Wall clock time and date at job start Tue Mar 31 2020 18:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35973 * 117.00139 * 2 1 4 4 C 1.38554 * 120.08077 * 0.02562 * 3 2 1 5 5 C 1.38248 * 120.01202 * 179.97438 * 4 3 2 6 6 C 1.38277 * 120.17827 * 359.97438 * 5 4 3 7 7 C 1.38195 * 120.16963 * 359.74871 * 6 5 4 8 8 C 1.38731 * 119.97841 * 0.50673 * 7 6 5 9 9 N 1.40125 * 120.08706 * 179.76937 * 8 7 6 10 10 C 1.46761 * 124.34856 * 269.44898 * 9 8 7 11 11 C 1.54661 * 105.38172 * 162.85456 * 10 9 8 12 12 H 1.08998 * 111.19120 * 267.59440 * 11 10 9 13 13 C 1.50699 * 110.82189 * 143.77965 * 11 10 9 14 14 O 1.21281 * 120.00215 * 6.34530 * 13 11 10 15 15 N 1.34780 * 119.99780 * 186.35415 * 13 11 10 16 16 C 1.46499 * 119.99613 * 180.02562 * 15 13 11 17 17 H 1.09007 * 109.46910 * 324.98826 * 16 15 13 18 18 C 1.52997 * 109.47778 * 84.99427 * 16 15 13 19 19 C 1.50706 * 109.46596 * 204.99613 * 16 15 13 20 20 H 1.07996 * 120.00352 * 359.97438 * 19 16 15 21 21 C 1.37877 * 119.99677 * 179.97438 * 19 16 15 22 22 N 1.31514 * 120.00390 * 359.97438 * 21 19 16 23 23 Si 1.86798 * 119.99910 * 179.97438 * 21 19 16 24 24 H 1.48504 * 109.47313 * 89.99772 * 23 21 19 25 25 H 1.48497 * 109.47218 * 209.99650 * 23 21 19 26 26 H 1.48498 * 109.47233 * 329.99647 * 23 21 19 27 27 C 1.54625 * 101.68432 * 25.76535 * 11 10 9 28 28 C 1.34420 * 124.34898 * 89.74470 * 9 8 7 29 29 O 1.21296 * 124.93955 * 0.39348 * 28 9 8 30 30 H 1.09005 * 109.47105 * 60.00660 * 1 2 3 31 31 H 1.09002 * 109.47496 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47464 * 300.00441 * 1 2 3 33 33 H 1.07991 * 119.99292 * 0.02562 * 4 3 2 34 34 H 1.07995 * 119.90526 * 180.02562 * 5 4 3 35 35 H 1.08001 * 119.91447 * 180.02562 * 6 5 4 36 36 H 1.07999 * 120.01294 * 180.27559 * 7 6 5 37 37 H 1.08994 * 110.24845 * 281.98234 * 10 9 8 38 38 H 1.08999 * 110.24612 * 43.98538 * 10 9 8 39 39 H 0.96994 * 119.99853 * 359.97438 * 15 13 11 40 40 H 1.08998 * 109.47279 * 179.97438 * 18 16 15 41 41 H 1.09002 * 109.47071 * 300.00292 * 18 16 15 42 42 H 1.09006 * 109.46804 * 59.99211 * 18 16 15 43 43 H 0.96998 * 120.00692 * 179.97438 * 22 21 19 44 44 H 1.08996 * 110.48826 * 216.31103 * 27 11 10 45 45 H 1.09003 * 110.48486 * 93.66269 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2933 2.3746 0.0005 5 6 1.9224 3.6056 0.0011 6 6 3.3032 3.6806 0.0016 7 6 4.0614 2.5253 0.0069 8 6 3.4372 1.2864 0.0010 9 7 4.2039 0.1135 0.0014 10 6 4.6525 -0.5830 -1.2100 11 6 5.7925 -1.5197 -0.7463 12 1 6.7641 -1.0350 -0.8416 13 6 5.7628 -2.8184 -1.5102 14 8 4.9901 -2.9611 -2.4340 15 7 6.5949 -3.8215 -1.1666 16 6 6.5664 -5.0838 -1.9095 17 1 5.5434 -5.3020 -2.2160 18 6 7.4561 -4.9665 -3.1487 19 6 7.0752 -6.1962 -1.0293 20 1 7.3888 -5.9841 -0.0178 21 6 7.1403 -7.4848 -1.5153 22 7 6.7580 -7.7433 -2.7468 23 14 7.7716 -8.8636 -0.4245 24 1 6.6360 -9.4661 0.3189 25 1 8.4198 -9.9023 -1.2648 26 1 8.7609 -8.3186 0.5396 27 6 5.4290 -1.7433 0.7399 28 6 4.6181 -0.5215 1.1114 29 8 4.3769 -0.1663 2.2458 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 0.2148 2.3195 0.0014 34 1 1.3339 4.5111 0.0019 35 1 3.7902 4.6446 0.0024 36 1 5.1397 2.5868 0.0118 37 1 3.8342 -1.1629 -1.6367 38 1 5.0284 0.1340 -1.9400 39 1 7.2131 -3.7072 -0.4279 40 1 7.4352 -5.9059 -3.7012 41 1 7.0881 -4.1619 -3.7854 42 1 8.4791 -4.7482 -2.8422 43 1 6.8042 -8.6498 -3.0888 44 1 6.3313 -1.8018 1.3486 45 1 4.8310 -2.6474 0.8545 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194714353.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:25 Heat of formation + Delta-G solvation = -74.541262 kcal Electronic energy + Delta-G solvation = -28428.296361 eV Core-core repulsion = 24411.347665 eV Total energy + Delta-G solvation = -4016.948696 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.16785 -39.90932 -38.69065 -37.56977 -36.19460 -34.83018 -33.31773 -32.32013 -30.51028 -29.71975 -28.59641 -27.61661 -27.43458 -25.29230 -23.88172 -22.72319 -22.40043 -20.79442 -19.93335 -19.40623 -18.32006 -17.63614 -17.26236 -16.50743 -16.21076 -15.91399 -15.41926 -15.34312 -15.22045 -14.81523 -14.67137 -14.41195 -14.05305 -13.94789 -13.61103 -13.35798 -12.93134 -12.81234 -12.68017 -12.43335 -12.37040 -11.93414 -11.80743 -11.47622 -11.39155 -11.36663 -11.27393 -11.08095 -10.98644 -10.77534 -10.33722 -10.26247 -10.01220 -9.22892 -9.10476 -9.06535 -8.89757 -8.57890 -8.41939 -7.98592 -6.14912 -4.24328 0.93128 1.14853 2.55947 2.81846 3.06503 3.21663 3.23878 3.30729 3.32377 3.39676 3.92282 4.31325 4.35179 4.54152 4.56036 4.60778 4.81943 4.90448 4.92394 4.97630 5.02324 5.09660 5.17777 5.24245 5.28874 5.40733 5.48638 5.55573 5.65676 5.81038 5.93173 5.98325 6.08949 6.18282 6.35719 6.63643 6.78599 6.92128 6.98211 7.10932 7.18195 7.38857 7.50668 7.65880 7.87226 8.11545 8.18243 8.58629 8.73398 9.02803 9.43281 10.91035 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020917 B = 0.002554 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.280087 B =10958.967340 C =11041.929136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.304 6.304 3 C 0.138 3.862 4 C -0.206 4.206 5 C -0.075 4.075 6 C -0.152 4.152 7 C -0.071 4.071 8 C 0.114 3.886 9 N -0.571 5.571 10 C 0.124 3.876 11 C -0.124 4.124 12 H 0.114 0.886 13 C 0.513 3.487 14 O -0.548 6.548 15 N -0.703 5.703 16 C 0.264 3.736 17 H 0.049 0.951 18 C -0.147 4.147 19 C -0.534 4.534 20 H 0.062 0.938 21 C 0.066 3.934 22 N -0.883 5.883 23 Si 0.901 3.099 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.273 1.273 27 C -0.142 4.142 28 C 0.528 3.472 29 O -0.526 6.526 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.055 0.945 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.390 0.610 40 H 0.090 0.910 41 H 0.015 0.985 42 H 0.027 0.973 43 H 0.265 0.735 44 H 0.112 0.888 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.627 21.153 4.207 22.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.217 6.217 3 C 0.091 3.909 4 C -0.225 4.225 5 C -0.094 4.094 6 C -0.171 4.171 7 C -0.090 4.090 8 C 0.023 3.977 9 N -0.302 5.302 10 C 0.002 3.998 11 C -0.146 4.146 12 H 0.132 0.868 13 C 0.296 3.704 14 O -0.427 6.427 15 N -0.350 5.350 16 C 0.162 3.838 17 H 0.067 0.933 18 C -0.206 4.206 19 C -0.573 4.573 20 H 0.080 0.920 21 C -0.137 4.137 22 N -0.521 5.521 23 Si 0.729 3.271 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.198 1.198 27 C -0.182 4.182 28 C 0.317 3.683 29 O -0.402 6.402 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.073 0.927 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.114 0.886 38 H 0.101 0.899 39 H 0.223 0.777 40 H 0.109 0.891 41 H 0.034 0.966 42 H 0.046 0.954 43 H 0.075 0.925 44 H 0.130 0.870 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.262 20.857 4.001 22.788 hybrid contribution 0.391 -0.616 0.800 1.083 sum -7.871 20.241 4.801 22.242 Atomic orbital electron populations 1.23111 0.78236 1.04367 1.01152 1.86204 1.21412 1.26137 1.87908 1.19382 0.91522 0.84975 0.95065 1.21176 1.00167 0.91934 1.09251 1.21001 0.94687 0.96968 0.96701 1.20947 0.93779 0.98070 1.04335 1.21191 1.00437 0.90551 0.96828 1.16708 0.86383 0.86086 1.08508 1.45477 1.52464 1.24062 1.08180 1.22095 0.97325 0.94527 0.85840 1.22332 1.00812 0.96337 0.95117 0.86750 1.19855 0.81501 0.84652 0.84350 1.90678 1.39876 1.81773 1.30405 1.46515 1.37720 1.15659 1.35139 1.18777 0.97486 0.78170 0.89318 0.93273 1.22081 0.97866 1.01599 0.99054 1.21211 1.44818 0.92267 0.98982 0.91994 1.24883 0.94978 0.98655 0.95165 1.69896 1.46607 1.20739 1.14839 0.86450 0.78990 0.81481 0.80193 1.20552 1.21088 1.19813 1.22325 1.02203 0.98101 0.95565 1.20949 0.79076 0.84241 0.83994 1.90713 1.58806 1.69623 1.21008 0.92519 0.87946 0.92655 0.85001 0.85451 0.85314 0.84963 0.88637 0.89889 0.77729 0.89125 0.96603 0.95420 0.92549 0.87011 0.86738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.30 -4.10 10.24 -19.65 -0.20 -4.30 16 3 C 0.14 1.77 6.70 -39.07 -0.26 1.51 16 4 C -0.21 -2.02 9.04 -39.46 -0.36 -2.38 16 5 C -0.08 -0.64 10.04 -39.56 -0.40 -1.03 16 6 C -0.15 -1.34 10.04 -39.58 -0.40 -1.74 16 7 C -0.07 -0.77 9.96 -39.41 -0.39 -1.16 16 8 C 0.11 1.52 5.40 -83.49 -0.45 1.07 16 9 N -0.57 -7.99 2.70 -112.02 -0.30 -8.29 16 10 C 0.12 1.65 6.59 -3.03 -0.02 1.63 16 11 C -0.12 -1.63 3.56 -90.04 -0.32 -1.95 16 12 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 13 C 0.51 9.29 7.04 -10.98 -0.08 9.22 16 14 O -0.55 -12.13 15.23 5.56 0.08 -12.04 16 15 N -0.70 -13.56 5.02 -54.93 -0.28 -13.84 16 16 C 0.26 6.45 2.56 -69.08 -0.18 6.27 16 17 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 18 C -0.15 -3.54 9.26 37.16 0.34 -3.19 16 19 C -0.53 -13.74 8.73 -34.44 -0.30 -14.04 16 20 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 21 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 22 N -0.88 -24.46 11.32 55.43 0.63 -23.83 16 23 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 C -0.14 -1.85 6.37 -26.74 -0.17 -2.02 16 28 C 0.53 8.14 7.98 -10.86 -0.09 8.05 16 29 O -0.53 -9.83 17.71 5.54 0.10 -9.73 16 30 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 31 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 33 H 0.13 0.98 6.30 -52.49 -0.33 0.65 16 34 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 35 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 36 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.10 1.50 7.07 -51.93 -0.37 1.13 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.39 6.42 8.54 -40.82 -0.35 6.08 16 40 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 41 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.11 1.61 7.89 -51.93 -0.41 1.20 16 LS Contribution 379.30 15.07 5.72 5.72 Total: -1.00 -33.80 379.30 -7.75 -41.55 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -6.31 Total: 6.32 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -2.17 Total: 3.12 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 0.05 Total: -45.96 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.02 Total: -26.08 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.80 -7.75 -41.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194714353.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.994 kcal (2) G-P(sol) polarization free energy of solvation -33.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds