11 N -0.702 5.702 12 C 0.505 3.495 13 O -0.563 6.563 14 C -0.074 4.074 15 C -0.146 4.146 16 C -0.063 4.063 17 C -0.246 4.246 18 C 0.112 3.888 19 O -0.233 6.233 20 C -0.415 4.415 21 H 0.097 0.903 22 C -0.024 4.024 23 N -0.920 5.920 24 Si 1.020 2.980 25 H -0.255 1.255 26 H -0.263 1.263 27 H -0.268 1.268 28 C -0.205 4.205 29 C -0.055 4.055 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.044 0.956 33 H 0.123 0.877 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.399 0.601 38 H 0.421 0.579 39 H 0.141 0.859 40 H 0.125 0.875 41 H 0.130 0.870 42 H 0.114 0.886 43 H 0.273 0.727 44 H 0.115 0.885 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.066 11.799 35.737 37.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.116 0.884 4 C -0.168 4.168 5 C -0.023 4.023 6 N -0.361 5.361 7 C 0.280 3.720 8 O -0.477 6.477 9 C 0.034 3.966 10 H 0.100 0.900 11 N -0.360 5.360 12 C 0.293 3.707 13 O -0.440 6.440 14 C -0.113 4.113 15 C -0.147 4.147 16 C -0.081 4.081 17 C -0.265 4.265 18 C 0.062 3.938 19 O -0.140 6.140 20 C -0.491 4.491 21 H 0.115 0.885 22 C -0.221 4.221 23 N -0.559 5.559 24 Si 0.839 3.161 25 H -0.178 1.178 26 H -0.188 1.188 27 H -0.193 1.193 28 C -0.225 4.225 29 C -0.072 4.072 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.141 0.859 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.121 0.879 37 H 0.235 0.765 38 H 0.261 0.739 39 H 0.158 0.842 40 H 0.143 0.857 41 H 0.148 0.852 42 H 0.132 0.868 43 H 0.082 0.918 44 H 0.133 0.867 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.265 12.124 34.160 36.249 hybrid contribution 1.107 -0.668 -0.996 1.632 sum 1.372 11.456 33.164 35.114 Atomic orbital electron populations 1.21789 0.92311 1.03214 1.02763 1.21622 0.98175 0.99940 0.91588 0.88429 1.22064 0.93935 1.01943 0.98832 1.21782 0.94288 1.02616 0.83574 1.45629 1.13551 1.68868 1.08041 1.21106 0.91615 0.76352 0.82951 1.90837 1.69250 1.49771 1.37868 1.20846 0.86584 0.87227 1.01977 0.89989 1.45678 1.57811 1.22400 1.10084 1.21391 0.79187 0.87443 0.82694 1.90818 1.48056 1.65432 1.39645 1.20529 1.04151 0.93331 0.93320 1.19263 0.96354 1.02650 0.96457 1.20899 0.97408 0.96074 0.93722 1.21201 1.00932 1.08713 0.95658 1.19944 0.94923 0.94335 0.84588 1.83931 1.50367 1.58093 1.21565 1.21841 1.04893 1.23317 0.99018 0.88540 1.26614 1.01167 0.99827 0.94492 1.70194 1.34772 1.44486 1.06432 0.84515 0.76090 0.76651 0.78806 1.17825 1.18767 1.19287 1.20465 0.99219 1.05298 0.97485 1.20899 0.98519 0.96789 0.91034 0.91297 0.89674 0.93712 0.85859 0.90356 0.89760 0.87851 0.76547 0.73912 0.84153 0.85721 0.85225 0.86823 0.91773 0.86714 0.83009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.70 8.91 71.98 0.64 -0.06 16 2 C -0.09 -0.64 2.58 -10.65 -0.03 -0.67 16 3 H 0.10 0.60 8.13 -2.38 -0.02 0.58 16 4 C -0.13 -0.12 5.28 30.68 0.16 0.04 16 5 C 0.10 0.28 7.17 86.49 0.62 0.90 16 6 N -0.71 -9.44 5.45 -467.33 -2.55 -11.98 16 7 C 0.49 11.69 7.24 87.72 0.64 12.32 16 8 O -0.60 -22.66 17.36 -3.02 -0.05 -22.71 16 9 C 0.14 2.62 2.27 44.11 0.10 2.72 16 10 H 0.08 2.13 7.58 -2.39 -0.02 2.12 16 11 N -0.70 -11.64 4.20 -446.76 -1.88 -13.52 16 12 C 0.51 13.47 7.77 87.66 0.68 14.16 16 13 O -0.56 -23.00 15.27 -3.04 -0.05 -23.04 16 14 C -0.07 -1.58 5.83 29.10 0.17 -1.41 16 15 C -0.15 -5.01 4.38 -19.84 -0.09 -5.10 16 16 C -0.06 -2.52 9.69 22.25 0.22 -2.31 16 17 C -0.25 -12.17 9.17 22.39 0.21 -11.96 16 18 C 0.11 6.17 6.65 22.58 0.15 6.32 16 19 O -0.23 -15.10 9.76 -22.72 -0.22 -15.32 16 20 C -0.41 -25.95 9.49 67.92 0.64 -25.30 16 21 H 0.10 5.65 5.20 -2.91 -0.02 5.64 16 22 C -0.02 -1.43 5.49 84.83 0.47 -0.97 16 23 N -0.92 -59.13 13.67 21.61 0.30 -58.84 16 24 Si 1.02 45.61 29.55 68.60 2.03 47.63 16 25 H -0.25 -10.69 7.11 99.48 0.71 -9.98 16 26 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 27 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 28 C -0.21 -9.63 9.99 22.39 0.22 -9.41 16 29 C -0.05 -2.00 9.69 22.25 0.22 -1.79 16 30 H 0.07 0.23 6.79 -2.39 -0.02 0.21 16 31 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.04 0.40 8.14 -2.39 -0.02 0.39 16 33 H 0.12 -0.55 8.14 -2.39 -0.02 -0.57 16 34 H 0.08 0.05 6.96 -2.39 -0.02 0.03 16 35 H 0.08 0.04 8.14 -2.39 -0.02 0.02 16 36 H 0.10 -0.13 8.14 -2.39 -0.02 -0.15 16 37 H 0.40 5.29 8.80 -92.70 -0.82 4.47 16 38 H 0.42 3.12 6.56 -92.71 -0.61 2.52 16 39 H 0.14 1.78 8.08 -2.39 -0.02 1.76 16 40 H 0.12 1.94 8.08 -2.39 -0.02 1.92 16 41 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 42 H 0.11 5.75 5.64 -2.91 -0.02 5.73 16 43 H 0.27 15.95 8.31 -92.70 -0.77 15.18 16 44 H 0.11 5.25 8.06 -2.91 -0.02 5.23 16 45 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -99.85 373.20 2.21 -97.64 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -0.38 Total: 22.64 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: 5.02 Total: -22.49 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -4.13 Total: -84.34 kcal Atomic # 8 Polarization: -60.76 SS G_CDS: -0.32 Total: -61.08 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -99.85 2.21 -97.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194260061.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.067 kcal (2) G-P(sol) polarization free energy of solvation -99.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds