Wall clock time and date at job start Tue Mar 31 2020 18:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35962 * 117.00230 * 2 1 4 4 C 1.38721 * 119.98702 * 359.72593 * 3 2 1 5 5 C 1.38092 * 120.01613 * 179.72489 * 4 3 2 6 6 C 1.38845 * 119.98036 * 0.55169 * 5 4 3 7 7 N 1.40117 * 120.00956 * 179.74885 * 6 5 4 8 8 C 1.46758 * 124.35041 * 353.95995 * 7 6 5 9 9 C 1.54663 * 105.38025 * 162.85641 * 8 7 6 10 10 H 1.08997 * 111.19280 * 267.59375 * 9 8 7 11 11 C 1.50700 * 110.85037 * 143.79455 * 9 8 7 12 12 O 1.21285 * 120.00436 * 6.33188 * 11 9 8 13 13 N 1.34781 * 119.99832 * 186.33366 * 11 9 8 14 14 C 1.46497 * 119.99957 * 179.97438 * 13 11 9 15 15 H 1.09005 * 109.47460 * 34.99777 * 14 13 11 16 16 C 1.53000 * 109.47342 * 274.99716 * 14 13 11 17 17 C 1.50702 * 109.47267 * 154.99580 * 14 13 11 18 18 H 1.07998 * 119.99440 * 0.02562 * 17 14 13 19 19 C 1.37870 * 120.00249 * 179.97438 * 17 14 13 20 20 N 1.31514 * 119.99942 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 120.00188 * 180.02562 * 19 17 14 22 22 H 1.48506 * 109.46977 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47722 * 119.99850 * 21 19 17 24 24 H 1.48502 * 109.46743 * 240.00254 * 21 19 17 25 25 C 1.54624 * 101.68406 * 25.77204 * 9 8 7 26 26 C 1.34421 * 124.34751 * 174.26452 * 7 6 5 27 27 O 1.21291 * 124.93890 * 0.43016 * 26 7 6 28 28 C 1.38839 * 119.97440 * 359.72459 * 6 5 4 29 29 C 1.38088 * 119.98345 * 359.97438 * 28 6 5 30 30 H 1.08998 * 109.47210 * 300.00273 * 1 2 3 31 31 H 1.09006 * 109.47172 * 59.99882 * 1 2 3 32 32 H 1.09001 * 109.47297 * 180.02562 * 1 2 3 33 33 H 1.08003 * 119.99175 * 359.97438 * 4 3 2 34 34 H 1.07999 * 120.00896 * 180.24691 * 5 4 3 35 35 H 1.08996 * 110.25023 * 281.98897 * 8 7 6 36 36 H 1.09006 * 110.24797 * 43.98821 * 8 7 6 37 37 H 0.97000 * 119.99777 * 359.97438 * 13 11 9 38 38 H 1.08998 * 109.46748 * 60.00123 * 16 14 13 39 39 H 1.08998 * 109.47144 * 179.97438 * 16 14 13 40 40 H 1.08995 * 109.46815 * 300.00517 * 16 14 13 41 41 H 0.97006 * 120.00098 * 179.97438 * 20 19 17 42 42 H 1.09003 * 110.48327 * 216.31049 * 25 9 8 43 43 H 1.08996 * 110.60167 * 93.71582 * 25 9 8 44 44 H 1.07997 * 120.00955 * 180.02562 * 28 6 5 45 45 H 1.08007 * 119.98894 * 180.02562 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2906 2.3747 -0.0057 5 6 1.9169 3.6054 0.0000 6 6 3.3034 3.6783 -0.0001 7 7 3.9396 4.9267 0.0004 8 6 3.2419 6.2116 -0.1265 9 6 4.2523 7.2768 0.3600 10 1 4.1283 7.4808 1.4235 11 6 4.1272 8.5430 -0.4474 12 8 3.2356 8.6576 -1.2616 13 7 5.0062 9.5483 -0.2647 14 6 4.8850 10.7791 -1.0500 15 1 3.8311 10.9980 -1.2222 16 6 5.5945 10.5988 -2.3935 17 6 5.5184 11.9202 -0.2965 18 1 5.9668 11.7459 0.6704 19 6 5.5264 13.1864 -0.8420 20 7 4.9817 13.3983 -2.0201 21 14 6.3122 14.6007 0.0917 22 1 6.8505 14.1028 1.3831 23 1 7.4171 15.1748 -0.7173 24 1 5.2929 15.6488 0.3520 25 6 5.6029 6.5761 0.0847 26 6 5.2678 5.1011 0.1113 27 8 6.0795 4.2060 0.2168 28 6 4.0593 2.5136 -0.0001 29 6 3.4316 1.2836 0.0004 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 0.2121 2.3178 -0.0106 34 1 1.3284 4.5109 -0.0005 35 1 2.9705 6.3924 -1.1665 36 1 2.3524 6.2217 0.5035 37 1 5.7191 9.4568 0.3867 38 1 5.1363 9.7735 -2.9385 39 1 5.5039 11.5144 -2.9779 40 1 6.6483 10.3799 -2.2213 41 1 4.9870 14.2892 -2.4038 42 1 6.3240 6.8175 0.8656 43 1 5.9907 6.8615 -0.8931 44 1 5.1378 2.5697 0.0003 45 1 4.0195 0.3776 0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194711280.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:12 Heat of formation + Delta-G solvation = -95.780834 kcal Electronic energy + Delta-G solvation = -27758.210468 eV Core-core repulsion = 23740.340755 eV Total energy + Delta-G solvation = -4017.869713 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.37577 -40.93275 -40.29171 -38.40273 -37.49013 -36.61398 -34.46338 -33.77540 -32.17625 -30.95575 -29.68255 -28.90604 -27.92247 -27.30598 -25.30482 -23.75198 -23.29329 -22.30228 -20.95966 -20.86998 -19.24207 -19.08484 -18.54864 -18.04345 -17.21294 -17.13647 -16.69184 -16.58703 -16.43008 -16.04266 -15.84580 -15.52767 -15.00641 -14.77286 -14.71075 -14.63887 -14.37905 -14.24394 -14.19880 -13.79092 -13.57595 -13.51163 -12.99861 -12.90166 -12.85355 -12.72891 -12.54935 -12.44545 -12.24814 -12.17480 -12.09413 -11.89484 -11.05489 -11.00803 -10.79690 -10.64404 -10.52250 -10.08354 -9.73388 -8.62272 -8.15267 -6.31741 0.21116 0.27154 1.43172 1.46134 1.48244 1.58916 1.63855 1.75223 2.33917 2.40855 2.55169 2.74806 3.09277 3.16022 3.26495 3.73439 3.78491 3.84157 3.91165 4.16390 4.22072 4.26515 4.39567 4.43329 4.45520 4.49300 4.59573 4.70362 4.76560 4.80462 4.87028 4.92362 4.96390 4.98763 5.13337 5.13870 5.26832 5.41148 5.47505 5.63830 5.72561 5.83146 5.92812 5.95811 6.13690 6.43245 6.76939 6.87834 6.95963 7.35352 7.54963 8.90836 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030176 B = 0.002115 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.657656 B =13236.789511 C =13721.509757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.095 3.905 4 C -0.175 4.175 5 C -0.115 4.115 6 C 0.112 3.888 7 N -0.554 5.554 8 C 0.114 3.886 9 C -0.106 4.106 10 H 0.154 0.846 11 C 0.514 3.486 12 O -0.590 6.590 13 N -0.698 5.698 14 C 0.270 3.730 15 H 0.003 0.997 16 C -0.136 4.136 17 C -0.542 4.542 18 H 0.076 0.924 19 C 0.013 3.987 20 N -0.917 5.917 21 Si 0.969 3.031 22 H -0.259 1.259 23 H -0.282 1.282 24 H -0.286 1.286 25 C -0.135 4.135 26 C 0.516 3.484 27 O -0.544 6.544 28 C -0.131 4.131 29 C -0.133 4.133 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.118 0.882 33 H 0.160 0.840 34 H 0.150 0.850 35 H 0.083 0.917 36 H 0.115 0.885 37 H 0.408 0.592 38 H 0.014 0.986 39 H 0.064 0.936 40 H 0.040 0.960 41 H 0.264 0.736 42 H 0.144 0.856 43 H 0.110 0.890 44 H 0.145 0.855 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.595 -21.749 7.567 23.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.050 3.950 4 C -0.194 4.194 5 C -0.135 4.135 6 C 0.019 3.981 7 N -0.277 5.277 8 C -0.008 4.008 9 C -0.127 4.127 10 H 0.171 0.829 11 C 0.300 3.700 12 O -0.471 6.471 13 N -0.346 5.346 14 C 0.167 3.833 15 H 0.021 0.979 16 C -0.194 4.194 17 C -0.581 4.581 18 H 0.094 0.906 19 C -0.187 4.187 20 N -0.556 5.556 21 Si 0.794 3.206 22 H -0.182 1.182 23 H -0.208 1.208 24 H -0.212 1.212 25 C -0.175 4.175 26 C 0.306 3.694 27 O -0.422 6.422 28 C -0.151 4.151 29 C -0.152 4.152 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.136 0.864 33 H 0.177 0.823 34 H 0.167 0.833 35 H 0.102 0.898 36 H 0.133 0.867 37 H 0.243 0.757 38 H 0.033 0.967 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.162 0.838 43 H 0.129 0.871 44 H 0.163 0.837 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.744 -22.151 6.919 24.167 hybrid contribution 0.371 1.132 0.127 1.198 sum -6.374 -21.019 7.046 23.067 Atomic orbital electron populations 1.23353 0.76464 1.05586 1.02327 1.86058 1.23432 1.26503 1.88945 1.19126 0.92296 0.84987 0.98620 1.21316 1.01354 0.90772 1.05978 1.20869 0.91501 0.99270 1.01840 1.17923 0.92580 0.83798 1.03817 1.45881 1.07771 1.05771 1.68267 1.22205 0.95849 0.78680 1.04050 1.22223 0.95864 0.91349 1.03289 0.82872 1.20546 0.81392 0.85139 0.82909 1.90677 1.36051 1.82109 1.38308 1.46221 1.31063 1.16045 1.41321 1.18346 0.95050 0.81090 0.88828 0.97917 1.21912 0.98574 0.99856 0.99106 1.21591 1.38402 0.93161 1.04898 0.90591 1.25764 0.95669 1.01489 0.95740 1.70055 1.45104 1.22711 1.17710 0.85341 0.77789 0.78531 0.78923 1.18224 1.20839 1.21215 1.22376 0.98085 0.89638 1.07407 1.21322 0.81382 0.92283 0.74390 1.90603 1.52628 1.48461 1.50545 1.21397 1.01781 0.90497 1.01461 1.20447 0.91993 0.98093 1.04713 0.91553 0.91731 0.86412 0.82293 0.83280 0.89837 0.86693 0.75653 0.96721 0.91755 0.94045 0.92684 0.83819 0.87148 0.83744 0.84136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -6.11 10.50 -93.13 -0.98 -7.09 16 3 C 0.10 1.94 6.69 22.50 0.15 2.09 16 4 C -0.18 -3.03 9.03 22.35 0.20 -2.83 16 5 C -0.11 -2.21 9.41 22.38 0.21 -2.00 16 6 C 0.11 2.69 6.60 38.11 0.25 2.94 16 7 N -0.55 -13.07 3.14 -627.23 -1.97 -15.04 16 8 C 0.11 2.43 5.82 86.90 0.51 2.94 16 9 C -0.11 -2.23 3.56 -10.42 -0.04 -2.27 16 10 H 0.15 2.27 8.14 -2.39 -0.02 2.25 16 11 C 0.51 16.88 7.04 87.66 0.62 17.49 16 12 O -0.59 -24.82 15.23 -3.05 -0.05 -24.86 16 13 N -0.70 -24.85 5.02 -446.08 -2.24 -27.09 16 14 C 0.27 12.92 2.56 44.25 0.11 13.04 16 15 H 0.00 0.17 7.58 -2.38 -0.02 0.15 16 16 C -0.14 -6.46 9.26 71.98 0.67 -5.80 16 17 C -0.54 -26.89 8.73 25.60 0.22 -26.66 16 18 H 0.08 3.48 7.74 -2.91 -0.02 3.46 16 19 C 0.01 0.69 5.30 84.65 0.45 1.14 16 20 N -0.92 -50.84 11.32 21.44 0.24 -50.60 16 21 Si 0.97 40.46 29.54 68.60 2.03 42.48 16 22 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 23 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 25 C -0.14 -2.74 6.36 30.59 0.19 -2.54 16 26 C 0.52 13.17 7.92 87.90 0.70 13.86 16 27 O -0.54 -16.99 14.81 -3.06 -0.05 -17.03 16 28 C -0.13 -3.35 9.28 22.38 0.21 -3.14 16 29 C -0.13 -3.00 9.98 22.35 0.22 -2.78 16 30 H 0.07 0.48 7.67 -2.39 -0.02 0.46 16 31 H 0.06 0.49 7.65 -2.38 -0.02 0.47 16 32 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.16 1.78 6.29 -2.91 -0.02 1.76 16 34 H 0.15 2.27 6.74 -2.91 -0.02 2.25 16 35 H 0.08 2.14 7.07 -2.39 -0.02 2.13 16 36 H 0.11 1.89 7.23 -2.38 -0.02 1.88 16 37 H 0.41 11.72 8.54 -92.71 -0.79 10.92 16 38 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.06 3.42 6.07 -2.39 -0.01 3.41 16 40 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.26 13.90 8.31 -92.70 -0.77 13.13 16 42 H 0.14 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.11 2.44 7.89 -2.39 -0.02 2.42 16 44 H 0.15 4.16 5.25 -2.91 -0.02 4.14 16 45 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -70.49 371.02 3.02 -67.47 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.24 Total: 25.02 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 5.79 Total: 6.75 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: -3.97 Total: -92.74 kcal Atomic # 8 Polarization: -47.92 SS G_CDS: -1.07 Total: -48.99 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.48 kcal Total: -70.49 3.02 -67.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194711280.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.307 kcal (2) G-P(sol) polarization free energy of solvation -70.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds