Wall clock time and date at job start Tue Mar 31 2020 18:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47286 * 2 1 4 4 C 1.50709 * 109.46623 * 240.00473 * 2 1 3 5 5 H 1.08003 * 119.99799 * 239.99786 * 4 2 1 6 6 C 1.37876 * 119.99820 * 60.00223 * 4 2 1 7 7 N 1.31509 * 120.00324 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99772 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47251 * 179.97438 * 8 6 4 10 10 H 1.48492 * 109.47216 * 300.00038 * 8 6 4 11 11 H 1.48503 * 109.47039 * 59.99922 * 8 6 4 12 12 N 1.46500 * 109.47123 * 120.00931 * 2 1 3 13 13 C 1.34771 * 119.99550 * 274.99536 * 12 2 1 14 14 O 1.21281 * 120.00216 * 359.97438 * 13 12 2 15 15 C 1.50704 * 119.99792 * 180.02562 * 13 12 2 16 16 O 1.42898 * 109.46952 * 179.97438 * 15 13 12 17 17 C 1.35901 * 117.00164 * 179.97438 * 16 15 13 18 18 C 1.38808 * 120.01725 * 359.72353 * 17 16 15 19 19 C 1.38176 * 120.08414 * 179.74264 * 18 17 16 20 20 C 1.38168 * 120.12233 * 0.55789 * 19 18 17 21 21 C 1.38882 * 120.03846 * 359.69694 * 20 19 18 22 22 N 1.39921 * 120.03860 * 180.02562 * 21 20 19 23 23 C 1.46765 * 124.35115 * 353.96683 * 22 21 20 24 24 C 1.54659 * 105.38189 * 162.85359 * 23 22 21 25 25 C 1.54629 * 101.68443 * 25.76571 * 24 23 22 26 26 C 1.34427 * 124.34923 * 174.26531 * 22 21 20 27 27 O 1.21289 * 124.94087 * 0.38727 * 26 22 21 28 28 C 1.38580 * 120.02421 * 180.02562 * 17 16 15 29 29 H 1.09003 * 109.46806 * 299.98948 * 1 2 3 30 30 H 1.08996 * 109.47228 * 59.99263 * 1 2 3 31 31 H 1.09002 * 109.46902 * 179.97438 * 1 2 3 32 32 H 0.96994 * 120.00397 * 180.02562 * 7 6 4 33 33 H 0.96993 * 120.00015 * 95.00079 * 12 2 1 34 34 H 1.09002 * 109.47125 * 299.99409 * 15 13 12 35 35 H 1.09001 * 109.47235 * 60.00098 * 15 13 12 36 36 H 1.08007 * 119.95949 * 0.02562 * 18 17 16 37 37 H 1.07994 * 119.93414 * 180.25242 * 19 18 17 38 38 H 1.07997 * 119.97619 * 179.72098 * 20 19 18 39 39 H 1.08998 * 110.24176 * 281.98257 * 23 22 21 40 40 H 1.08995 * 110.24606 * 43.98283 * 23 22 21 41 41 H 1.09004 * 111.19407 * 267.59112 * 24 23 22 42 42 H 1.09002 * 110.85506 * 143.79041 * 24 23 22 43 43 H 1.09003 * 110.48487 * 216.30749 * 25 24 23 44 44 H 1.09003 * 110.48406 * 93.66988 * 25 24 23 45 45 H 1.07997 * 120.05988 * 359.97438 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6034 8 14 2.3223 -1.1192 -4.0081 9 1 1.8267 -0.4195 -5.2206 10 1 3.8072 -1.1188 -4.0080 11 1 1.8277 -2.5195 -4.0084 12 7 2.0184 -0.6908 1.1961 13 6 2.1471 -0.0186 2.3570 14 8 1.8592 1.1583 2.4115 15 6 2.6500 -0.7290 3.5873 16 8 2.6986 0.1893 4.6811 17 6 3.1331 -0.2949 5.8743 18 6 3.4996 -1.6287 5.9906 19 6 3.9466 -2.1211 7.2018 20 6 4.0193 -1.2906 8.3036 21 6 3.6489 0.0434 8.1944 22 7 3.7230 0.8845 9.3101 23 6 4.0554 0.4335 10.6666 24 6 4.4455 1.7143 11.4407 25 6 3.6713 2.8008 10.6589 26 6 3.4933 2.2087 9.2783 27 8 3.1882 2.8372 8.2869 28 6 3.2046 0.5411 6.9772 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7081 1.1612 -3.4842 33 1 2.2491 -1.6319 1.1523 34 1 1.9777 -1.5512 3.8324 35 1 3.6494 -1.1208 3.3976 36 1 3.4396 -2.2813 5.1321 37 1 4.2350 -3.1582 7.2885 38 1 4.3647 -1.6791 9.2502 39 1 3.1899 -0.0410 11.1289 40 1 4.8962 -0.2595 10.6382 41 1 5.5201 1.8912 11.3938 42 1 4.1058 1.6613 12.4750 43 1 4.2531 3.7211 10.6072 44 1 2.7023 2.9865 11.1222 45 1 2.9157 1.5780 6.8897 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194655161.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:02 Heat of formation + Delta-G solvation = -97.982716 kcal Electronic energy + Delta-G solvation = -27311.600772 eV Core-core repulsion = 23293.635578 eV Total energy + Delta-G solvation = -4017.965194 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.15431 -41.23006 -40.19114 -38.46301 -37.53280 -36.72865 -34.41328 -33.93715 -32.04071 -31.10330 -29.91720 -28.86539 -28.45647 -27.35694 -24.40162 -24.03392 -23.12065 -22.07135 -21.41790 -20.84758 -19.34277 -19.09937 -17.91349 -17.72229 -17.49960 -17.37796 -17.20651 -16.96674 -16.57123 -16.24753 -15.73309 -15.44201 -15.03118 -14.90334 -14.69458 -14.50922 -14.39527 -14.34753 -14.08329 -13.77568 -13.54328 -13.42992 -13.03649 -12.90539 -12.77947 -12.74518 -12.38451 -12.33326 -12.27875 -12.25944 -12.15845 -11.88175 -11.15788 -11.05408 -10.86308 -10.72309 -10.60500 -9.87502 -9.47122 -8.93927 -8.18709 -6.37358 0.16897 0.40200 1.44344 1.47811 1.48178 1.52976 1.56693 1.62037 1.89006 2.40116 2.78594 2.83538 3.11670 3.28421 3.54664 3.68522 3.94241 3.98263 4.00428 4.10360 4.10515 4.16705 4.19078 4.29474 4.50493 4.59679 4.62351 4.70782 4.78988 4.86799 4.87875 5.04559 5.07901 5.13200 5.18541 5.28029 5.37340 5.38776 5.47290 5.54674 5.62901 5.81939 5.88417 6.05054 6.05267 6.37080 6.69145 6.84973 6.92762 7.28577 7.45454 8.87771 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027580 B = 0.001974 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.991800 B =14184.047625 C =14858.214989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.270 3.730 3 H -0.006 1.006 4 C -0.547 4.547 5 H 0.080 0.920 6 C 0.010 3.990 7 N -0.919 5.919 8 Si 0.978 3.022 9 H -0.288 1.288 10 H -0.270 1.270 11 H -0.261 1.261 12 N -0.694 5.694 13 C 0.496 3.504 14 O -0.593 6.593 15 C 0.052 3.948 16 O -0.328 6.328 17 C 0.135 3.865 18 C -0.235 4.235 19 C -0.042 4.042 20 C -0.185 4.185 21 C 0.191 3.809 22 N -0.563 5.563 23 C 0.086 3.914 24 C -0.116 4.116 25 C -0.146 4.146 26 C 0.489 3.511 27 O -0.566 6.566 28 C -0.233 4.233 29 H 0.008 0.992 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.266 0.734 33 H 0.412 0.588 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.155 0.845 37 H 0.174 0.826 38 H 0.167 0.833 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.094 0.906 42 H 0.130 0.870 43 H 0.112 0.888 44 H 0.125 0.875 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.815 -10.900 33.085 36.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.167 3.833 3 H 0.012 0.988 4 C -0.585 4.585 5 H 0.098 0.902 6 C -0.190 4.190 7 N -0.558 5.558 8 Si 0.802 3.198 9 H -0.214 1.214 10 H -0.195 1.195 11 H -0.185 1.185 12 N -0.345 5.345 13 C 0.282 3.718 14 O -0.474 6.474 15 C -0.025 4.025 16 O -0.241 6.241 17 C 0.089 3.911 18 C -0.254 4.254 19 C -0.060 4.060 20 C -0.205 4.205 21 C 0.096 3.904 22 N -0.286 5.286 23 C -0.034 4.034 24 C -0.153 4.153 25 C -0.186 4.186 26 C 0.281 3.719 27 O -0.445 6.445 28 C -0.254 4.254 29 H 0.027 0.973 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.248 0.752 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.173 0.827 37 H 0.191 0.809 38 H 0.184 0.816 39 H 0.119 0.881 40 H 0.128 0.872 41 H 0.113 0.887 42 H 0.148 0.852 43 H 0.130 0.870 44 H 0.143 0.857 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.305 -9.412 32.442 35.038 hybrid contribution -0.131 0.098 -1.629 1.637 sum 9.173 -9.314 30.813 33.472 Atomic orbital electron populations 1.21917 0.98174 0.99794 0.99495 1.18404 0.91263 0.91904 0.81759 0.98768 1.21502 1.32816 1.13745 0.90399 0.90210 1.25890 0.94856 0.95608 1.02603 1.70061 1.36923 1.24007 1.24767 0.85304 0.78601 0.78705 0.77150 1.21391 1.19511 1.18511 1.46076 1.65115 1.14463 1.08870 1.20865 0.78247 0.87171 0.85563 1.90693 1.52252 1.18695 1.85715 1.22636 1.05066 0.91738 0.83093 1.86146 1.81303 1.39420 1.17253 1.19064 0.94279 0.93454 0.84320 1.21589 1.08651 0.93179 1.01993 1.21227 0.93625 1.01033 0.90101 1.21073 1.07124 0.90367 1.01960 1.17579 0.96455 0.91281 0.85095 1.46158 1.65230 1.07761 1.09438 1.22763 1.03553 0.99366 0.77710 1.22731 1.01667 0.90270 1.00672 1.22436 1.05203 1.01202 0.89772 1.22342 0.74744 0.82186 0.92650 1.90692 1.48202 1.65892 1.39691 1.20658 1.10863 1.01784 0.92086 0.97330 0.91364 0.93452 0.92519 0.75208 0.85491 0.85763 0.82712 0.80905 0.81596 0.88089 0.87188 0.88689 0.85166 0.86974 0.85693 0.86269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.09 9.26 71.98 0.67 -6.43 16 2 C 0.27 14.46 2.56 44.25 0.11 14.58 16 3 H -0.01 -0.36 7.58 -2.39 -0.02 -0.38 16 4 C -0.55 -29.08 8.73 25.60 0.22 -28.86 16 5 H 0.08 3.86 7.74 -2.91 -0.02 3.84 16 6 C 0.01 0.56 5.30 84.66 0.45 1.01 16 7 N -0.92 -53.90 11.32 21.45 0.24 -53.66 16 8 Si 0.98 42.15 29.54 68.60 2.03 44.17 16 9 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 10 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 12 N -0.69 -29.29 5.07 -446.08 -2.26 -31.56 16 13 C 0.50 21.48 7.87 87.66 0.69 22.17 16 14 O -0.59 -33.27 16.16 16.00 0.26 -33.01 16 15 C 0.05 1.60 5.22 71.24 0.37 1.97 16 16 O -0.33 -12.60 9.67 -73.40 -0.71 -13.31 16 17 C 0.13 4.25 6.68 22.49 0.15 4.40 16 18 C -0.23 -4.94 9.04 22.39 0.20 -4.74 16 19 C -0.04 -0.61 10.03 22.24 0.22 -0.39 16 20 C -0.18 -2.84 9.42 22.41 0.21 -2.63 16 21 C 0.19 4.55 6.59 38.14 0.25 4.80 16 22 N -0.56 -10.61 3.14 -627.42 -1.97 -12.58 16 23 C 0.09 0.49 6.52 86.89 0.57 1.05 16 24 C -0.12 -0.24 7.19 31.71 0.23 -0.01 16 25 C -0.15 -1.47 6.86 30.58 0.21 -1.26 16 26 C 0.49 11.52 7.92 87.89 0.70 12.22 16 27 O -0.57 -20.54 14.81 -3.06 -0.05 -20.58 16 28 C -0.23 -7.83 9.22 22.49 0.21 -7.62 16 29 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.07 3.91 6.07 -2.39 -0.01 3.89 16 31 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 33 H 0.41 13.58 8.54 -92.71 -0.79 12.78 16 34 H 0.13 2.84 7.65 -2.39 -0.02 2.82 16 35 H 0.12 2.86 7.67 -2.39 -0.02 2.84 16 36 H 0.16 2.39 6.29 -2.91 -0.02 2.37 16 37 H 0.17 1.09 8.06 -2.91 -0.02 1.06 16 38 H 0.17 1.13 6.73 -2.91 -0.02 1.11 16 39 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 40 H 0.11 0.17 7.22 -2.39 -0.02 0.15 16 41 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 42 H 0.13 -0.52 8.14 -2.39 -0.02 -0.54 16 43 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.12 5.04 5.25 -2.91 -0.02 5.02 16 Total: -1.00 -91.93 373.54 3.24 -88.69 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 0.24 Total: 21.57 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 5.46 Total: 10.26 kcal Atomic # 7 Polarization: -93.80 SS G_CDS: -3.99 Total: -97.79 kcal Atomic # 8 Polarization: -66.41 SS G_CDS: -0.50 Total: -66.90 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -91.93 3.24 -88.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194655161.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.293 kcal (2) G-P(sol) polarization free energy of solvation -91.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds