Wall clock time and date at job start Tue Mar 31 2020 18:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35975 * 116.99694 * 2 1 4 4 C 1.38719 * 119.98113 * 179.97438 * 3 2 1 5 5 C 1.38087 * 120.01330 * 180.02562 * 4 3 2 6 6 C 1.38848 * 119.98681 * 359.97438 * 5 4 3 7 7 N 1.40112 * 120.01410 * 179.97438 * 6 5 4 8 8 C 1.46765 * 124.35283 * 354.27378 * 7 6 5 9 9 C 1.54479 * 105.47203 * 163.00562 * 8 7 6 10 10 H 1.09000 * 110.96506 * 143.57188 * 9 8 7 11 11 C 1.50697 * 110.96718 * 267.29697 * 9 8 7 12 12 O 1.21275 * 120.00483 * 0.02562 * 11 9 8 13 13 N 1.34781 * 119.99737 * 179.72707 * 11 9 8 14 14 C 1.46499 * 120.00038 * 180.27945 * 13 11 9 15 15 H 1.08998 * 109.46884 * 324.99516 * 14 13 11 16 16 C 1.53001 * 109.47360 * 84.99822 * 14 13 11 17 17 C 1.50701 * 109.47117 * 204.99761 * 14 13 11 18 18 H 1.08004 * 119.99778 * 0.02562 * 17 14 13 19 19 C 1.37871 * 119.99961 * 179.97438 * 17 14 13 20 20 N 1.31513 * 120.00199 * 0.02562 * 19 17 14 21 21 Si 1.86804 * 119.99804 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.47398 * 90.00006 * 21 19 17 23 23 H 1.48509 * 109.47072 * 210.00377 * 21 19 17 24 24 H 1.48500 * 109.47134 * 329.99453 * 21 19 17 25 25 C 1.54621 * 101.76332 * 25.41940 * 9 8 7 26 26 C 1.34419 * 124.34816 * 174.30324 * 7 6 5 27 27 O 1.21298 * 124.94023 * 0.38426 * 26 7 6 28 28 C 1.38841 * 119.96554 * 0.25606 * 6 5 4 29 29 C 1.38088 * 119.98593 * 359.51137 * 28 6 5 30 30 H 1.08996 * 109.47445 * 300.00013 * 1 2 3 31 31 H 1.09002 * 109.46909 * 59.99917 * 1 2 3 32 32 H 1.09003 * 109.47302 * 179.97438 * 1 2 3 33 33 H 1.08002 * 119.99612 * 0.03068 * 4 3 2 34 34 H 1.08008 * 120.00628 * 179.97438 * 5 4 3 35 35 H 1.09006 * 110.24098 * 44.00786 * 8 7 6 36 36 H 1.08997 * 110.24629 * 282.01007 * 8 7 6 37 37 H 0.97004 * 120.00067 * 0.27170 * 13 11 9 38 38 H 1.09001 * 109.46662 * 60.00160 * 16 14 13 39 39 H 1.08997 * 109.47331 * 180.02562 * 16 14 13 40 40 H 1.09000 * 109.46648 * 300.00049 * 16 14 13 41 41 H 0.97000 * 119.99810 * 179.97438 * 20 19 17 42 42 H 1.09000 * 110.48808 * 93.88172 * 25 9 8 43 43 H 1.09011 * 110.48386 * 216.52044 * 25 9 8 44 44 H 1.08006 * 120.00027 * 179.74344 * 28 6 5 45 45 H 1.08004 * 119.98767 * 180.20732 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4316 1.2838 0.0005 5 6 4.0591 2.5138 0.0011 6 6 3.3032 3.6785 0.0005 7 7 3.9393 4.9269 0.0016 8 6 5.3894 5.1174 0.1242 9 6 5.6572 6.5616 -0.3542 10 1 6.4509 7.0256 0.2313 11 6 5.9881 6.5900 -1.8242 12 8 6.0142 5.5577 -2.4600 13 7 6.2492 7.7635 -2.4335 14 6 6.5649 7.7919 -3.8638 15 1 7.1323 6.8997 -4.1284 16 6 5.2663 7.8289 -4.6721 17 6 7.3842 9.0183 -4.1732 18 1 7.6442 9.7074 -3.3832 19 6 7.8028 9.2600 -5.4644 20 7 7.4867 8.4206 -6.4262 21 14 8.8190 10.7799 -5.8477 22 1 10.2620 10.4598 -5.7041 23 1 8.5457 11.2201 -7.2394 24 1 8.4571 11.8682 -4.9044 25 6 4.2961 7.2420 -0.0800 26 6 3.2999 6.1041 -0.1089 27 8 2.0987 6.2348 -0.2163 28 6 1.9167 3.6054 0.0048 29 6 1.2905 2.3747 -0.0006 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 4.0195 0.3778 0.0005 34 1 5.1377 2.5699 0.0019 35 1 5.9182 4.4057 -0.5099 36 1 5.6987 5.0006 1.1629 37 1 6.2280 8.5894 -1.9251 38 1 4.6990 8.7212 -4.4075 39 1 5.5012 7.8496 -5.7363 40 1 4.6737 6.9419 -4.4483 41 1 7.7809 8.5909 -7.3346 42 1 4.2996 7.7213 0.8989 43 1 4.0686 7.9682 -0.8606 44 1 1.3282 4.5110 0.0086 45 1 0.2120 2.3178 -0.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194711297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:16 Heat of formation + Delta-G solvation = -97.465462 kcal Electronic energy + Delta-G solvation = -28283.799943 eV Core-core repulsion = 24265.857179 eV Total energy + Delta-G solvation = -4017.942764 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.39224 -40.94003 -40.19857 -38.40641 -37.46049 -36.59426 -34.47944 -33.76601 -32.16563 -30.96495 -29.76437 -28.79692 -27.97107 -27.34627 -25.13620 -24.15272 -23.15024 -22.25963 -20.95366 -20.89575 -19.19706 -19.17610 -18.58877 -17.95503 -17.30730 -17.09868 -16.79428 -16.59562 -16.27517 -16.07923 -15.80299 -15.42871 -15.11766 -14.84433 -14.81567 -14.44459 -14.43127 -14.29972 -14.04892 -13.72907 -13.56836 -13.25055 -12.99284 -12.91136 -12.84664 -12.82487 -12.69915 -12.48323 -12.27678 -12.23866 -12.11659 -12.01145 -11.11617 -10.85365 -10.71804 -10.68381 -10.55358 -10.08902 -9.75390 -8.60236 -8.16837 -6.34357 0.20937 0.27744 1.44741 1.46689 1.47092 1.57656 1.75645 1.80183 2.33704 2.38529 2.57045 2.75432 3.14072 3.14800 3.28703 3.70534 3.82338 3.87031 3.94466 4.13275 4.30233 4.37576 4.38010 4.42723 4.47648 4.54953 4.60691 4.70930 4.71320 4.76118 4.84322 4.87423 4.88835 5.00092 5.08617 5.16901 5.31000 5.41524 5.43447 5.61804 5.67314 5.81315 5.89589 6.02818 6.09322 6.40833 6.74566 6.91605 6.96129 7.33786 7.56591 8.89520 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021534 B = 0.002470 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.930812 B =11333.526979 C =11718.276661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.092 3.908 4 C -0.128 4.128 5 C -0.114 4.114 6 C 0.114 3.886 7 N -0.553 5.553 8 C 0.106 3.894 9 C -0.109 4.109 10 H 0.180 0.820 11 C 0.498 3.502 12 O -0.595 6.595 13 N -0.700 5.700 14 C 0.273 3.727 15 H -0.001 1.001 16 C -0.134 4.134 17 C -0.542 4.542 18 H 0.079 0.921 19 C 0.011 3.989 20 N -0.920 5.920 21 Si 0.973 3.027 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.257 1.257 25 C -0.131 4.131 26 C 0.501 3.499 27 O -0.556 6.556 28 C -0.138 4.138 29 C -0.181 4.181 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.122 0.878 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.088 0.912 36 H 0.135 0.865 37 H 0.409 0.591 38 H 0.040 0.960 39 H 0.065 0.935 40 H 0.003 0.997 41 H 0.264 0.736 42 H 0.167 0.833 43 H 0.105 0.895 44 H 0.140 0.860 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.740 -8.772 19.755 22.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.245 6.245 3 C 0.047 3.953 4 C -0.147 4.147 5 C -0.134 4.134 6 C 0.021 3.979 7 N -0.276 5.276 8 C -0.015 4.015 9 C -0.130 4.130 10 H 0.197 0.803 11 C 0.285 3.715 12 O -0.476 6.476 13 N -0.349 5.349 14 C 0.169 3.831 15 H 0.017 0.983 16 C -0.193 4.193 17 C -0.580 4.580 18 H 0.097 0.903 19 C -0.189 4.189 20 N -0.559 5.559 21 Si 0.797 3.203 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.181 1.181 25 C -0.171 4.171 26 C 0.292 3.708 27 O -0.435 6.435 28 C -0.159 4.159 29 C -0.200 4.200 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.140 0.860 33 H 0.171 0.829 34 H 0.169 0.831 35 H 0.106 0.894 36 H 0.152 0.848 37 H 0.244 0.756 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.022 0.978 41 H 0.073 0.927 42 H 0.185 0.815 43 H 0.124 0.876 44 H 0.157 0.843 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.227 -9.622 19.040 22.864 hybrid contribution 0.064 0.944 -0.943 1.336 sum -8.163 -8.677 18.097 21.666 Atomic orbital electron populations 1.23324 0.76735 1.05600 1.01980 1.86045 1.23194 1.26282 1.89025 1.19133 0.92730 0.84514 0.98956 1.20480 0.91570 0.98517 1.04095 1.20851 1.00766 0.89733 1.02063 1.17947 0.91990 0.84822 1.03166 1.45876 1.09628 1.04195 1.67864 1.22455 0.77943 0.96620 1.04485 1.22430 1.00754 0.97527 0.92306 0.80273 1.21105 0.76387 0.83444 0.90581 1.90671 1.54330 1.34524 1.68099 1.46204 1.68393 1.08905 1.11390 1.18284 0.92141 0.96055 0.76629 0.98306 1.21910 0.97490 0.96821 1.03064 1.21558 1.33598 1.08088 0.94796 0.90267 1.25836 0.97135 0.99874 0.96014 1.70065 1.46234 1.38093 1.01493 0.85335 0.78454 0.79068 0.77410 1.20265 1.21459 1.18102 1.22443 0.90357 0.95818 1.08477 1.21729 0.88816 0.85907 0.74301 1.90580 1.16161 1.85898 1.50880 1.21413 0.93307 0.99473 1.01664 1.21278 1.01030 0.91092 1.06600 0.91741 0.92449 0.85966 0.82905 0.83086 0.89404 0.84751 0.75556 0.94123 0.91664 0.97820 0.92678 0.81511 0.87648 0.84276 0.83447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -7.11 10.50 -93.27 -0.98 -8.08 16 3 C 0.09 2.23 6.69 22.50 0.15 2.38 16 4 C -0.13 -2.96 9.98 22.35 0.22 -2.74 16 5 C -0.11 -2.78 9.41 22.38 0.21 -2.57 16 6 C 0.11 3.27 6.60 38.11 0.25 3.52 16 7 N -0.55 -14.85 3.14 -627.56 -1.97 -16.82 16 8 C 0.11 2.13 5.84 86.83 0.51 2.64 16 9 C -0.11 -2.17 3.54 -10.49 -0.04 -2.21 16 10 H 0.18 1.76 8.14 -2.39 -0.02 1.74 16 11 C 0.50 17.33 7.05 87.66 0.62 17.95 16 12 O -0.59 -27.06 15.19 -3.02 -0.05 -27.10 16 13 N -0.70 -26.14 4.99 -446.10 -2.22 -28.36 16 14 C 0.27 13.64 2.56 44.25 0.11 13.76 16 15 H 0.00 -0.06 7.58 -2.39 -0.02 -0.08 16 16 C -0.13 -6.84 9.26 71.98 0.67 -6.18 16 17 C -0.54 -27.51 8.73 25.60 0.22 -27.29 16 18 H 0.08 3.66 7.74 -2.91 -0.02 3.64 16 19 C 0.01 0.59 5.30 84.65 0.45 1.04 16 20 N -0.92 -52.50 11.32 21.44 0.24 -52.26 16 21 Si 0.97 40.96 29.54 68.60 2.03 42.99 16 22 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 23 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 24 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 25 C -0.13 -2.54 6.40 30.58 0.20 -2.34 16 26 C 0.50 14.48 7.92 87.90 0.70 15.18 16 27 O -0.56 -19.88 14.82 -3.09 -0.05 -19.93 16 28 C -0.14 -4.08 9.28 22.38 0.21 -3.88 16 29 C -0.18 -4.49 9.03 22.35 0.20 -4.29 16 30 H 0.06 0.73 7.66 -2.39 -0.02 0.71 16 31 H 0.06 0.74 7.66 -2.39 -0.02 0.73 16 32 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 34 H 0.15 3.06 6.74 -2.91 -0.02 3.04 16 35 H 0.09 2.15 6.11 -2.38 -0.01 2.13 16 36 H 0.13 1.46 8.14 -2.39 -0.02 1.45 16 37 H 0.41 12.07 8.54 -92.71 -0.79 11.28 16 38 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.06 3.67 6.07 -2.39 -0.01 3.65 16 40 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 41 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 42 H 0.17 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.11 2.31 7.83 -2.38 -0.02 2.29 16 44 H 0.14 4.59 5.25 -2.91 -0.02 4.57 16 45 H 0.15 2.92 6.29 -2.91 -0.02 2.90 16 Total: -1.00 -78.90 370.92 3.03 -75.87 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: 0.24 Total: 27.37 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 5.79 Total: 6.33 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -3.95 Total: -97.44 kcal Atomic # 8 Polarization: -54.04 SS G_CDS: -1.07 Total: -55.11 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -78.90 3.03 -75.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194711297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.593 kcal (2) G-P(sol) polarization free energy of solvation -78.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds