Wall clock time and date at job start Tue Mar 31 2020 18:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47570 * 2 1 4 4 C 1.50695 * 109.47510 * 120.00688 * 2 1 3 5 5 H 1.08003 * 120.00179 * 119.99354 * 4 2 1 6 6 C 1.37878 * 120.00005 * 299.99691 * 4 2 1 7 7 N 1.31514 * 120.00254 * 179.97438 * 6 4 2 8 8 Si 1.86808 * 119.99786 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46785 * 90.00092 * 8 6 4 10 10 H 1.48496 * 109.46763 * 210.00014 * 8 6 4 11 11 H 1.48500 * 109.46781 * 329.99906 * 8 6 4 12 12 N 1.46500 * 109.46759 * 240.00516 * 2 1 3 13 13 C 1.34785 * 120.00218 * 84.99858 * 12 2 1 14 14 O 1.21547 * 119.99379 * 0.02562 * 13 12 2 15 15 C 1.47856 * 119.99977 * 179.97438 * 13 12 2 16 16 C 1.39612 * 120.11220 * 0.02562 * 15 13 12 17 17 C 1.37984 * 119.99788 * 180.02562 * 16 15 13 18 18 C 1.38258 * 120.21845 * 0.02562 * 17 16 15 19 19 C 1.38944 * 120.22567 * 359.97438 * 18 17 16 20 20 N 1.39958 * 120.00431 * 180.02562 * 19 18 17 21 21 C 1.34769 * 120.00276 * 146.76530 * 20 19 18 22 22 O 1.21284 * 120.00299 * 354.72345 * 21 20 19 23 23 C 1.50701 * 119.99866 * 174.73086 * 21 20 19 24 24 H 1.08992 * 109.99723 * 56.08312 * 23 21 20 25 25 C 1.54097 * 109.87543 * 294.99444 * 23 21 20 26 26 C 1.54813 * 104.19159 * 238.54545 * 25 23 21 27 27 C 1.55003 * 102.12469 * 339.10755 * 26 25 23 28 28 O 1.43745 * 109.87832 * 177.16595 * 23 21 20 29 29 C 1.38641 * 120.00054 * 0.27680 * 19 18 17 30 30 H 1.09005 * 109.46873 * 299.99460 * 1 2 3 31 31 H 1.08993 * 109.47362 * 59.99142 * 1 2 3 32 32 H 1.08999 * 109.47224 * 179.97438 * 1 2 3 33 33 H 0.97003 * 119.99902 * 180.02562 * 7 6 4 34 34 H 0.97002 * 120.00091 * 265.00176 * 12 2 1 35 35 H 1.08002 * 120.00457 * 359.97438 * 16 15 13 36 36 H 1.07993 * 119.89554 * 179.97438 * 17 16 15 37 37 H 1.08000 * 119.88401 * 179.97438 * 18 17 16 38 38 H 0.97008 * 119.99365 * 326.76516 * 20 19 18 39 39 H 1.09000 * 110.48648 * 119.87319 * 25 23 21 40 40 H 1.08999 * 110.60310 * 357.28339 * 25 23 21 41 41 H 1.08998 * 110.90189 * 97.31679 * 26 25 23 42 42 H 1.09002 * 110.91358 * 220.89191 * 26 25 23 43 43 H 1.08989 * 110.61857 * 155.53766 * 27 26 25 44 44 H 1.09003 * 110.61246 * 278.53940 * 27 26 25 45 45 H 1.07998 * 120.11042 * 179.72717 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5887 1.1311 6 6 1.6995 -0.2396 2.4827 7 7 2.1375 -0.8599 3.5564 8 14 0.6261 1.2797 2.6542 9 1 -0.8018 0.8743 2.6995 10 1 0.9776 1.9950 3.9072 11 1 0.8494 2.1772 1.4924 12 7 2.0183 -0.6905 -1.1963 13 6 2.1469 -0.0181 -2.3573 14 8 1.8583 1.1614 -2.4115 15 6 2.6403 -0.7149 -3.5644 16 6 2.9729 -2.0695 -3.5045 17 6 3.4336 -2.7173 -4.6323 18 6 3.5679 -2.0292 -5.8240 19 6 3.2395 -0.6810 -5.8940 20 7 3.3767 0.0109 -7.1029 21 6 2.5204 1.0048 -7.4115 22 8 1.5745 1.2366 -6.6887 23 6 2.7382 1.8279 -8.6549 24 1 2.7846 1.1782 -9.5287 25 6 4.0473 2.6311 -8.5289 26 6 3.6033 4.1065 -8.6789 27 6 2.2382 3.9642 -9.3992 28 8 1.6683 2.7758 -8.8071 29 6 2.7807 -0.0197 -4.7652 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 -0.3633 -1.0276 -0.0005 33 1 1.9029 -0.5288 4.4375 34 1 2.2489 -1.6317 -1.1528 35 1 2.8706 -2.6101 -2.5751 36 1 3.6908 -3.7650 -4.5840 37 1 3.9294 -2.5415 -6.7034 38 1 4.0883 -0.2250 -7.7186 39 1 4.7402 2.3584 -9.3250 40 1 4.5051 2.4677 -7.5534 41 1 3.4810 4.5770 -7.7033 42 1 4.3103 4.6652 -9.2923 43 1 1.6083 4.8317 -9.2028 44 1 2.3822 3.8277 -10.4710 45 1 2.5291 1.0293 -4.8165 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194712727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:53 Heat of formation + Delta-G solvation = -78.134344 kcal Electronic energy + Delta-G solvation = -27928.586024 eV Core-core repulsion = 23911.481520 eV Total energy + Delta-G solvation = -4017.104504 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.08032 -39.83475 -38.88961 -37.71920 -35.03328 -34.96360 -32.66709 -32.38873 -31.23794 -30.89918 -29.73918 -28.76492 -25.17590 -24.49433 -24.04573 -22.60886 -22.17526 -21.16216 -20.52688 -19.65618 -18.53076 -17.87368 -16.96427 -16.64232 -16.46183 -15.90293 -15.77407 -15.56050 -15.28938 -14.84370 -14.47786 -14.17573 -14.14192 -14.07015 -13.98443 -13.50618 -13.07147 -12.96492 -12.67545 -12.29267 -12.18982 -12.16683 -11.91994 -11.78791 -11.73303 -11.57636 -11.38396 -11.23102 -10.77548 -10.60148 -10.44299 -10.14474 -9.78325 -9.68374 -9.19940 -9.18848 -8.94042 -8.72574 -8.30693 -8.09947 -6.18232 -4.20565 0.90581 1.27073 2.27057 2.45419 3.24505 3.27712 3.38807 3.44876 3.52342 3.87681 3.97069 4.11188 4.20225 4.29118 4.35329 4.49153 4.68108 4.79911 4.83761 4.86054 5.05918 5.15907 5.17150 5.19987 5.23046 5.29488 5.39298 5.42848 5.46644 5.57480 5.84469 6.08769 6.19624 6.30009 6.33436 6.37151 6.42839 6.47810 6.61434 6.87576 6.92183 7.06212 7.24363 7.32295 7.55175 7.83786 8.18225 8.54908 8.78268 8.95552 9.42893 10.93825 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016220 B = 0.002644 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.823639 B =10588.113345 C =11816.595074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.236 3.764 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.080 0.920 6 C 0.078 3.922 7 N -0.893 5.893 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.261 1.261 12 N -0.694 5.694 13 C 0.544 3.456 14 O -0.546 6.546 15 C -0.102 4.102 16 C -0.100 4.100 17 C -0.107 4.107 18 C -0.128 4.128 19 C 0.133 3.867 20 N -0.672 5.672 21 C 0.506 3.494 22 O -0.485 6.485 23 C 0.064 3.936 24 H 0.097 0.903 25 C -0.149 4.149 26 C -0.155 4.155 27 C 0.044 3.956 28 O -0.346 6.346 29 C -0.067 4.067 30 H 0.048 0.952 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.267 0.733 34 H 0.395 0.605 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.410 0.590 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.065 0.935 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.279 1.007 -29.297 30.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.133 3.867 3 H 0.068 0.932 4 C -0.572 4.572 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.530 5.530 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.186 1.186 12 N -0.343 5.343 13 C 0.329 3.671 14 O -0.426 6.426 15 C -0.106 4.106 16 C -0.120 4.120 17 C -0.126 4.126 18 C -0.149 4.149 19 C 0.040 3.960 20 N -0.320 5.320 21 C 0.291 3.709 22 O -0.356 6.356 23 C 0.003 3.997 24 H 0.115 0.885 25 C -0.187 4.187 26 C -0.193 4.193 27 C -0.033 4.033 28 O -0.264 6.264 29 C -0.087 4.087 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.229 0.771 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.145 0.855 38 H 0.245 0.755 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.118 0.882 44 H 0.083 0.917 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.123 2.068 -28.537 29.260 hybrid contribution 0.103 0.073 -0.119 0.174 sum 6.226 2.141 -28.656 29.403 Atomic orbital electron populations 1.22454 0.99189 1.00944 0.99424 1.19138 0.90240 0.94746 0.82598 0.93236 1.21028 1.33252 1.14416 0.88500 0.90156 1.24821 0.95474 0.96711 0.95499 1.69868 1.44958 1.40133 0.98023 0.86880 0.80565 0.83655 0.77447 1.20257 1.22168 1.18587 1.46129 1.64744 1.13807 1.09574 1.18218 0.78796 0.86770 0.83308 1.90738 1.51152 1.15642 1.85042 1.20100 1.01757 0.94224 0.94491 1.21432 0.97706 0.93626 0.99206 1.20869 0.99725 1.00004 0.91963 1.20965 1.03248 0.91732 0.98958 1.17539 1.02224 0.91089 0.85172 1.43361 1.33200 1.35593 1.19843 1.20697 0.82295 0.80415 0.87463 1.90840 1.28255 1.66141 1.50333 1.22569 0.88706 0.92737 0.95712 0.88498 1.22975 0.96150 0.95303 1.04294 1.23163 0.97442 0.96134 1.02536 1.23693 0.94208 0.88488 0.96866 1.89064 1.29542 1.25155 1.82593 1.21234 0.96677 1.01380 0.89456 0.93399 0.94400 0.92752 0.92301 0.77082 0.84962 0.84980 0.85505 0.75454 0.89258 0.89631 0.89848 0.89552 0.88247 0.91670 0.83632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 8.97 37.16 0.33 -3.49 16 2 C 0.24 5.89 2.15 -69.08 -0.15 5.74 16 3 H 0.05 1.36 6.63 -51.93 -0.34 1.01 16 4 C -0.53 -14.73 9.31 -34.44 -0.32 -15.05 16 5 H 0.08 2.30 7.98 -52.48 -0.42 1.88 16 6 C 0.08 2.24 5.45 -17.82 -0.10 2.14 16 7 N -0.89 -26.72 13.96 55.43 0.77 -25.95 16 8 Si 0.88 22.31 24.37 -169.99 -4.14 18.17 16 9 H -0.28 -6.74 6.87 56.52 0.39 -6.35 16 10 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 11 H -0.26 -6.60 6.53 56.52 0.37 -6.23 16 12 N -0.69 -14.74 5.02 -55.88 -0.28 -15.02 16 13 C 0.54 11.55 7.74 -12.32 -0.10 11.46 16 14 O -0.55 -13.69 16.01 5.32 0.09 -13.61 16 15 C -0.10 -1.74 5.87 -104.99 -0.62 -2.35 16 16 C -0.10 -1.34 9.54 -39.16 -0.37 -1.71 16 17 C -0.11 -1.12 10.02 -39.67 -0.40 -1.51 16 18 C -0.13 -1.26 9.95 -39.31 -0.39 -1.65 16 19 C 0.13 1.64 6.27 -83.74 -0.53 1.11 16 20 N -0.67 -6.25 5.31 -9.89 -0.05 -6.30 16 21 C 0.51 6.06 6.69 -10.99 -0.07 5.99 16 22 O -0.48 -8.61 14.22 -14.02 -0.20 -8.81 16 23 C 0.06 0.54 3.85 -27.31 -0.11 0.43 16 24 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 25 C -0.15 -0.85 6.61 -25.20 -0.17 -1.02 16 26 C -0.16 -0.92 7.15 -24.72 -0.18 -1.10 16 27 C 0.04 0.31 7.73 38.22 0.30 0.60 16 28 O -0.35 -3.92 10.74 -54.81 -0.59 -4.51 16 29 C -0.07 -1.10 8.20 -38.98 -0.32 -1.41 16 30 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 31 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.39 7.25 6.57 -40.82 -0.27 6.98 16 35 H 0.13 1.59 6.40 -52.49 -0.34 1.25 16 36 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 38 H 0.41 1.96 8.82 -40.82 -0.36 1.60 16 39 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.09 0.56 7.70 -51.93 -0.40 0.16 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.10 0.63 8.14 -51.94 -0.42 0.21 16 44 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.15 2.80 6.02 -52.49 -0.32 2.48 16 LS Contribution 368.57 15.07 5.55 5.55 Total: -1.00 -37.98 368.57 -8.05 -46.03 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.02 Total: 6.26 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -3.18 Total: -1.82 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: 0.44 Total: -47.27 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.70 Total: -26.92 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.14 Total: 18.17 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.98 -8.05 -46.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194712727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.106 kcal (2) G-P(sol) polarization free energy of solvation -37.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds