Wall clock time and date at job start Tue Mar 31 2020 18:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47443 * 2 1 4 4 C 1.50704 * 109.46636 * 240.00253 * 2 1 3 5 5 H 1.08006 * 119.99809 * 239.99559 * 4 2 1 6 6 C 1.37881 * 120.00168 * 60.27942 * 4 2 1 7 7 N 1.31507 * 119.99934 * 359.71821 * 6 4 2 8 8 Si 1.86797 * 119.99953 * 179.72412 * 6 4 2 9 9 H 1.48498 * 109.47401 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47278 * 120.00022 * 8 6 4 11 11 H 1.48503 * 109.46861 * 239.99868 * 8 6 4 12 12 N 1.46495 * 109.47381 * 120.00527 * 2 1 3 13 13 C 1.34777 * 119.99929 * 274.99893 * 12 2 1 14 14 O 1.21553 * 119.99794 * 359.97438 * 13 12 2 15 15 C 1.47865 * 120.00012 * 179.97438 * 13 12 2 16 16 C 1.39618 * 120.10946 * 359.72167 * 15 13 12 17 17 C 1.37977 * 119.98859 * 179.74599 * 16 15 13 18 18 C 1.38258 * 120.22834 * 0.53274 * 17 16 15 19 19 C 1.38946 * 120.21972 * 359.74443 * 18 17 16 20 20 N 1.39955 * 119.99685 * 180.02562 * 19 18 17 21 21 C 1.34780 * 120.00009 * 144.87693 * 20 19 18 22 22 O 1.21291 * 119.99821 * 4.61924 * 21 20 19 23 23 C 1.50699 * 120.00291 * 184.61705 * 21 20 19 24 24 H 1.09003 * 110.26920 * 305.63836 * 23 21 20 25 25 C 1.54939 * 110.30858 * 67.83397 * 23 21 20 26 26 C 1.55299 * 100.94404 * 155.36305 * 25 23 21 27 27 C 1.54384 * 102.25196 * 325.86294 * 26 25 23 28 28 O 1.43240 * 107.58492 * 21.35845 * 27 26 25 29 29 C 1.38637 * 120.00300 * 359.97438 * 19 18 17 30 30 H 1.09003 * 109.47471 * 59.99415 * 1 2 3 31 31 H 1.09001 * 109.47443 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46764 * 299.99642 * 1 2 3 33 33 H 0.97001 * 120.00212 * 180.02562 * 7 6 4 34 34 H 0.97006 * 120.00253 * 94.99571 * 12 2 1 35 35 H 1.07996 * 120.00469 * 0.02562 * 16 15 13 36 36 H 1.08009 * 119.88523 * 180.25658 * 17 16 15 37 37 H 1.07997 * 119.88587 * 179.72207 * 18 17 16 38 38 H 0.96995 * 120.00504 * 324.87493 * 20 19 18 39 39 H 1.09007 * 111.12378 * 273.27879 * 25 23 21 40 40 H 1.09001 * 111.13127 * 37.44225 * 25 23 21 41 41 H 1.09003 * 110.85198 * 207.67756 * 26 25 23 42 42 H 1.09000 * 110.85399 * 84.05401 * 26 25 23 43 43 H 1.08994 * 109.83342 * 261.84572 * 27 26 25 44 44 H 1.09004 * 109.90529 * 140.90977 * 27 26 25 45 45 H 1.08001 * 120.11222 * 180.02562 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.7038 -0.2359 -2.4828 7 7 0.9477 0.8333 -2.6034 8 14 2.3327 -1.1120 -4.0080 9 1 3.1571 -2.2792 -3.6040 10 1 1.1811 -1.5768 -4.8222 11 1 3.1605 -0.1760 -4.8105 12 7 2.0183 -0.6907 1.1960 13 6 2.1471 -0.0184 2.3571 14 8 1.8584 1.1611 2.4116 15 6 2.6395 -0.7157 3.5644 16 6 2.9662 -2.0718 3.5058 17 6 3.4304 -2.7187 4.6326 18 6 3.5634 -2.0313 5.8248 19 6 3.2355 -0.6829 5.8949 20 7 3.3724 0.0086 7.1039 21 6 3.7549 1.3009 7.1016 22 8 3.8994 1.8887 6.0505 23 6 4.0032 2.0157 8.4048 24 1 3.1302 1.9341 9.0525 25 6 5.2541 1.4320 9.1085 26 6 5.6882 2.6376 9.9859 27 6 5.3081 3.8424 9.0985 28 8 4.3183 3.3963 8.1641 29 6 2.7736 -0.0222 4.7669 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 0.7164 1.1669 -3.4844 34 1 2.2490 -1.6319 1.1524 35 1 2.8599 -2.6133 2.5774 36 1 3.6866 -3.7669 4.5843 37 1 3.9231 -2.5442 6.7045 38 1 3.1919 -0.4422 7.9436 39 1 4.9925 0.5717 9.7248 40 1 6.0274 1.1740 8.3850 41 1 6.7622 2.6159 10.1711 42 1 5.1322 2.6555 10.9233 43 1 6.1877 4.1994 8.5631 44 1 4.9002 4.6434 9.7151 45 1 2.5186 1.0259 4.8193 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194712757.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:02 Heat of formation + Delta-G solvation = -85.845825 kcal Electronic energy + Delta-G solvation = -27709.845096 eV Core-core repulsion = 23692.406197 eV Total energy + Delta-G solvation = -4017.438899 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.00498 -39.76495 -38.80018 -37.61689 -34.94619 -34.74706 -32.69127 -32.37173 -31.04364 -30.88603 -29.26534 -28.38674 -25.21732 -24.49025 -23.88680 -22.45499 -22.18548 -21.04008 -20.54645 -19.48973 -18.39508 -17.95177 -17.09254 -16.36792 -16.22574 -15.90423 -15.57032 -15.32454 -15.20316 -15.04714 -14.49370 -14.17868 -13.94650 -13.82564 -13.68389 -13.52839 -13.02980 -12.68356 -12.46991 -12.35194 -12.24226 -11.89385 -11.84184 -11.67334 -11.48544 -11.43914 -11.05564 -10.92818 -10.69960 -10.49077 -10.26932 -10.24870 -10.19601 -9.65591 -9.06756 -8.98642 -8.85116 -8.51335 -8.26885 -7.84156 -6.07832 -4.16943 0.97855 1.34559 2.30916 2.47936 3.26956 3.33770 3.34969 3.37441 3.49684 3.84839 4.06233 4.17821 4.26757 4.31930 4.41604 4.58404 4.59653 4.75165 4.85721 4.93209 5.09418 5.16545 5.21985 5.24500 5.30517 5.32751 5.34192 5.50254 5.55622 5.58260 5.92060 6.16201 6.28079 6.39695 6.46811 6.55617 6.88380 6.96236 7.03002 7.11998 7.20631 7.51232 7.62029 7.74558 7.89382 7.97297 8.19595 8.70928 8.83050 9.17054 9.50317 10.98346 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019945 B = 0.002319 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.516940 B =12070.700356 C =12826.692223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.050 0.950 4 C -0.532 4.532 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.702 5.702 13 C 0.540 3.460 14 O -0.544 6.544 15 C -0.101 4.101 16 C -0.101 4.101 17 C -0.110 4.110 18 C -0.129 4.129 19 C 0.129 3.871 20 N -0.671 5.671 21 C 0.504 3.496 22 O -0.484 6.484 23 C 0.068 3.932 24 H 0.100 0.900 25 C -0.146 4.146 26 C -0.153 4.153 27 C 0.047 3.953 28 O -0.351 6.351 29 C -0.067 4.067 30 H 0.090 0.910 31 H 0.026 0.974 32 H 0.015 0.985 33 H 0.264 0.736 34 H 0.388 0.612 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.409 0.591 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.070 -5.643 28.520 30.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.068 0.932 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.350 5.350 13 C 0.325 3.675 14 O -0.423 6.423 15 C -0.105 4.105 16 C -0.121 4.121 17 C -0.128 4.128 18 C -0.150 4.150 19 C 0.036 3.964 20 N -0.319 5.319 21 C 0.290 3.710 22 O -0.355 6.355 23 C 0.007 3.993 24 H 0.118 0.882 25 C -0.184 4.184 26 C -0.191 4.191 27 C -0.030 4.030 28 O -0.269 6.269 29 C -0.088 4.088 30 H 0.109 0.891 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.074 0.926 34 H 0.221 0.779 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.245 0.755 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.814 -4.012 27.465 28.836 hybrid contribution 0.445 -1.290 -0.248 1.387 sum 8.259 -5.303 27.217 28.933 Atomic orbital electron populations 1.22074 0.98345 0.99125 1.00968 1.18793 0.91115 0.94122 0.79845 0.93195 1.21244 1.32422 1.13117 0.90272 0.92012 1.24898 0.94868 0.94966 0.99070 1.69916 1.35956 1.22396 1.23750 0.86382 0.78580 0.79485 0.82566 1.19746 1.20901 1.20891 1.46471 1.64665 1.13498 1.10329 1.18200 0.79110 0.86842 0.83366 1.90751 1.51024 1.15525 1.85000 1.20251 1.01432 0.93996 0.94855 1.21422 0.97989 0.93612 0.99031 1.20846 1.00041 0.99963 0.91984 1.20947 1.02106 0.93038 0.98917 1.17567 1.00813 0.91640 0.86352 1.43303 1.68637 1.11844 1.08068 1.20690 0.77150 0.81593 0.91581 1.90847 1.47245 1.64900 1.32471 1.22779 0.99455 0.83890 0.93185 0.88207 1.23271 0.96827 0.99055 0.99263 1.23133 1.03121 0.93833 0.99018 1.23249 0.92098 0.96681 0.90940 1.88588 1.59342 1.22689 1.56297 1.21429 0.95168 1.01768 0.90403 0.89100 0.95440 0.96580 0.92635 0.77878 0.85133 0.85149 0.85630 0.75532 0.88822 0.89512 0.89402 0.89980 0.90783 0.90726 0.83077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.26 37.16 0.34 -3.45 16 2 C 0.26 7.02 2.56 -69.09 -0.18 6.84 16 3 H 0.05 1.54 7.58 -51.93 -0.39 1.15 16 4 C -0.53 -14.51 8.72 -34.44 -0.30 -14.81 16 5 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 6 C 0.07 1.80 5.31 -17.82 -0.09 1.70 16 7 N -0.88 -25.51 11.33 55.43 0.63 -24.88 16 8 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 9 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.70 -15.70 5.02 -55.87 -0.28 -15.98 16 13 C 0.54 12.19 7.74 -12.32 -0.10 12.09 16 14 O -0.54 -14.60 16.01 5.32 0.09 -14.51 16 15 C -0.10 -1.82 5.87 -104.99 -0.62 -2.44 16 16 C -0.10 -1.40 9.54 -39.16 -0.37 -1.78 16 17 C -0.11 -1.18 10.02 -39.67 -0.40 -1.58 16 18 C -0.13 -1.31 9.96 -39.31 -0.39 -1.70 16 19 C 0.13 1.66 6.29 -83.74 -0.53 1.13 16 20 N -0.67 -6.48 5.34 -9.89 -0.05 -6.53 16 21 C 0.50 6.26 7.02 -10.98 -0.08 6.18 16 22 O -0.48 -8.90 13.98 -13.78 -0.19 -9.09 16 23 C 0.07 0.59 3.86 -26.86 -0.10 0.49 16 24 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 25 C -0.15 -0.78 6.56 -24.49 -0.16 -0.94 16 26 C -0.15 -0.68 7.02 -24.79 -0.17 -0.86 16 27 C 0.05 0.35 7.79 37.88 0.30 0.64 16 28 O -0.35 -4.16 10.61 -54.56 -0.58 -4.73 16 29 C -0.07 -1.16 8.24 -38.98 -0.32 -1.48 16 30 H 0.09 2.53 6.08 -51.93 -0.32 2.22 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.39 7.39 6.57 -40.82 -0.27 7.12 16 35 H 0.13 1.62 6.40 -52.49 -0.34 1.29 16 36 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 37 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.41 2.05 8.82 -40.82 -0.36 1.69 16 39 H 0.09 0.22 8.14 -51.92 -0.42 -0.20 16 40 H 0.09 0.57 8.05 -51.93 -0.42 0.15 16 41 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.15 3.10 5.81 -52.49 -0.30 2.80 16 LS Contribution 375.52 15.07 5.66 5.66 Total: -1.00 -37.62 375.52 -9.09 -46.71 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -6.16 Total: 7.27 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -3.17 Total: 0.04 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: 0.29 Total: -47.39 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.69 Total: -28.34 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.62 -9.09 -46.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194712757.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.133 kcal (2) G-P(sol) polarization free energy of solvation -37.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds