Wall clock time and date at job start Tue Mar 31 2020 18:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35961 * 117.00171 * 2 1 4 4 C 1.38722 * 119.98822 * 180.02562 * 3 2 1 5 5 C 1.38094 * 120.01751 * 179.70451 * 4 3 2 6 6 C 1.38842 * 119.98464 * 0.27221 * 5 4 3 7 7 N 1.40109 * 120.01710 * 180.02562 * 6 5 4 8 8 C 1.46764 * 124.35167 * 173.98710 * 7 6 5 9 9 C 1.54658 * 105.38149 * 162.85693 * 8 7 6 10 10 H 1.08996 * 110.82438 * 143.78071 * 9 8 7 11 11 C 1.50708 * 111.18906 * 267.59423 * 9 8 7 12 12 O 1.21269 * 120.00026 * 353.86396 * 11 9 8 13 13 N 1.34777 * 119.99522 * 173.86563 * 11 9 8 14 14 C 1.46500 * 119.99690 * 179.97438 * 13 11 9 15 15 H 1.09000 * 109.46892 * 35.00266 * 14 13 11 16 16 C 1.52993 * 109.47328 * 275.00032 * 14 13 11 17 17 C 1.50701 * 109.47032 * 154.99534 * 14 13 11 18 18 H 1.08003 * 120.00311 * 0.02562 * 17 14 13 19 19 C 1.37875 * 119.99979 * 180.02562 * 17 14 13 20 20 N 1.31516 * 120.00299 * 0.02562 * 19 17 14 21 21 Si 1.86806 * 120.00037 * 180.02562 * 19 17 14 22 22 H 1.48496 * 109.47060 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47137 * 119.99881 * 21 19 17 24 24 H 1.48505 * 109.46899 * 239.99935 * 21 19 17 25 25 C 1.54633 * 101.68602 * 25.76678 * 9 8 7 26 26 C 1.34422 * 124.34656 * 354.28998 * 7 6 5 27 27 O 1.21288 * 124.94152 * 0.38507 * 26 7 6 28 28 C 1.38855 * 119.97089 * 359.97438 * 6 5 4 29 29 C 1.38091 * 119.98115 * 0.02562 * 28 6 5 30 30 H 1.09005 * 109.47543 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47650 * 300.00228 * 1 2 3 32 32 H 1.09004 * 109.47156 * 60.00249 * 1 2 3 33 33 H 1.08005 * 119.99070 * 359.97438 * 4 3 2 34 34 H 1.07998 * 120.00599 * 180.30111 * 5 4 3 35 35 H 1.09004 * 110.24618 * 281.98271 * 8 7 6 36 36 H 1.09000 * 110.24569 * 43.98709 * 8 7 6 37 37 H 0.97003 * 120.00185 * 359.97438 * 13 11 9 38 38 H 1.08991 * 109.47304 * 59.99863 * 16 14 13 39 39 H 1.09003 * 109.47363 * 180.02562 * 16 14 13 40 40 H 1.09007 * 109.47112 * 299.99659 * 16 14 13 41 41 H 0.97001 * 120.00175 * 180.02562 * 20 19 17 42 42 H 1.08994 * 110.48469 * 216.31287 * 25 9 8 43 43 H 1.08993 * 110.59464 * 93.72468 * 25 9 8 44 44 H 1.07995 * 120.00648 * 180.02562 * 28 6 5 45 45 H 1.07998 * 119.98558 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4316 1.2837 -0.0005 5 6 4.0592 2.5137 -0.0067 6 6 3.3033 3.6784 -0.0067 7 7 3.9394 4.9268 -0.0135 8 6 3.2410 6.2113 -0.1410 9 6 4.2538 7.2780 0.3369 10 1 4.1602 8.1917 -0.2500 11 6 4.0898 7.5649 1.8073 12 8 3.1724 7.0659 2.4238 13 7 4.9627 8.3760 2.4370 14 6 4.8029 8.6553 3.8663 15 1 4.4198 7.7675 4.3693 16 6 3.8190 9.8119 4.0530 17 6 6.1375 9.0307 4.4570 18 1 7.0168 9.0589 3.8304 19 6 6.2362 9.3382 5.7974 20 7 5.1657 9.3035 6.5606 21 14 7.8904 9.8042 6.5294 22 1 8.9290 9.7682 5.4687 23 1 7.8116 11.1732 7.0993 24 1 8.2459 8.8411 7.6025 25 6 5.6031 6.5764 0.0571 26 6 5.2682 5.1015 0.0901 27 8 6.0803 4.2069 0.1952 28 6 1.9167 3.6054 -0.0009 29 6 1.2905 2.3747 0.0052 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 4.0195 0.3776 -0.0005 34 1 5.1377 2.5698 -0.0120 35 1 2.9644 6.3887 -1.1803 36 1 2.3548 6.2234 0.4934 37 1 5.6967 8.7749 1.9439 38 1 2.8538 9.5404 3.6258 39 1 3.7005 10.0200 5.1164 40 1 4.2022 10.6998 3.5500 41 1 5.2351 9.5202 7.5035 42 1 6.3281 6.8204 0.8335 43 1 5.9860 6.8588 -0.9235 44 1 1.3282 4.5109 -0.0013 45 1 0.2120 2.3178 0.0101 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194711310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:20 Heat of formation + Delta-G solvation = -97.336538 kcal Electronic energy + Delta-G solvation = -28288.564114 eV Core-core repulsion = 24270.626940 eV Total energy + Delta-G solvation = -4017.937174 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.38840 -40.93988 -40.20689 -38.39475 -37.46749 -36.60442 -34.50149 -33.75489 -32.18433 -30.95022 -29.67446 -28.85792 -27.91881 -27.34023 -25.29386 -23.74985 -23.41532 -22.28044 -20.97252 -20.86546 -19.20481 -19.19471 -18.58326 -17.92008 -17.19500 -17.11979 -16.83278 -16.59546 -16.41630 -16.06540 -15.83653 -15.42872 -15.13434 -14.82200 -14.71132 -14.54471 -14.39878 -14.25056 -13.99691 -13.72519 -13.56368 -13.27844 -12.96665 -12.94944 -12.90876 -12.77667 -12.73305 -12.49046 -12.26611 -12.22568 -12.12034 -11.89423 -11.09211 -10.86292 -10.73407 -10.69401 -10.57232 -10.09381 -9.74862 -8.60384 -8.18685 -6.35573 0.21981 0.25970 1.42763 1.44732 1.45295 1.55940 1.76001 1.79657 2.32695 2.39509 2.55765 2.74915 3.12203 3.15133 3.26947 3.71856 3.78126 3.88905 3.92720 4.16975 4.28175 4.37798 4.41841 4.44025 4.46450 4.53531 4.65339 4.71577 4.75413 4.78934 4.85036 4.92254 4.94644 4.97598 5.10953 5.14922 5.25083 5.41870 5.45128 5.61158 5.70246 5.84226 5.90908 6.02636 6.11198 6.42256 6.73369 6.91764 6.95589 7.32442 7.55557 8.87585 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016475 B = 0.002616 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.130119 B =10700.194503 C =10884.535119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.094 3.906 4 C -0.135 4.135 5 C -0.137 4.137 6 C 0.114 3.886 7 N -0.555 5.555 8 C 0.106 3.894 9 C -0.108 4.108 10 H 0.182 0.818 11 C 0.499 3.501 12 O -0.595 6.595 13 N -0.701 5.701 14 C 0.270 3.730 15 H -0.008 1.008 16 C -0.132 4.132 17 C -0.544 4.544 18 H 0.075 0.925 19 C 0.013 3.987 20 N -0.918 5.918 21 Si 0.969 3.031 22 H -0.258 1.258 23 H -0.277 1.277 24 H -0.288 1.288 25 C -0.134 4.134 26 C 0.500 3.500 27 O -0.555 6.555 28 C -0.115 4.115 29 C -0.175 4.175 30 H 0.119 0.881 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.135 0.865 36 H 0.089 0.911 37 H 0.408 0.592 38 H 0.016 0.984 39 H 0.062 0.938 40 H 0.044 0.956 41 H 0.264 0.736 42 H 0.105 0.895 43 H 0.168 0.832 44 H 0.149 0.851 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.587 -7.998 -20.218 23.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.048 3.952 4 C -0.154 4.154 5 C -0.157 4.157 6 C 0.020 3.980 7 N -0.278 5.278 8 C -0.015 4.015 9 C -0.129 4.129 10 H 0.199 0.801 11 C 0.285 3.715 12 O -0.476 6.476 13 N -0.349 5.349 14 C 0.167 3.833 15 H 0.010 0.990 16 C -0.191 4.191 17 C -0.582 4.582 18 H 0.093 0.907 19 C -0.187 4.187 20 N -0.556 5.556 21 Si 0.794 3.206 22 H -0.182 1.182 23 H -0.203 1.203 24 H -0.215 1.215 25 C -0.173 4.173 26 C 0.291 3.709 27 O -0.435 6.435 28 C -0.135 4.135 29 C -0.194 4.194 30 H 0.137 0.863 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.158 0.842 34 H 0.160 0.840 35 H 0.153 0.847 36 H 0.107 0.893 37 H 0.244 0.756 38 H 0.035 0.965 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.123 0.877 43 H 0.185 0.815 44 H 0.167 0.833 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.783 -8.939 -19.525 22.841 hybrid contribution 0.751 0.317 1.081 1.354 sum -7.032 -8.622 -18.443 21.539 Atomic orbital electron populations 1.23355 0.76457 1.05612 1.02299 1.86050 1.23460 1.26396 1.89005 1.19089 0.92213 0.85035 0.98871 1.20437 0.92105 0.98011 1.04852 1.21406 1.01717 0.90773 1.01843 1.17946 0.92629 0.84171 1.03206 1.45901 1.07719 1.06144 1.68006 1.22501 0.95841 0.78616 1.04518 1.22454 0.95625 1.02550 0.92291 0.80065 1.21084 0.81758 0.78136 0.90480 1.90659 1.34730 1.53237 1.69001 1.46214 1.29811 1.47493 1.11429 1.18309 0.95091 0.92944 0.76979 0.99042 1.21867 0.96353 0.98579 1.02278 1.21598 0.94181 1.47449 0.94991 0.90703 1.25787 1.00425 0.95008 0.97483 1.70059 1.30229 1.48883 1.06476 0.85342 0.79341 0.77598 0.78340 1.18206 1.20261 1.21453 1.22472 0.97513 0.88844 1.08507 1.21758 0.81556 0.93232 0.74312 1.90585 1.53019 1.49097 1.50751 1.20865 0.91531 0.99252 1.01843 1.21320 1.01352 0.90774 1.05979 0.86291 0.92069 0.91282 0.84223 0.84044 0.84688 0.89277 0.75622 0.96538 0.91920 0.93655 0.92652 0.87716 0.81493 0.83328 0.82185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -7.27 10.50 -93.11 -0.98 -8.25 16 3 C 0.09 2.29 6.69 22.50 0.15 2.44 16 4 C -0.13 -3.67 9.98 22.35 0.22 -3.45 16 5 C -0.14 -4.22 9.28 22.38 0.21 -4.01 16 6 C 0.11 3.29 6.60 38.11 0.25 3.54 16 7 N -0.55 -15.08 3.14 -627.21 -1.97 -17.05 16 8 C 0.11 2.11 5.90 86.89 0.51 2.63 16 9 C -0.11 -2.14 3.54 -10.42 -0.04 -2.18 16 10 H 0.18 1.70 8.14 -2.39 -0.02 1.68 16 11 C 0.50 17.31 7.13 87.66 0.62 17.94 16 12 O -0.59 -26.80 15.20 -3.00 -0.05 -26.85 16 13 N -0.70 -26.27 4.79 -446.11 -2.14 -28.41 16 14 C 0.27 13.54 2.56 44.24 0.11 13.66 16 15 H -0.01 -0.51 7.58 -2.39 -0.02 -0.53 16 16 C -0.13 -6.39 9.26 71.98 0.67 -5.72 16 17 C -0.54 -28.16 8.73 25.60 0.22 -27.94 16 18 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 19 C 0.01 0.69 5.30 84.65 0.45 1.14 16 20 N -0.92 -52.55 11.32 21.45 0.24 -52.30 16 21 Si 0.97 41.91 29.54 68.60 2.03 43.94 16 22 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 23 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 24 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 25 C -0.13 -2.65 6.39 30.59 0.20 -2.46 16 26 C 0.50 14.83 7.92 87.90 0.70 15.53 16 27 O -0.56 -20.53 14.81 -3.06 -0.05 -20.58 16 28 C -0.11 -2.73 9.42 22.38 0.21 -2.52 16 29 C -0.18 -3.76 9.03 22.35 0.20 -3.56 16 30 H 0.12 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.06 0.69 7.65 -2.39 -0.02 0.67 16 32 H 0.07 0.65 7.67 -2.38 -0.02 0.63 16 33 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 34 H 0.14 4.86 5.25 -2.91 -0.02 4.85 16 35 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.09 2.13 6.05 -2.39 -0.01 2.12 16 37 H 0.41 12.21 8.36 -92.71 -0.77 11.44 16 38 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.06 3.40 6.07 -2.39 -0.01 3.38 16 40 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 41 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 42 H 0.10 2.40 7.51 -2.39 -0.02 2.38 16 43 H 0.17 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.15 2.90 6.74 -2.91 -0.02 2.88 16 45 H 0.16 2.37 6.29 -2.91 -0.02 2.35 16 Total: -1.00 -79.94 370.28 3.15 -76.78 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 0.26 Total: 26.36 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 5.80 Total: 6.35 kcal Atomic # 7 Polarization: -93.89 SS G_CDS: -3.87 Total: -97.76 kcal Atomic # 8 Polarization: -54.60 SS G_CDS: -1.07 Total: -55.67 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -79.94 3.15 -76.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194711310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.553 kcal (2) G-P(sol) polarization free energy of solvation -79.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds