Wall clock time and date at job start Tue Mar 31 2020 18:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35975 * 116.99694 * 2 1 4 4 C 1.38719 * 119.98113 * 179.97438 * 3 2 1 5 5 C 1.38087 * 120.01330 * 180.02562 * 4 3 2 6 6 C 1.38848 * 119.98681 * 359.97438 * 5 4 3 7 7 N 1.40112 * 120.01410 * 179.97438 * 6 5 4 8 8 C 1.46765 * 124.35283 * 354.27378 * 7 6 5 9 9 C 1.54479 * 105.47203 * 163.00562 * 8 7 6 10 10 H 1.09000 * 110.96506 * 143.57188 * 9 8 7 11 11 C 1.50697 * 110.96718 * 267.29697 * 9 8 7 12 12 O 1.21275 * 120.00483 * 0.02562 * 11 9 8 13 13 N 1.34781 * 119.99737 * 179.72707 * 11 9 8 14 14 C 1.46499 * 120.00038 * 180.27945 * 13 11 9 15 15 H 1.08998 * 109.46884 * 324.99516 * 14 13 11 16 16 C 1.53001 * 109.47360 * 84.99822 * 14 13 11 17 17 C 1.50701 * 109.47117 * 204.99761 * 14 13 11 18 18 H 1.08004 * 119.99778 * 0.02562 * 17 14 13 19 19 C 1.37871 * 119.99961 * 179.97438 * 17 14 13 20 20 N 1.31513 * 120.00199 * 0.02562 * 19 17 14 21 21 Si 1.86804 * 119.99804 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.47398 * 90.00006 * 21 19 17 23 23 H 1.48509 * 109.47072 * 210.00377 * 21 19 17 24 24 H 1.48500 * 109.47134 * 329.99453 * 21 19 17 25 25 C 1.54621 * 101.76332 * 25.41940 * 9 8 7 26 26 C 1.34419 * 124.34816 * 174.30324 * 7 6 5 27 27 O 1.21298 * 124.94023 * 0.38426 * 26 7 6 28 28 C 1.38841 * 119.96554 * 0.25606 * 6 5 4 29 29 C 1.38088 * 119.98593 * 359.51137 * 28 6 5 30 30 H 1.08996 * 109.47445 * 300.00013 * 1 2 3 31 31 H 1.09002 * 109.46909 * 59.99917 * 1 2 3 32 32 H 1.09003 * 109.47302 * 179.97438 * 1 2 3 33 33 H 1.08002 * 119.99612 * 0.03068 * 4 3 2 34 34 H 1.08008 * 120.00628 * 179.97438 * 5 4 3 35 35 H 1.09006 * 110.24098 * 44.00786 * 8 7 6 36 36 H 1.08997 * 110.24629 * 282.01007 * 8 7 6 37 37 H 0.97004 * 120.00067 * 0.27170 * 13 11 9 38 38 H 1.09001 * 109.46662 * 60.00160 * 16 14 13 39 39 H 1.08997 * 109.47331 * 180.02562 * 16 14 13 40 40 H 1.09000 * 109.46648 * 300.00049 * 16 14 13 41 41 H 0.97000 * 119.99810 * 179.97438 * 20 19 17 42 42 H 1.09000 * 110.48808 * 93.88172 * 25 9 8 43 43 H 1.09011 * 110.48386 * 216.52044 * 25 9 8 44 44 H 1.08006 * 120.00027 * 179.74344 * 28 6 5 45 45 H 1.08004 * 119.98767 * 180.20732 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4316 1.2838 0.0005 5 6 4.0591 2.5138 0.0011 6 6 3.3032 3.6785 0.0005 7 7 3.9393 4.9269 0.0016 8 6 5.3894 5.1174 0.1242 9 6 5.6572 6.5616 -0.3542 10 1 6.4509 7.0256 0.2313 11 6 5.9881 6.5900 -1.8242 12 8 6.0142 5.5577 -2.4600 13 7 6.2492 7.7635 -2.4335 14 6 6.5649 7.7919 -3.8638 15 1 7.1323 6.8997 -4.1284 16 6 5.2663 7.8289 -4.6721 17 6 7.3842 9.0183 -4.1732 18 1 7.6442 9.7074 -3.3832 19 6 7.8028 9.2600 -5.4644 20 7 7.4867 8.4206 -6.4262 21 14 8.8190 10.7799 -5.8477 22 1 10.2620 10.4598 -5.7041 23 1 8.5457 11.2201 -7.2394 24 1 8.4571 11.8682 -4.9044 25 6 4.2961 7.2420 -0.0800 26 6 3.2999 6.1041 -0.1089 27 8 2.0987 6.2348 -0.2163 28 6 1.9167 3.6054 0.0048 29 6 1.2905 2.3747 -0.0006 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 4.0195 0.3778 0.0005 34 1 5.1377 2.5699 0.0019 35 1 5.9182 4.4057 -0.5099 36 1 5.6987 5.0006 1.1629 37 1 6.2280 8.5894 -1.9251 38 1 4.6990 8.7212 -4.4075 39 1 5.5012 7.8496 -5.7363 40 1 4.6737 6.9419 -4.4483 41 1 7.7809 8.5909 -7.3346 42 1 4.2996 7.7213 0.8989 43 1 4.0686 7.9682 -0.8606 44 1 1.3282 4.5110 0.0086 45 1 0.2120 2.3178 -0.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194711297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:17 Heat of formation + Delta-G solvation = -74.289030 kcal Electronic energy + Delta-G solvation = -28282.794937 eV Core-core repulsion = 24265.857179 eV Total energy + Delta-G solvation = -4016.937759 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.34527 -39.97048 -38.82439 -37.43922 -36.28401 -34.83698 -33.09179 -32.28005 -31.19808 -29.38990 -28.61062 -27.85074 -27.18240 -25.31011 -23.95388 -23.14949 -21.99664 -20.73399 -19.88374 -19.43617 -18.30149 -17.80852 -17.58109 -16.37330 -16.29923 -15.87586 -15.48314 -15.31718 -15.28055 -14.63136 -14.46345 -14.22895 -14.08004 -13.87751 -13.54999 -13.38865 -13.22081 -12.99407 -12.69094 -12.50311 -12.34547 -12.07175 -11.86418 -11.69819 -11.58447 -11.41486 -11.12282 -11.10782 -11.01427 -10.78668 -10.35926 -10.28194 -9.84583 -9.67023 -9.18394 -9.11531 -9.10104 -8.60489 -8.02812 -7.61970 -6.16906 -4.26899 1.19078 1.28095 2.49450 2.74836 3.12896 3.15824 3.21432 3.28301 3.29794 3.73772 3.80305 4.09516 4.25632 4.32272 4.66985 4.72086 4.76860 4.92449 4.94140 5.02237 5.12103 5.15837 5.23303 5.24296 5.29372 5.35823 5.46177 5.49519 5.65462 5.68840 5.79042 5.93799 6.14692 6.29959 6.37586 6.77137 6.79455 6.91367 7.01596 7.09282 7.27514 7.35647 7.47523 7.62957 7.84640 7.98063 8.09431 8.54118 8.70234 8.98508 9.40689 10.89011 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021534 B = 0.002470 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.930812 B =11333.526979 C =11718.276661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.096 3.904 4 C -0.123 4.123 5 C -0.113 4.113 6 C 0.139 3.861 7 N -0.549 5.549 8 C 0.110 3.890 9 C -0.128 4.128 10 H 0.126 0.874 11 C 0.505 3.495 12 O -0.545 6.545 13 N -0.703 5.703 14 C 0.265 3.735 15 H 0.049 0.951 16 C -0.147 4.147 17 C -0.535 4.535 18 H 0.062 0.938 19 C 0.066 3.934 20 N -0.882 5.882 21 Si 0.902 3.098 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.273 1.273 25 C -0.143 4.143 26 C 0.520 3.480 27 O -0.515 6.515 28 C -0.118 4.118 29 C -0.179 4.179 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.097 0.903 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.390 0.610 38 H 0.027 0.973 39 H 0.091 0.909 40 H 0.013 0.987 41 H 0.265 0.735 42 H 0.118 0.882 43 H 0.114 0.886 44 H 0.157 0.843 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.563 -9.707 17.212 21.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.051 3.949 4 C -0.142 4.142 5 C -0.134 4.134 6 C 0.045 3.955 7 N -0.273 5.273 8 C -0.012 4.012 9 C -0.150 4.150 10 H 0.144 0.856 11 C 0.288 3.712 12 O -0.423 6.423 13 N -0.351 5.351 14 C 0.164 3.836 15 H 0.067 0.933 16 C -0.206 4.206 17 C -0.574 4.574 18 H 0.080 0.920 19 C -0.137 4.137 20 N -0.520 5.520 21 Si 0.730 3.270 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.198 1.198 25 C -0.183 4.183 26 C 0.310 3.690 27 O -0.392 6.392 28 C -0.138 4.138 29 C -0.198 4.198 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.116 0.884 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.124 0.876 36 H 0.104 0.896 37 H 0.222 0.778 38 H 0.046 0.954 39 H 0.109 0.891 40 H 0.032 0.968 41 H 0.075 0.925 42 H 0.136 0.864 43 H 0.132 0.868 44 H 0.174 0.826 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.059 -10.565 16.442 21.541 hybrid contribution 0.393 1.392 -0.135 1.452 sum -8.666 -9.174 16.307 20.620 Atomic orbital electron populations 1.23021 0.78670 1.03689 1.01348 1.86054 1.21141 1.26938 1.89259 1.18977 0.92343 0.84121 0.99469 1.20165 0.91271 0.97917 1.04847 1.20636 0.99979 0.90101 1.02656 1.17671 0.91704 0.83913 1.02164 1.45672 1.08628 1.04468 1.68494 1.22182 0.79525 0.97428 1.02103 1.22406 0.98917 0.96526 0.97106 0.85610 1.19992 0.78264 0.84971 0.87939 1.90686 1.52658 1.32852 1.66104 1.46507 1.68037 1.07193 1.13323 1.18774 0.93121 0.98321 0.73427 0.93306 1.22080 0.97179 0.96870 1.04475 1.21190 1.33972 1.07897 0.94298 0.92004 1.24896 0.95941 0.96880 0.96011 1.69902 1.44858 1.36059 1.01151 0.86437 0.80306 0.82551 0.77722 1.20543 1.21064 1.19830 1.22359 0.92410 0.97435 1.06105 1.20968 0.88620 0.84632 0.74829 1.90604 1.14372 1.85211 1.48991 1.21425 0.92896 0.99367 1.00158 1.21103 0.99974 0.91625 1.07126 0.92790 0.92683 0.88419 0.84787 0.84706 0.87626 0.89573 0.77768 0.95405 0.89079 0.96755 0.92506 0.86408 0.86770 0.82558 0.85241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.61 10.50 -19.66 -0.21 -3.81 16 3 C 0.10 1.19 6.69 -39.23 -0.26 0.93 16 4 C -0.12 -1.47 9.98 -39.46 -0.39 -1.86 16 5 C -0.11 -1.41 9.41 -39.41 -0.37 -1.78 16 6 C 0.14 1.98 6.60 -83.62 -0.55 1.43 16 7 N -0.55 -7.61 3.14 -112.23 -0.35 -7.96 16 8 C 0.11 1.25 5.84 -3.12 -0.02 1.23 16 9 C -0.13 -1.48 3.54 -90.15 -0.32 -1.80 16 10 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 11 C 0.51 8.99 7.05 -10.98 -0.08 8.92 16 12 O -0.54 -12.08 15.19 5.56 0.08 -12.00 16 13 N -0.70 -13.43 4.99 -54.93 -0.27 -13.71 16 14 C 0.26 6.50 2.56 -69.08 -0.18 6.33 16 15 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 16 C -0.15 -3.65 9.26 37.16 0.34 -3.30 16 17 C -0.54 -13.69 8.73 -34.44 -0.30 -13.99 16 18 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 19 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 20 N -0.88 -24.53 11.32 55.43 0.63 -23.90 16 21 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 25 C -0.14 -1.60 6.40 -26.75 -0.17 -1.77 16 26 C 0.52 7.69 7.92 -10.86 -0.09 7.60 16 27 O -0.52 -9.00 14.82 5.54 0.08 -8.92 16 28 C -0.12 -1.69 9.28 -39.41 -0.37 -2.06 16 29 C -0.18 -2.21 9.03 -39.46 -0.36 -2.57 16 30 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 31 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 32 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.14 1.44 6.74 -52.48 -0.35 1.08 16 35 H 0.11 1.36 6.11 -51.93 -0.32 1.04 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.39 6.23 8.54 -40.82 -0.35 5.88 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 40 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.11 1.38 7.83 -51.92 -0.41 0.97 16 44 H 0.16 2.42 5.25 -52.48 -0.28 2.15 16 45 H 0.13 1.29 6.29 -52.48 -0.33 0.96 16 LS Contribution 370.92 15.07 5.59 5.59 Total: -1.00 -33.74 370.92 -7.72 -41.45 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -6.04 Total: 7.95 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -2.21 Total: 0.13 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.00 Total: -45.57 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.04 Total: -24.73 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.74 -7.72 -41.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194711297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.834 kcal (2) G-P(sol) polarization free energy of solvation -33.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds