Wall clock time and date at job start Tue Mar 31 2020 18:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47570 * 2 1 4 4 C 1.50695 * 109.47510 * 120.00688 * 2 1 3 5 5 H 1.08003 * 120.00179 * 119.99354 * 4 2 1 6 6 C 1.37878 * 120.00005 * 299.99691 * 4 2 1 7 7 N 1.31514 * 120.00254 * 179.97438 * 6 4 2 8 8 Si 1.86808 * 119.99786 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46785 * 90.00092 * 8 6 4 10 10 H 1.48496 * 109.46763 * 210.00014 * 8 6 4 11 11 H 1.48500 * 109.46781 * 329.99906 * 8 6 4 12 12 N 1.46500 * 109.46759 * 240.00516 * 2 1 3 13 13 C 1.34785 * 120.00218 * 84.99858 * 12 2 1 14 14 O 1.21547 * 119.99379 * 0.02562 * 13 12 2 15 15 C 1.47856 * 119.99977 * 179.97438 * 13 12 2 16 16 C 1.39612 * 120.11220 * 0.02562 * 15 13 12 17 17 C 1.37984 * 119.99788 * 180.02562 * 16 15 13 18 18 C 1.38258 * 120.21845 * 0.02562 * 17 16 15 19 19 C 1.38944 * 120.22567 * 359.97438 * 18 17 16 20 20 N 1.39958 * 120.00431 * 180.02562 * 19 18 17 21 21 C 1.34769 * 120.00276 * 146.76530 * 20 19 18 22 22 O 1.21284 * 120.00299 * 354.72345 * 21 20 19 23 23 C 1.50701 * 119.99866 * 174.73086 * 21 20 19 24 24 H 1.08992 * 109.99723 * 56.08312 * 23 21 20 25 25 C 1.54097 * 109.87543 * 294.99444 * 23 21 20 26 26 C 1.54813 * 104.19159 * 238.54545 * 25 23 21 27 27 C 1.55003 * 102.12469 * 339.10755 * 26 25 23 28 28 O 1.43745 * 109.87832 * 177.16595 * 23 21 20 29 29 C 1.38641 * 120.00054 * 0.27680 * 19 18 17 30 30 H 1.09005 * 109.46873 * 299.99460 * 1 2 3 31 31 H 1.08993 * 109.47362 * 59.99142 * 1 2 3 32 32 H 1.08999 * 109.47224 * 179.97438 * 1 2 3 33 33 H 0.97003 * 119.99902 * 180.02562 * 7 6 4 34 34 H 0.97002 * 120.00091 * 265.00176 * 12 2 1 35 35 H 1.08002 * 120.00457 * 359.97438 * 16 15 13 36 36 H 1.07993 * 119.89554 * 179.97438 * 17 16 15 37 37 H 1.08000 * 119.88401 * 179.97438 * 18 17 16 38 38 H 0.97008 * 119.99365 * 326.76516 * 20 19 18 39 39 H 1.09000 * 110.48648 * 119.87319 * 25 23 21 40 40 H 1.08999 * 110.60310 * 357.28339 * 25 23 21 41 41 H 1.08998 * 110.90189 * 97.31679 * 26 25 23 42 42 H 1.09002 * 110.91358 * 220.89191 * 26 25 23 43 43 H 1.08989 * 110.61857 * 155.53766 * 27 26 25 44 44 H 1.09003 * 110.61246 * 278.53940 * 27 26 25 45 45 H 1.07998 * 120.11042 * 179.72717 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5887 1.1311 6 6 1.6995 -0.2396 2.4827 7 7 2.1375 -0.8599 3.5564 8 14 0.6261 1.2797 2.6542 9 1 -0.8018 0.8743 2.6995 10 1 0.9776 1.9950 3.9072 11 1 0.8494 2.1772 1.4924 12 7 2.0183 -0.6905 -1.1963 13 6 2.1469 -0.0181 -2.3573 14 8 1.8583 1.1614 -2.4115 15 6 2.6403 -0.7149 -3.5644 16 6 2.9729 -2.0695 -3.5045 17 6 3.4336 -2.7173 -4.6323 18 6 3.5679 -2.0292 -5.8240 19 6 3.2395 -0.6810 -5.8940 20 7 3.3767 0.0109 -7.1029 21 6 2.5204 1.0048 -7.4115 22 8 1.5745 1.2366 -6.6887 23 6 2.7382 1.8279 -8.6549 24 1 2.7846 1.1782 -9.5287 25 6 4.0473 2.6311 -8.5289 26 6 3.6033 4.1065 -8.6789 27 6 2.2382 3.9642 -9.3992 28 8 1.6683 2.7758 -8.8071 29 6 2.7807 -0.0197 -4.7652 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 -0.3633 -1.0276 -0.0005 33 1 1.9029 -0.5288 4.4375 34 1 2.2489 -1.6317 -1.1528 35 1 2.8706 -2.6101 -2.5751 36 1 3.6908 -3.7650 -4.5840 37 1 3.9294 -2.5415 -6.7034 38 1 4.0883 -0.2250 -7.7186 39 1 4.7402 2.3584 -9.3250 40 1 4.5051 2.4677 -7.5534 41 1 3.4810 4.5770 -7.7033 42 1 4.3103 4.6652 -9.2923 43 1 1.6083 4.8317 -9.2028 44 1 2.3822 3.8277 -10.4710 45 1 2.5291 1.0293 -4.8165 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194712727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:52 Heat of formation + Delta-G solvation = -107.672884 kcal Electronic energy + Delta-G solvation = -27929.866911 eV Core-core repulsion = 23911.481520 eV Total energy + Delta-G solvation = -4018.385391 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.98215 -41.05702 -39.97958 -38.84167 -36.93551 -36.02138 -34.47916 -33.24265 -32.60174 -31.79457 -31.17826 -29.69461 -27.28293 -25.43795 -25.20383 -23.46267 -22.84264 -22.72275 -21.46630 -21.26683 -19.89093 -18.79134 -18.40331 -17.66302 -17.56999 -17.26234 -17.08747 -16.65382 -16.29458 -16.04283 -15.96962 -15.64444 -15.21822 -15.01195 -14.91089 -14.76183 -14.62880 -14.41356 -14.18965 -13.85544 -13.66245 -13.24122 -12.89212 -12.87376 -12.82304 -12.73292 -12.60697 -12.24108 -12.18951 -11.93180 -11.67371 -11.55864 -11.33948 -11.19017 -10.96274 -10.89181 -10.60628 -10.13879 -9.86332 -9.25895 -8.41381 -6.47051 -0.19386 0.23946 1.24099 1.32256 1.38303 1.42508 1.68276 1.91036 2.23264 2.30835 2.85590 2.94761 2.95289 3.35320 3.57862 3.72579 3.84131 3.90523 3.98236 4.11060 4.18813 4.22097 4.35047 4.37727 4.40529 4.46240 4.52488 4.63283 4.68513 4.74115 4.84443 4.87654 4.92986 4.95390 5.10359 5.16205 5.24272 5.26184 5.34322 5.38350 5.39208 5.54602 5.73526 5.91105 6.10474 6.34079 6.52662 6.75868 7.04500 7.14212 7.32518 8.73524 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016220 B = 0.002644 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.823639 B =10588.113345 C =11816.595074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.241 3.759 3 H 0.020 0.980 4 C -0.532 4.532 5 H 0.063 0.937 6 C 0.034 3.966 7 N -0.928 5.928 8 Si 0.934 3.066 9 H -0.258 1.258 10 H -0.288 1.288 11 H -0.269 1.269 12 N -0.690 5.690 13 C 0.540 3.460 14 O -0.598 6.598 15 C -0.133 4.133 16 C -0.101 4.101 17 C -0.094 4.094 18 C -0.100 4.100 19 C 0.129 3.871 20 N -0.650 5.650 21 C 0.498 3.502 22 O -0.556 6.556 23 C 0.065 3.935 24 H 0.139 0.861 25 C -0.143 4.143 26 C -0.156 4.156 27 C 0.038 3.962 28 O -0.393 6.393 29 C -0.092 4.092 30 H 0.044 0.956 31 H 0.038 0.962 32 H 0.069 0.931 33 H 0.272 0.728 34 H 0.409 0.591 35 H 0.143 0.857 36 H 0.178 0.822 37 H 0.180 0.820 38 H 0.435 0.565 39 H 0.134 0.866 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.117 0.883 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.891 -1.195 -32.841 34.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.136 3.864 3 H 0.037 0.963 4 C -0.570 4.570 5 H 0.081 0.919 6 C -0.166 4.166 7 N -0.567 5.567 8 Si 0.762 3.238 9 H -0.184 1.184 10 H -0.215 1.215 11 H -0.195 1.195 12 N -0.339 5.339 13 C 0.329 3.671 14 O -0.481 6.481 15 C -0.137 4.137 16 C -0.120 4.120 17 C -0.112 4.112 18 C -0.120 4.120 19 C 0.035 3.965 20 N -0.300 5.300 21 C 0.287 3.713 22 O -0.432 6.432 23 C 0.004 3.996 24 H 0.156 0.844 25 C -0.180 4.180 26 C -0.194 4.194 27 C -0.038 4.038 28 O -0.312 6.312 29 C -0.114 4.114 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.246 0.754 35 H 0.160 0.840 36 H 0.195 0.805 37 H 0.198 0.802 38 H 0.276 0.724 39 H 0.152 0.848 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.135 0.865 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.792 -0.184 -32.123 33.055 hybrid contribution -0.302 0.694 0.875 1.157 sum 7.489 0.510 -31.249 32.138 Atomic orbital electron populations 1.22358 0.97867 1.01900 0.99281 1.18823 0.91242 0.93190 0.83164 0.96258 1.21178 1.32582 1.13743 0.89534 0.91912 1.25473 0.96698 0.99108 0.95342 1.69951 1.46413 1.41719 0.98611 0.86076 0.80052 0.80575 0.77135 1.18358 1.21469 1.19459 1.45916 1.64867 1.14374 1.08753 1.18950 0.77553 0.86309 0.84327 1.90694 1.53403 1.18015 1.85941 1.19764 1.05318 0.95953 0.92645 1.21624 0.97394 0.91806 1.01174 1.21399 0.97323 1.01846 0.90603 1.21538 0.99867 0.90027 1.00556 1.17670 1.01664 0.92362 0.84814 1.43207 1.33197 1.34505 1.19076 1.21622 0.81353 0.80414 0.87949 1.90820 1.31459 1.68067 1.52820 1.22868 0.89129 0.92760 0.94804 0.84402 1.23050 0.95358 0.94385 1.05239 1.23188 0.97771 0.96794 1.01626 1.23924 0.94344 0.87140 0.98377 1.89019 1.31829 1.26970 1.83332 1.21024 0.99097 0.99908 0.91346 0.93709 0.94321 0.91186 0.91888 0.75411 0.83970 0.80466 0.80232 0.72368 0.84791 0.91003 0.92594 0.86506 0.88856 0.88664 0.87944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.45 8.97 71.98 0.65 -6.80 16 2 C 0.24 12.39 2.15 44.24 0.10 12.48 16 3 H 0.02 1.12 6.63 -2.39 -0.02 1.11 16 4 C -0.53 -30.03 9.31 25.60 0.24 -29.79 16 5 H 0.06 3.69 7.98 -2.91 -0.02 3.66 16 6 C 0.03 1.98 5.45 84.65 0.46 2.44 16 7 N -0.93 -56.24 13.96 21.45 0.30 -55.94 16 8 Si 0.93 46.52 24.37 68.60 1.67 48.19 16 9 H -0.26 -12.06 6.87 99.48 0.68 -11.38 16 10 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 11 H -0.27 -13.71 6.53 99.48 0.65 -13.06 16 12 N -0.69 -30.38 5.02 -448.97 -2.25 -32.63 16 13 C 0.54 24.37 7.74 86.79 0.67 25.04 16 14 O -0.60 -32.46 16.01 -3.86 -0.06 -32.52 16 15 C -0.13 -4.69 5.87 -20.11 -0.12 -4.81 16 16 C -0.10 -2.52 9.54 22.54 0.21 -2.30 16 17 C -0.09 -1.52 10.02 22.21 0.22 -1.29 16 18 C -0.10 -1.47 9.95 22.44 0.22 -1.25 16 19 C 0.13 2.97 6.27 38.11 0.24 3.21 16 20 N -0.65 -10.80 5.31 -303.61 -1.61 -12.41 16 21 C 0.50 11.99 6.69 87.66 0.59 12.57 16 22 O -0.56 -21.28 14.22 15.68 0.22 -21.06 16 23 C 0.07 0.99 3.85 30.22 0.12 1.11 16 24 H 0.14 0.93 8.14 -2.39 -0.02 0.91 16 25 C -0.14 -1.29 6.61 31.58 0.21 -1.08 16 26 C -0.16 -1.68 7.15 31.90 0.23 -1.45 16 27 C 0.04 0.49 7.73 72.67 0.56 1.06 16 28 O -0.39 -8.99 10.74 -130.26 -1.40 -10.39 16 29 C -0.09 -3.19 8.20 22.66 0.19 -3.01 16 30 H 0.04 2.14 3.27 -2.38 -0.01 2.14 16 31 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 33 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 34 H 0.41 15.30 6.57 -92.71 -0.61 14.69 16 35 H 0.14 3.17 6.40 -2.91 -0.02 3.15 16 36 H 0.18 1.40 8.06 -2.91 -0.02 1.38 16 37 H 0.18 0.87 8.06 -2.91 -0.02 0.84 16 38 H 0.44 2.37 8.82 -92.70 -0.82 1.56 16 39 H 0.13 0.05 8.14 -2.39 -0.02 0.03 16 40 H 0.07 0.86 7.70 -2.39 -0.02 0.84 16 41 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.10 4.42 6.02 -2.91 -0.02 4.41 16 Total: -1.00 -92.06 368.57 1.19 -90.88 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -0.46 Total: 19.77 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 4.78 Total: 6.11 kcal Atomic # 7 Polarization: -97.42 SS G_CDS: -3.57 Total: -100.99 kcal Atomic # 8 Polarization: -62.73 SS G_CDS: -1.24 Total: -63.96 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.67 Total: 48.19 kcal Total: -92.06 1.19 -90.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194712727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.795 kcal (2) G-P(sol) polarization free energy of solvation -92.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds