Wall clock time and date at job start Tue Mar 31 2020 18:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47443 * 2 1 4 4 C 1.50704 * 109.46636 * 240.00253 * 2 1 3 5 5 H 1.08006 * 119.99809 * 239.99559 * 4 2 1 6 6 C 1.37881 * 120.00168 * 60.27942 * 4 2 1 7 7 N 1.31507 * 119.99934 * 359.71821 * 6 4 2 8 8 Si 1.86797 * 119.99953 * 179.72412 * 6 4 2 9 9 H 1.48498 * 109.47401 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47278 * 120.00022 * 8 6 4 11 11 H 1.48503 * 109.46861 * 239.99868 * 8 6 4 12 12 N 1.46495 * 109.47381 * 120.00527 * 2 1 3 13 13 C 1.34777 * 119.99929 * 274.99893 * 12 2 1 14 14 O 1.21553 * 119.99794 * 359.97438 * 13 12 2 15 15 C 1.47865 * 120.00012 * 179.97438 * 13 12 2 16 16 C 1.39618 * 120.10946 * 359.72167 * 15 13 12 17 17 C 1.37977 * 119.98859 * 179.74599 * 16 15 13 18 18 C 1.38258 * 120.22834 * 0.53274 * 17 16 15 19 19 C 1.38946 * 120.21972 * 359.74443 * 18 17 16 20 20 N 1.39955 * 119.99685 * 180.02562 * 19 18 17 21 21 C 1.34780 * 120.00009 * 144.87693 * 20 19 18 22 22 O 1.21291 * 119.99821 * 4.61924 * 21 20 19 23 23 C 1.50699 * 120.00291 * 184.61705 * 21 20 19 24 24 H 1.09003 * 110.26920 * 305.63836 * 23 21 20 25 25 C 1.54939 * 110.30858 * 67.83397 * 23 21 20 26 26 C 1.55299 * 100.94404 * 155.36305 * 25 23 21 27 27 C 1.54384 * 102.25196 * 325.86294 * 26 25 23 28 28 O 1.43240 * 107.58492 * 21.35845 * 27 26 25 29 29 C 1.38637 * 120.00300 * 359.97438 * 19 18 17 30 30 H 1.09003 * 109.47471 * 59.99415 * 1 2 3 31 31 H 1.09001 * 109.47443 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46764 * 299.99642 * 1 2 3 33 33 H 0.97001 * 120.00212 * 180.02562 * 7 6 4 34 34 H 0.97006 * 120.00253 * 94.99571 * 12 2 1 35 35 H 1.07996 * 120.00469 * 0.02562 * 16 15 13 36 36 H 1.08009 * 119.88523 * 180.25658 * 17 16 15 37 37 H 1.07997 * 119.88587 * 179.72207 * 18 17 16 38 38 H 0.96995 * 120.00504 * 324.87493 * 20 19 18 39 39 H 1.09007 * 111.12378 * 273.27879 * 25 23 21 40 40 H 1.09001 * 111.13127 * 37.44225 * 25 23 21 41 41 H 1.09003 * 110.85198 * 207.67756 * 26 25 23 42 42 H 1.09000 * 110.85399 * 84.05401 * 26 25 23 43 43 H 1.08994 * 109.83342 * 261.84572 * 27 26 25 44 44 H 1.09004 * 109.90529 * 140.90977 * 27 26 25 45 45 H 1.08001 * 120.11222 * 180.02562 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.7038 -0.2359 -2.4828 7 7 0.9477 0.8333 -2.6034 8 14 2.3327 -1.1120 -4.0080 9 1 3.1571 -2.2792 -3.6040 10 1 1.1811 -1.5768 -4.8222 11 1 3.1605 -0.1760 -4.8105 12 7 2.0183 -0.6907 1.1960 13 6 2.1471 -0.0184 2.3571 14 8 1.8584 1.1611 2.4116 15 6 2.6395 -0.7157 3.5644 16 6 2.9662 -2.0718 3.5058 17 6 3.4304 -2.7187 4.6326 18 6 3.5634 -2.0313 5.8248 19 6 3.2355 -0.6829 5.8949 20 7 3.3724 0.0086 7.1039 21 6 3.7549 1.3009 7.1016 22 8 3.8994 1.8887 6.0505 23 6 4.0032 2.0157 8.4048 24 1 3.1302 1.9341 9.0525 25 6 5.2541 1.4320 9.1085 26 6 5.6882 2.6376 9.9859 27 6 5.3081 3.8424 9.0985 28 8 4.3183 3.3963 8.1641 29 6 2.7736 -0.0222 4.7669 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 0.7164 1.1669 -3.4844 34 1 2.2490 -1.6319 1.1524 35 1 2.8599 -2.6133 2.5774 36 1 3.6866 -3.7669 4.5843 37 1 3.9231 -2.5442 6.7045 38 1 3.1919 -0.4422 7.9436 39 1 4.9925 0.5717 9.7248 40 1 6.0274 1.1740 8.3850 41 1 6.7622 2.6159 10.1711 42 1 5.1322 2.6555 10.9233 43 1 6.1877 4.1994 8.5631 44 1 4.9002 4.6434 9.7151 45 1 2.5186 1.0259 4.8193 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194712757.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:01 Heat of formation + Delta-G solvation = -114.487458 kcal Electronic energy + Delta-G solvation = -27711.087091 eV Core-core repulsion = 23692.406197 eV Total energy + Delta-G solvation = -4018.680893 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.94680 -40.98759 -39.97632 -38.83378 -36.80036 -36.00556 -34.40971 -33.23342 -32.33739 -31.74475 -30.70678 -29.65708 -27.39090 -25.34686 -25.22466 -23.36114 -22.82258 -22.62483 -21.47669 -21.25428 -19.81140 -18.77665 -18.25972 -17.71008 -17.36903 -17.09569 -16.94556 -16.54717 -16.27032 -16.17870 -15.93921 -15.72765 -15.31477 -14.85677 -14.61924 -14.55368 -14.48154 -14.20183 -13.88288 -13.63701 -13.13196 -13.02219 -12.92185 -12.83627 -12.76415 -12.75420 -12.57409 -12.31929 -12.30526 -12.12500 -11.86389 -11.55347 -11.14869 -11.07049 -10.90879 -10.64091 -10.51482 -10.06352 -9.76996 -9.26717 -8.19856 -6.38486 -0.16373 0.26636 1.38190 1.43545 1.44645 1.57447 1.68461 1.95440 2.30918 2.52930 2.87230 2.91942 3.10516 3.33768 3.57024 3.79307 3.88863 3.93292 4.07075 4.10734 4.14521 4.22258 4.32276 4.44231 4.50846 4.68841 4.74707 4.78174 4.86281 4.86556 4.89340 4.96601 5.03137 5.18687 5.19290 5.28234 5.34652 5.39861 5.42149 5.55130 5.62594 5.84584 5.87027 5.95112 6.03929 6.36183 6.68120 6.86713 7.06555 7.27424 7.45359 8.87422 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019945 B = 0.002319 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.516940 B =12070.700356 C =12826.692223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.267 3.733 3 H -0.008 1.008 4 C -0.546 4.546 5 H 0.077 0.923 6 C 0.010 3.990 7 N -0.919 5.919 8 Si 0.980 3.020 9 H -0.256 1.256 10 H -0.276 1.276 11 H -0.285 1.285 12 N -0.693 5.693 13 C 0.533 3.467 14 O -0.605 6.605 15 C -0.135 4.135 16 C -0.099 4.099 17 C -0.094 4.094 18 C -0.097 4.097 19 C 0.126 3.874 20 N -0.648 5.648 21 C 0.497 3.503 22 O -0.559 6.559 23 C 0.066 3.934 24 H 0.134 0.866 25 C -0.137 4.137 26 C -0.142 4.142 27 C 0.034 3.966 28 O -0.401 6.401 29 C -0.097 4.097 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.006 0.994 33 H 0.266 0.734 34 H 0.406 0.594 35 H 0.144 0.856 36 H 0.181 0.819 37 H 0.183 0.817 38 H 0.436 0.564 39 H 0.137 0.863 40 H 0.070 0.930 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.062 0.938 44 H 0.086 0.914 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.834 -10.642 31.640 34.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.164 3.836 3 H 0.010 0.990 4 C -0.584 4.584 5 H 0.095 0.905 6 C -0.190 4.190 7 N -0.558 5.558 8 Si 0.804 3.196 9 H -0.180 1.180 10 H -0.201 1.201 11 H -0.211 1.211 12 N -0.342 5.342 13 C 0.322 3.678 14 O -0.488 6.488 15 C -0.138 4.138 16 C -0.118 4.118 17 C -0.112 4.112 18 C -0.117 4.117 19 C 0.032 3.968 20 N -0.297 5.297 21 C 0.286 3.714 22 O -0.435 6.435 23 C 0.005 3.995 24 H 0.151 0.849 25 C -0.175 4.175 26 C -0.179 4.179 27 C -0.042 4.042 28 O -0.320 6.320 29 C -0.118 4.118 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.026 0.974 33 H 0.075 0.925 34 H 0.243 0.757 35 H 0.162 0.838 36 H 0.198 0.802 37 H 0.201 0.799 38 H 0.277 0.723 39 H 0.155 0.845 40 H 0.089 0.911 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.080 0.920 44 H 0.104 0.896 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.583 -9.097 30.664 33.390 hybrid contribution -0.085 0.293 -1.103 1.145 sum 9.498 -8.803 29.561 32.274 Atomic orbital electron populations 1.21890 0.98003 0.99744 0.99447 1.18434 0.91415 0.91814 0.81921 0.98995 1.21542 1.32800 1.13580 0.90448 0.90453 1.25912 0.94845 0.95600 1.02613 1.70079 1.37051 1.23968 1.24673 0.85181 0.78119 0.78450 0.77867 1.17985 1.20123 1.21110 1.46167 1.64618 1.14188 1.09273 1.19064 0.77748 0.86336 0.84683 1.90702 1.53638 1.18383 1.86079 1.19849 1.05360 0.95949 0.92686 1.21630 0.97512 0.91469 1.01237 1.21418 0.97356 1.01937 0.90477 1.21556 0.98371 0.91072 1.00707 1.17698 1.00201 0.92954 0.85949 1.43139 1.67183 1.11077 1.08319 1.21630 0.75595 0.82068 0.92151 1.90836 1.50627 1.66635 1.35368 1.23096 1.02472 0.82612 0.91276 0.84905 1.23333 0.94428 1.00659 0.99066 1.23145 1.04380 0.91423 0.98954 1.23481 0.91100 0.98644 0.90997 1.88548 1.60554 1.24650 1.58232 1.21191 0.97946 1.00071 0.92613 0.91199 0.93495 0.97449 0.92475 0.75688 0.83830 0.80184 0.79936 0.72297 0.84518 0.91139 0.87976 0.87506 0.91977 0.89626 0.87972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.23 9.26 71.98 0.67 -6.57 16 2 C 0.27 15.15 2.56 44.25 0.11 15.26 16 3 H -0.01 -0.53 7.58 -2.39 -0.02 -0.55 16 4 C -0.55 -30.33 8.72 25.60 0.22 -30.11 16 5 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 6 C 0.01 0.56 5.31 84.66 0.45 1.01 16 7 N -0.92 -55.13 11.33 21.45 0.24 -54.88 16 8 Si 0.98 43.27 29.54 68.60 2.03 45.30 16 9 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 10 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 N -0.69 -32.62 5.02 -448.96 -2.25 -34.87 16 13 C 0.53 26.11 7.74 86.79 0.67 26.79 16 14 O -0.60 -36.25 16.01 -3.88 -0.06 -36.32 16 15 C -0.13 -5.05 5.87 -20.10 -0.12 -5.17 16 16 C -0.10 -2.55 9.54 22.54 0.21 -2.34 16 17 C -0.09 -1.52 10.02 22.21 0.22 -1.29 16 18 C -0.10 -1.44 9.96 22.44 0.22 -1.22 16 19 C 0.13 3.03 6.29 38.11 0.24 3.27 16 20 N -0.65 -11.30 5.34 -303.59 -1.62 -12.92 16 21 C 0.50 12.64 7.02 87.66 0.62 13.26 16 22 O -0.56 -22.69 13.98 15.41 0.22 -22.47 16 23 C 0.07 1.08 3.86 30.51 0.12 1.19 16 24 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 25 C -0.14 -1.03 6.56 32.05 0.21 -0.82 16 26 C -0.14 -0.85 7.02 31.85 0.22 -0.63 16 27 C 0.03 0.50 7.79 72.45 0.56 1.06 16 28 O -0.40 -9.95 10.61 -130.50 -1.38 -11.34 16 29 C -0.10 -3.58 8.24 22.66 0.19 -3.40 16 30 H 0.07 4.12 6.08 -2.39 -0.01 4.10 16 31 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 34 H 0.41 15.64 6.57 -92.70 -0.61 15.03 16 35 H 0.14 3.21 6.40 -2.91 -0.02 3.19 16 36 H 0.18 1.30 8.06 -2.91 -0.02 1.27 16 37 H 0.18 0.77 8.06 -2.91 -0.02 0.75 16 38 H 0.44 2.52 8.82 -92.71 -0.82 1.70 16 39 H 0.14 -0.14 8.14 -2.38 -0.02 -0.16 16 40 H 0.07 0.79 8.05 -2.39 -0.02 0.77 16 41 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 42 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 43 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 45 H 0.10 4.79 5.81 -2.91 -0.02 4.78 16 Total: -1.00 -96.33 375.52 1.60 -94.73 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: -0.39 Total: 22.47 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 4.83 Total: 10.31 kcal Atomic # 7 Polarization: -99.05 SS G_CDS: -3.63 Total: -102.68 kcal Atomic # 8 Polarization: -68.89 SS G_CDS: -1.23 Total: -70.13 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -96.33 1.60 -94.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194712757.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.755 kcal (2) G-P(sol) polarization free energy of solvation -96.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds