Wall clock time and date at job start Tue Mar 31 2020 18:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47286 * 2 1 4 4 C 1.50709 * 109.46623 * 240.00473 * 2 1 3 5 5 H 1.08003 * 119.99799 * 239.99786 * 4 2 1 6 6 C 1.37876 * 119.99820 * 60.00223 * 4 2 1 7 7 N 1.31509 * 120.00324 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99772 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47251 * 179.97438 * 8 6 4 10 10 H 1.48492 * 109.47216 * 300.00038 * 8 6 4 11 11 H 1.48503 * 109.47039 * 59.99922 * 8 6 4 12 12 N 1.46500 * 109.47123 * 120.00931 * 2 1 3 13 13 C 1.34771 * 119.99550 * 274.99536 * 12 2 1 14 14 O 1.21281 * 120.00216 * 359.97438 * 13 12 2 15 15 C 1.50704 * 119.99792 * 180.02562 * 13 12 2 16 16 O 1.42898 * 109.46952 * 179.97438 * 15 13 12 17 17 C 1.35901 * 117.00164 * 179.97438 * 16 15 13 18 18 C 1.38808 * 120.01725 * 359.72353 * 17 16 15 19 19 C 1.38176 * 120.08414 * 179.74264 * 18 17 16 20 20 C 1.38168 * 120.12233 * 0.55789 * 19 18 17 21 21 C 1.38882 * 120.03846 * 359.69694 * 20 19 18 22 22 N 1.39921 * 120.03860 * 180.02562 * 21 20 19 23 23 C 1.46765 * 124.35115 * 353.96683 * 22 21 20 24 24 C 1.54659 * 105.38189 * 162.85359 * 23 22 21 25 25 C 1.54629 * 101.68443 * 25.76571 * 24 23 22 26 26 C 1.34427 * 124.34923 * 174.26531 * 22 21 20 27 27 O 1.21289 * 124.94087 * 0.38727 * 26 22 21 28 28 C 1.38580 * 120.02421 * 180.02562 * 17 16 15 29 29 H 1.09003 * 109.46806 * 299.98948 * 1 2 3 30 30 H 1.08996 * 109.47228 * 59.99263 * 1 2 3 31 31 H 1.09002 * 109.46902 * 179.97438 * 1 2 3 32 32 H 0.96994 * 120.00397 * 180.02562 * 7 6 4 33 33 H 0.96993 * 120.00015 * 95.00079 * 12 2 1 34 34 H 1.09002 * 109.47125 * 299.99409 * 15 13 12 35 35 H 1.09001 * 109.47235 * 60.00098 * 15 13 12 36 36 H 1.08007 * 119.95949 * 0.02562 * 18 17 16 37 37 H 1.07994 * 119.93414 * 180.25242 * 19 18 17 38 38 H 1.07997 * 119.97619 * 179.72098 * 20 19 18 39 39 H 1.08998 * 110.24176 * 281.98257 * 23 22 21 40 40 H 1.08995 * 110.24606 * 43.98283 * 23 22 21 41 41 H 1.09004 * 111.19407 * 267.59112 * 24 23 22 42 42 H 1.09002 * 110.85506 * 143.79041 * 24 23 22 43 43 H 1.09003 * 110.48487 * 216.30749 * 25 24 23 44 44 H 1.09003 * 110.48406 * 93.66988 * 25 24 23 45 45 H 1.07997 * 120.05988 * 359.97438 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6034 8 14 2.3223 -1.1192 -4.0081 9 1 1.8267 -0.4195 -5.2206 10 1 3.8072 -1.1188 -4.0080 11 1 1.8277 -2.5195 -4.0084 12 7 2.0184 -0.6908 1.1961 13 6 2.1471 -0.0186 2.3570 14 8 1.8592 1.1583 2.4115 15 6 2.6500 -0.7290 3.5873 16 8 2.6986 0.1893 4.6811 17 6 3.1331 -0.2949 5.8743 18 6 3.4996 -1.6287 5.9906 19 6 3.9466 -2.1211 7.2018 20 6 4.0193 -1.2906 8.3036 21 6 3.6489 0.0434 8.1944 22 7 3.7230 0.8845 9.3101 23 6 4.0554 0.4335 10.6666 24 6 4.4455 1.7143 11.4407 25 6 3.6713 2.8008 10.6589 26 6 3.4933 2.2087 9.2783 27 8 3.1882 2.8372 8.2869 28 6 3.2046 0.5411 6.9772 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7081 1.1612 -3.4842 33 1 2.2491 -1.6319 1.1523 34 1 1.9777 -1.5512 3.8324 35 1 3.6494 -1.1208 3.3976 36 1 3.4396 -2.2813 5.1321 37 1 4.2350 -3.1582 7.2885 38 1 4.3647 -1.6791 9.2502 39 1 3.1899 -0.0410 11.1289 40 1 4.8962 -0.2595 10.6382 41 1 5.5201 1.8912 11.3938 42 1 4.1058 1.6613 12.4750 43 1 4.2531 3.7211 10.6072 44 1 2.7023 2.9865 11.1222 45 1 2.9157 1.5780 6.8897 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194655161.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:03 Heat of formation + Delta-G solvation = -72.200482 kcal Electronic energy + Delta-G solvation = -27310.482771 eV Core-core repulsion = 23293.635578 eV Total energy + Delta-G solvation = -4016.847192 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.39642 -40.01636 -38.68815 -37.39110 -36.70914 -34.76438 -33.30769 -32.43588 -30.85361 -29.46567 -29.14936 -28.12773 -27.23820 -25.25037 -23.49863 -23.33187 -21.57725 -21.23189 -20.03456 -19.48040 -18.39472 -17.53809 -17.13293 -16.66725 -16.42481 -16.11683 -15.90205 -15.49797 -15.23670 -14.96725 -14.35980 -14.29154 -14.13884 -13.86451 -13.77428 -13.57079 -13.29240 -13.18654 -12.67903 -12.59184 -12.37196 -12.17562 -11.79114 -11.73527 -11.60867 -11.38844 -11.21187 -11.09203 -10.93832 -10.72141 -10.34666 -10.32450 -10.23450 -9.87219 -9.07617 -9.04219 -8.55886 -8.47881 -8.10236 -7.96170 -6.12218 -4.22181 1.05886 1.31264 2.27663 2.34620 3.00812 3.25509 3.27926 3.31298 3.32746 3.66610 3.78954 3.87742 4.20842 4.24810 4.39205 4.46156 4.68680 4.83790 4.90178 4.93521 4.97346 5.06213 5.13861 5.16508 5.19425 5.25338 5.25694 5.38952 5.40128 5.41912 5.70510 5.88768 6.08767 6.22911 6.37063 6.68407 6.79903 6.82582 6.96397 7.14045 7.37358 7.42651 7.56163 7.68242 7.71406 7.90491 8.14127 8.59870 8.76182 9.06084 9.44945 10.93732 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027580 B = 0.001974 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.991800 B =14184.047625 C =14858.214989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.266 3.734 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.904 3.096 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.705 5.705 13 C 0.502 3.498 14 O -0.530 6.530 15 C 0.039 3.961 16 O -0.282 6.282 17 C 0.165 3.835 18 C -0.236 4.236 19 C -0.052 4.052 20 C -0.201 4.201 21 C 0.201 3.799 22 N -0.561 5.561 23 C 0.096 3.904 24 C -0.131 4.131 25 C -0.153 4.153 26 C 0.511 3.489 27 O -0.498 6.498 28 C -0.191 4.191 29 H 0.016 0.984 30 H 0.091 0.909 31 H 0.027 0.973 32 H 0.266 0.734 33 H 0.390 0.610 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.786 -6.256 30.274 31.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.165 3.835 3 H 0.068 0.932 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.520 5.520 8 Si 0.731 3.269 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.355 5.355 13 C 0.285 3.715 14 O -0.406 6.406 15 C -0.040 4.040 16 O -0.193 6.193 17 C 0.118 3.882 18 C -0.256 4.256 19 C -0.070 4.070 20 C -0.222 4.222 21 C 0.107 3.893 22 N -0.285 5.285 23 C -0.026 4.026 24 C -0.169 4.169 25 C -0.193 4.193 26 C 0.299 3.701 27 O -0.372 6.372 28 C -0.212 4.212 29 H 0.035 0.965 30 H 0.110 0.890 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.222 0.778 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.142 0.858 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.114 0.886 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.243 -4.683 29.555 30.788 hybrid contribution 0.484 -1.368 -0.884 1.699 sum 7.727 -6.051 28.671 30.304 Atomic orbital electron populations 1.22092 0.98320 0.99195 1.01069 1.18793 0.91125 0.94062 0.79540 0.93206 1.21158 1.32680 1.13310 0.90226 0.92044 1.24898 0.94807 0.94967 0.99086 1.69890 1.35640 1.22353 1.24071 0.86476 0.79149 0.79522 0.81741 1.21116 1.20168 1.20169 1.46413 1.65524 1.13600 1.09971 1.19856 0.79730 0.87771 0.84152 1.90721 1.49667 1.15631 1.84590 1.22685 1.02614 0.92563 0.86125 1.86226 1.79990 1.37419 1.15693 1.18836 0.92153 0.91628 0.85618 1.21293 1.09404 0.94934 0.99945 1.20660 0.95826 0.99152 0.91399 1.20579 1.09446 0.92073 1.00090 1.17327 0.96813 0.89671 0.85493 1.45798 1.66369 1.08214 1.08106 1.22297 1.01879 0.98009 0.80407 1.22658 1.01560 0.92888 0.99796 1.22355 1.03705 1.00300 0.92963 1.21175 0.76039 0.81482 0.91359 1.90721 1.45232 1.64304 1.36900 1.20708 1.07806 1.03126 0.89553 0.96537 0.89019 0.95386 0.92448 0.77814 0.89409 0.89344 0.85118 0.85316 0.85776 0.89967 0.89398 0.89507 0.88561 0.87385 0.87219 0.81934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.26 37.16 0.34 -3.41 16 2 C 0.27 6.88 2.56 -69.08 -0.18 6.70 16 3 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 4 C -0.54 -14.22 8.73 -34.44 -0.30 -14.52 16 5 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.09 11.32 55.43 0.63 -24.46 16 8 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 N -0.71 -14.77 5.07 -54.93 -0.28 -15.04 16 13 C 0.50 10.54 7.87 -10.99 -0.09 10.45 16 14 O -0.53 -13.82 16.16 -14.35 -0.23 -14.05 16 15 C 0.04 0.61 5.22 36.01 0.19 0.80 16 16 O -0.28 -5.12 9.67 -39.34 -0.38 -5.50 16 17 C 0.16 2.52 6.68 -39.24 -0.26 2.26 16 18 C -0.24 -2.79 9.04 -39.39 -0.36 -3.14 16 19 C -0.05 -0.50 10.03 -39.63 -0.40 -0.89 16 20 C -0.20 -1.92 9.42 -39.37 -0.37 -2.29 16 21 C 0.20 2.43 6.59 -83.72 -0.55 1.87 16 22 N -0.56 -5.44 3.14 -112.18 -0.35 -5.79 16 23 C 0.10 0.44 6.52 -3.03 -0.02 0.42 16 24 C -0.13 -0.37 7.19 -25.00 -0.18 -0.55 16 25 C -0.15 -0.84 6.86 -26.75 -0.18 -1.02 16 26 C 0.51 5.62 7.92 -10.86 -0.09 5.54 16 27 O -0.50 -7.91 14.81 5.55 0.08 -7.83 16 28 C -0.19 -2.96 9.22 -39.25 -0.36 -3.32 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.39 6.74 8.54 -40.82 -0.35 6.39 16 34 H 0.09 1.09 7.65 -51.93 -0.40 0.69 16 35 H 0.09 1.12 7.67 -51.93 -0.40 0.72 16 36 H 0.13 1.28 6.29 -52.48 -0.33 0.95 16 37 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.12 0.80 6.73 -52.49 -0.35 0.45 16 39 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 40 H 0.09 0.29 7.22 -51.93 -0.38 -0.09 16 41 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.10 0.05 8.14 -51.93 -0.42 -0.37 16 43 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.16 2.94 5.25 -52.49 -0.28 2.66 16 LS Contribution 373.54 15.07 5.63 5.63 Total: -1.00 -36.58 373.54 -8.93 -45.51 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.11 Total: 5.29 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -2.90 Total: 0.58 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.00 Total: -45.29 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.53 Total: -27.38 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.58 -8.93 -45.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194655161.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.689 kcal (2) G-P(sol) polarization free energy of solvation -36.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds