Wall clock time and date at job start Tue Mar 31 2020 18:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35961 * 117.00171 * 2 1 4 4 C 1.38722 * 119.98822 * 180.02562 * 3 2 1 5 5 C 1.38094 * 120.01751 * 179.70451 * 4 3 2 6 6 C 1.38842 * 119.98464 * 0.27221 * 5 4 3 7 7 N 1.40109 * 120.01710 * 180.02562 * 6 5 4 8 8 C 1.46764 * 124.35167 * 173.98710 * 7 6 5 9 9 C 1.54658 * 105.38149 * 162.85693 * 8 7 6 10 10 H 1.08996 * 110.82438 * 143.78071 * 9 8 7 11 11 C 1.50708 * 111.18906 * 267.59423 * 9 8 7 12 12 O 1.21269 * 120.00026 * 353.86396 * 11 9 8 13 13 N 1.34777 * 119.99522 * 173.86563 * 11 9 8 14 14 C 1.46500 * 119.99690 * 179.97438 * 13 11 9 15 15 H 1.09000 * 109.46892 * 35.00266 * 14 13 11 16 16 C 1.52993 * 109.47328 * 275.00032 * 14 13 11 17 17 C 1.50701 * 109.47032 * 154.99534 * 14 13 11 18 18 H 1.08003 * 120.00311 * 0.02562 * 17 14 13 19 19 C 1.37875 * 119.99979 * 180.02562 * 17 14 13 20 20 N 1.31516 * 120.00299 * 0.02562 * 19 17 14 21 21 Si 1.86806 * 120.00037 * 180.02562 * 19 17 14 22 22 H 1.48496 * 109.47060 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47137 * 119.99881 * 21 19 17 24 24 H 1.48505 * 109.46899 * 239.99935 * 21 19 17 25 25 C 1.54633 * 101.68602 * 25.76678 * 9 8 7 26 26 C 1.34422 * 124.34656 * 354.28998 * 7 6 5 27 27 O 1.21288 * 124.94152 * 0.38507 * 26 7 6 28 28 C 1.38855 * 119.97089 * 359.97438 * 6 5 4 29 29 C 1.38091 * 119.98115 * 0.02562 * 28 6 5 30 30 H 1.09005 * 109.47543 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47650 * 300.00228 * 1 2 3 32 32 H 1.09004 * 109.47156 * 60.00249 * 1 2 3 33 33 H 1.08005 * 119.99070 * 359.97438 * 4 3 2 34 34 H 1.07998 * 120.00599 * 180.30111 * 5 4 3 35 35 H 1.09004 * 110.24618 * 281.98271 * 8 7 6 36 36 H 1.09000 * 110.24569 * 43.98709 * 8 7 6 37 37 H 0.97003 * 120.00185 * 359.97438 * 13 11 9 38 38 H 1.08991 * 109.47304 * 59.99863 * 16 14 13 39 39 H 1.09003 * 109.47363 * 180.02562 * 16 14 13 40 40 H 1.09007 * 109.47112 * 299.99659 * 16 14 13 41 41 H 0.97001 * 120.00175 * 180.02562 * 20 19 17 42 42 H 1.08994 * 110.48469 * 216.31287 * 25 9 8 43 43 H 1.08993 * 110.59464 * 93.72468 * 25 9 8 44 44 H 1.07995 * 120.00648 * 180.02562 * 28 6 5 45 45 H 1.07998 * 119.98558 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4316 1.2837 -0.0005 5 6 4.0592 2.5137 -0.0067 6 6 3.3033 3.6784 -0.0067 7 7 3.9394 4.9268 -0.0135 8 6 3.2410 6.2113 -0.1410 9 6 4.2538 7.2780 0.3369 10 1 4.1602 8.1917 -0.2500 11 6 4.0898 7.5649 1.8073 12 8 3.1724 7.0659 2.4238 13 7 4.9627 8.3760 2.4370 14 6 4.8029 8.6553 3.8663 15 1 4.4198 7.7675 4.3693 16 6 3.8190 9.8119 4.0530 17 6 6.1375 9.0307 4.4570 18 1 7.0168 9.0589 3.8304 19 6 6.2362 9.3382 5.7974 20 7 5.1657 9.3035 6.5606 21 14 7.8904 9.8042 6.5294 22 1 8.9290 9.7682 5.4687 23 1 7.8116 11.1732 7.0993 24 1 8.2459 8.8411 7.6025 25 6 5.6031 6.5764 0.0571 26 6 5.2682 5.1015 0.0901 27 8 6.0803 4.2069 0.1952 28 6 1.9167 3.6054 -0.0009 29 6 1.2905 2.3747 0.0052 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 4.0195 0.3776 -0.0005 34 1 5.1377 2.5698 -0.0120 35 1 2.9644 6.3887 -1.1803 36 1 2.3548 6.2234 0.4934 37 1 5.6967 8.7749 1.9439 38 1 2.8538 9.5404 3.6258 39 1 3.7005 10.0200 5.1164 40 1 4.2022 10.6998 3.5500 41 1 5.2351 9.5202 7.5035 42 1 6.3281 6.8204 0.8335 43 1 5.9860 6.8588 -0.9235 44 1 1.3282 4.5109 -0.0013 45 1 0.2120 2.3178 0.0101 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194711310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:21 Heat of formation + Delta-G solvation = -73.977055 kcal Electronic energy + Delta-G solvation = -28287.551171 eV Core-core repulsion = 24270.626940 eV Total energy + Delta-G solvation = -4016.924230 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.33021 -39.96648 -38.83122 -37.41430 -36.28244 -34.84957 -33.09876 -32.25803 -31.21859 -29.38060 -28.53006 -27.88658 -27.17324 -25.32153 -24.11243 -22.76383 -22.24933 -20.71713 -19.86020 -19.44834 -18.30628 -17.82244 -17.55256 -16.34744 -16.17691 -15.87034 -15.55630 -15.41734 -15.27065 -14.69665 -14.44742 -14.15175 -14.09223 -13.75931 -13.58714 -13.34618 -13.25050 -12.96895 -12.70542 -12.49332 -12.28476 -12.11834 -11.97293 -11.68027 -11.57266 -11.41984 -11.12234 -11.01754 -10.99008 -10.80380 -10.35126 -10.28783 -9.84239 -9.67031 -9.19145 -9.10145 -9.09451 -8.60791 -8.03270 -7.61329 -6.16765 -4.26326 1.22941 1.25936 2.51727 2.75622 3.13185 3.17229 3.21807 3.29939 3.32248 3.74630 3.79580 4.11240 4.24978 4.32232 4.66080 4.69342 4.78722 4.89316 4.93416 5.01827 5.15602 5.16162 5.23416 5.24675 5.28741 5.36367 5.45916 5.56144 5.67890 5.68327 5.87799 5.91998 6.13295 6.20972 6.41662 6.74986 6.85087 6.87800 7.02666 7.07407 7.27798 7.34539 7.46661 7.63159 7.84266 8.00168 8.08886 8.53541 8.70626 8.97938 9.41336 10.89260 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016475 B = 0.002616 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.130119 B =10700.194503 C =10884.535119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.096 3.904 4 C -0.123 4.123 5 C -0.118 4.118 6 C 0.139 3.861 7 N -0.551 5.551 8 C 0.110 3.890 9 C -0.127 4.127 10 H 0.126 0.874 11 C 0.506 3.494 12 O -0.546 6.546 13 N -0.703 5.703 14 C 0.264 3.736 15 H 0.048 0.952 16 C -0.146 4.146 17 C -0.534 4.534 18 H 0.062 0.938 19 C 0.066 3.934 20 N -0.883 5.883 21 Si 0.902 3.098 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.282 1.282 25 C -0.145 4.145 26 C 0.520 3.480 27 O -0.513 6.513 28 C -0.114 4.114 29 C -0.180 4.180 30 H 0.097 0.903 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.133 0.867 34 H 0.162 0.838 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.390 0.610 38 H 0.014 0.986 39 H 0.090 0.910 40 H 0.027 0.973 41 H 0.264 0.736 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.131 0.869 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.316 -9.118 -17.797 21.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.051 3.949 4 C -0.142 4.142 5 C -0.138 4.138 6 C 0.046 3.954 7 N -0.275 5.275 8 C -0.013 4.013 9 C -0.149 4.149 10 H 0.144 0.856 11 C 0.289 3.711 12 O -0.424 6.424 13 N -0.350 5.350 14 C 0.162 3.838 15 H 0.066 0.934 16 C -0.205 4.205 17 C -0.573 4.573 18 H 0.080 0.920 19 C -0.137 4.137 20 N -0.520 5.520 21 Si 0.729 3.271 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.208 1.208 25 C -0.185 4.185 26 C 0.309 3.691 27 O -0.388 6.388 28 C -0.135 4.135 29 C -0.199 4.199 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.151 0.849 34 H 0.179 0.821 35 H 0.104 0.896 36 H 0.123 0.877 37 H 0.222 0.778 38 H 0.033 0.967 39 H 0.109 0.891 40 H 0.046 0.954 41 H 0.074 0.926 42 H 0.134 0.866 43 H 0.136 0.864 44 H 0.148 0.852 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.503 -10.077 -17.053 21.181 hybrid contribution 0.800 0.795 0.316 1.171 sum -6.703 -9.282 -16.737 20.279 Atomic orbital electron populations 1.23021 0.78710 1.03708 1.01303 1.86063 1.21108 1.26948 1.89250 1.18987 0.92342 0.84100 0.99471 1.20313 0.91146 0.98187 1.04520 1.21483 1.02390 0.89657 1.00273 1.17678 0.91671 0.83953 1.02127 1.45692 1.07679 1.05420 1.68686 1.22212 0.96958 0.80053 1.02047 1.22425 0.95341 1.00092 0.97037 0.85596 1.19976 0.83330 0.79902 0.87866 1.90675 1.32785 1.51890 1.67073 1.46506 1.28566 1.46601 1.13372 1.18784 0.95568 0.95271 0.74130 0.93369 1.22073 0.96302 0.98164 1.03968 1.21231 0.93354 1.48147 0.94545 0.91956 1.24891 0.97027 0.94946 0.96847 1.69906 1.28050 1.47811 1.06261 0.86388 0.83379 0.78104 0.79211 1.19677 1.20852 1.20844 1.22394 0.98089 0.91851 1.06190 1.20972 0.81403 0.91837 0.74846 1.90608 1.51912 1.47568 1.48759 1.20595 0.92185 0.98061 1.02612 1.20980 0.99879 0.91571 1.07448 0.88450 0.92659 0.92814 0.84870 0.82131 0.89613 0.87653 0.77758 0.96658 0.89104 0.95389 0.92577 0.86583 0.86426 0.85162 0.85148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.65 10.50 -19.62 -0.21 -3.85 16 3 C 0.10 1.20 6.69 -39.22 -0.26 0.94 16 4 C -0.12 -1.61 9.98 -39.46 -0.39 -2.00 16 5 C -0.12 -1.73 9.28 -39.41 -0.37 -2.09 16 6 C 0.14 2.00 6.60 -83.62 -0.55 1.45 16 7 N -0.55 -7.72 3.14 -112.12 -0.35 -8.08 16 8 C 0.11 1.25 5.90 -3.03 -0.02 1.23 16 9 C -0.13 -1.48 3.54 -90.04 -0.32 -1.80 16 10 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 11 C 0.51 9.03 7.13 -10.98 -0.08 8.95 16 12 O -0.55 -12.08 15.20 5.57 0.08 -11.99 16 13 N -0.70 -13.47 4.79 -54.93 -0.26 -13.73 16 14 C 0.26 6.48 2.56 -69.09 -0.18 6.30 16 15 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 16 C -0.15 -3.50 9.26 37.15 0.34 -3.16 16 17 C -0.53 -13.82 8.73 -34.44 -0.30 -14.12 16 18 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 19 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 20 N -0.88 -24.62 11.32 55.43 0.63 -23.99 16 21 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 25 C -0.14 -1.65 6.39 -26.74 -0.17 -1.82 16 26 C 0.52 7.82 7.92 -10.86 -0.09 7.73 16 27 O -0.51 -9.13 14.81 5.55 0.08 -9.05 16 28 C -0.11 -1.42 9.42 -39.41 -0.37 -1.79 16 29 C -0.18 -2.06 9.03 -39.46 -0.36 -2.42 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.37 7.65 -51.93 -0.40 -0.02 16 32 H 0.05 0.33 7.67 -51.93 -0.40 -0.07 16 33 H 0.13 1.53 8.06 -52.48 -0.42 1.11 16 34 H 0.16 2.54 5.25 -52.49 -0.28 2.26 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.11 1.36 6.05 -51.93 -0.31 1.04 16 37 H 0.39 6.26 8.36 -40.82 -0.34 5.92 16 38 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 40 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 41 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 42 H 0.12 1.45 7.51 -51.93 -0.39 1.06 16 43 H 0.12 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.13 1.40 6.74 -52.49 -0.35 1.05 16 45 H 0.13 1.15 6.29 -52.49 -0.33 0.82 16 LS Contribution 370.28 15.07 5.58 5.58 Total: -1.00 -33.88 370.28 -7.69 -41.57 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.01 Total: 7.82 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -2.21 Total: 0.26 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.01 Total: -45.79 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.04 Total: -24.89 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.88 -7.69 -41.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194711310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.409 kcal (2) G-P(sol) polarization free energy of solvation -33.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds