Wall clock time and date at job start Tue Mar 31 2020 18:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35973 * 117.00139 * 2 1 4 4 C 1.38554 * 120.08077 * 0.02562 * 3 2 1 5 5 C 1.38248 * 120.01202 * 179.97438 * 4 3 2 6 6 C 1.38277 * 120.17827 * 359.97438 * 5 4 3 7 7 C 1.38195 * 120.16963 * 359.74871 * 6 5 4 8 8 C 1.38731 * 119.97841 * 0.50673 * 7 6 5 9 9 N 1.40125 * 120.08706 * 179.76937 * 8 7 6 10 10 C 1.46761 * 124.34856 * 269.44898 * 9 8 7 11 11 C 1.54661 * 105.38172 * 162.85456 * 10 9 8 12 12 H 1.08998 * 111.19120 * 267.59440 * 11 10 9 13 13 C 1.50699 * 110.82189 * 143.77965 * 11 10 9 14 14 O 1.21281 * 120.00215 * 6.34530 * 13 11 10 15 15 N 1.34780 * 119.99780 * 186.35415 * 13 11 10 16 16 C 1.46499 * 119.99613 * 180.02562 * 15 13 11 17 17 H 1.09007 * 109.46910 * 324.98826 * 16 15 13 18 18 C 1.52997 * 109.47778 * 84.99427 * 16 15 13 19 19 C 1.50706 * 109.46596 * 204.99613 * 16 15 13 20 20 H 1.07996 * 120.00352 * 359.97438 * 19 16 15 21 21 C 1.37877 * 119.99677 * 179.97438 * 19 16 15 22 22 N 1.31514 * 120.00390 * 359.97438 * 21 19 16 23 23 Si 1.86798 * 119.99910 * 179.97438 * 21 19 16 24 24 H 1.48504 * 109.47313 * 89.99772 * 23 21 19 25 25 H 1.48497 * 109.47218 * 209.99650 * 23 21 19 26 26 H 1.48498 * 109.47233 * 329.99647 * 23 21 19 27 27 C 1.54625 * 101.68432 * 25.76535 * 11 10 9 28 28 C 1.34420 * 124.34898 * 89.74470 * 9 8 7 29 29 O 1.21296 * 124.93955 * 0.39348 * 28 9 8 30 30 H 1.09005 * 109.47105 * 60.00660 * 1 2 3 31 31 H 1.09002 * 109.47496 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47464 * 300.00441 * 1 2 3 33 33 H 1.07991 * 119.99292 * 0.02562 * 4 3 2 34 34 H 1.07995 * 119.90526 * 180.02562 * 5 4 3 35 35 H 1.08001 * 119.91447 * 180.02562 * 6 5 4 36 36 H 1.07999 * 120.01294 * 180.27559 * 7 6 5 37 37 H 1.08994 * 110.24845 * 281.98234 * 10 9 8 38 38 H 1.08999 * 110.24612 * 43.98538 * 10 9 8 39 39 H 0.96994 * 119.99853 * 359.97438 * 15 13 11 40 40 H 1.08998 * 109.47279 * 179.97438 * 18 16 15 41 41 H 1.09002 * 109.47071 * 300.00292 * 18 16 15 42 42 H 1.09006 * 109.46804 * 59.99211 * 18 16 15 43 43 H 0.96998 * 120.00692 * 179.97438 * 22 21 19 44 44 H 1.08996 * 110.48826 * 216.31103 * 27 11 10 45 45 H 1.09003 * 110.48486 * 93.66269 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2933 2.3746 0.0005 5 6 1.9224 3.6056 0.0011 6 6 3.3032 3.6806 0.0016 7 6 4.0614 2.5253 0.0069 8 6 3.4372 1.2864 0.0010 9 7 4.2039 0.1135 0.0014 10 6 4.6525 -0.5830 -1.2100 11 6 5.7925 -1.5197 -0.7463 12 1 6.7641 -1.0350 -0.8416 13 6 5.7628 -2.8184 -1.5102 14 8 4.9901 -2.9611 -2.4340 15 7 6.5949 -3.8215 -1.1666 16 6 6.5664 -5.0838 -1.9095 17 1 5.5434 -5.3020 -2.2160 18 6 7.4561 -4.9665 -3.1487 19 6 7.0752 -6.1962 -1.0293 20 1 7.3888 -5.9841 -0.0178 21 6 7.1403 -7.4848 -1.5153 22 7 6.7580 -7.7433 -2.7468 23 14 7.7716 -8.8636 -0.4245 24 1 6.6360 -9.4661 0.3189 25 1 8.4198 -9.9023 -1.2648 26 1 8.7609 -8.3186 0.5396 27 6 5.4290 -1.7433 0.7399 28 6 4.6181 -0.5215 1.1114 29 8 4.3769 -0.1663 2.2458 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 0.2148 2.3195 0.0014 34 1 1.3339 4.5111 0.0019 35 1 3.7902 4.6446 0.0024 36 1 5.1397 2.5868 0.0118 37 1 3.8342 -1.1629 -1.6367 38 1 5.0284 0.1340 -1.9400 39 1 7.2131 -3.7072 -0.4279 40 1 7.4352 -5.9059 -3.7012 41 1 7.0881 -4.1619 -3.7854 42 1 8.4791 -4.7482 -2.8422 43 1 6.8042 -8.6498 -3.0888 44 1 6.3313 -1.8018 1.3486 45 1 4.8310 -2.6474 0.8545 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194714353.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:25 Heat of formation + Delta-G solvation = -97.087433 kcal Electronic energy + Delta-G solvation = -28429.274037 eV Core-core repulsion = 24411.347665 eV Total energy + Delta-G solvation = -4017.926372 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.22218 -40.94145 -40.10593 -38.39496 -37.45544 -36.62004 -34.55763 -33.98554 -31.32100 -31.02754 -29.95990 -28.76912 -28.17041 -27.30898 -25.10955 -23.74072 -23.16548 -22.47204 -21.02012 -20.92603 -19.26137 -19.04304 -18.25294 -17.96258 -17.23896 -17.11371 -16.92614 -16.60974 -16.18332 -16.09707 -15.81367 -15.59635 -15.35582 -14.85793 -14.81607 -14.67957 -14.40387 -14.03398 -13.96818 -13.66096 -13.58171 -13.08555 -12.95298 -12.88231 -12.77666 -12.67801 -12.48475 -12.38558 -12.22828 -12.13559 -12.10559 -12.08335 -11.24493 -11.07307 -10.70965 -10.55182 -10.01765 -9.94250 -9.72903 -9.22875 -8.15651 -6.32309 0.15587 0.38389 1.38312 1.46381 1.47099 1.57202 1.73977 1.80621 2.30141 2.35537 2.54597 2.68739 3.15246 3.18354 3.42573 3.82398 3.85264 3.85965 3.93798 4.19963 4.24015 4.27001 4.30006 4.36900 4.44233 4.56376 4.58776 4.63643 4.71533 4.77027 4.80819 4.90853 4.97715 5.13866 5.23271 5.29455 5.46156 5.47318 5.55857 5.63429 5.72817 5.78500 5.90714 5.93252 6.13468 6.35838 6.75982 6.95450 7.05173 7.34729 7.55124 8.90465 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020917 B = 0.002554 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.280087 B =10958.967340 C =11041.929136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.341 6.341 3 C 0.110 3.890 4 C -0.208 4.208 5 C -0.070 4.070 6 C -0.149 4.149 7 C -0.079 4.079 8 C 0.071 3.929 9 N -0.562 5.562 10 C 0.126 3.874 11 C -0.103 4.103 12 H 0.157 0.843 13 C 0.514 3.486 14 O -0.592 6.592 15 N -0.698 5.698 16 C 0.270 3.730 17 H -0.001 1.001 18 C -0.134 4.134 19 C -0.544 4.544 20 H 0.075 0.925 21 C 0.015 3.985 22 N -0.918 5.918 23 Si 0.968 3.032 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.259 1.259 27 C -0.135 4.135 28 C 0.523 3.477 29 O -0.566 6.566 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.067 0.933 33 H 0.153 0.847 34 H 0.163 0.837 35 H 0.160 0.840 36 H 0.143 0.857 37 H 0.066 0.934 38 H 0.106 0.894 39 H 0.408 0.592 40 H 0.064 0.936 41 H 0.015 0.985 42 H 0.042 0.958 43 H 0.264 0.736 44 H 0.142 0.858 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.733 23.452 5.404 24.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.063 3.937 4 C -0.227 4.227 5 C -0.087 4.087 6 C -0.167 4.167 7 C -0.098 4.098 8 C -0.019 4.019 9 N -0.291 5.291 10 C 0.005 3.995 11 C -0.124 4.124 12 H 0.175 0.825 13 C 0.300 3.700 14 O -0.473 6.473 15 N -0.347 5.347 16 C 0.167 3.833 17 H 0.017 0.983 18 C -0.193 4.193 19 C -0.583 4.583 20 H 0.093 0.907 21 C -0.185 4.185 22 N -0.556 5.556 23 Si 0.793 3.207 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.183 1.183 27 C -0.175 4.175 28 C 0.313 3.687 29 O -0.445 6.445 30 H 0.091 0.909 31 H 0.124 0.876 32 H 0.086 0.914 33 H 0.171 0.829 34 H 0.181 0.819 35 H 0.178 0.822 36 H 0.161 0.839 37 H 0.084 0.916 38 H 0.124 0.876 39 H 0.243 0.757 40 H 0.083 0.917 41 H 0.034 0.966 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.160 0.840 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.361 23.195 5.203 24.885 hybrid contribution -0.016 -1.232 0.375 1.288 sum -7.377 21.963 5.578 23.830 Atomic orbital electron populations 1.23324 0.76418 1.05165 1.02546 1.86136 1.23587 1.27317 1.88388 1.19706 0.91842 0.85680 0.96477 1.21502 1.01237 0.91558 1.08442 1.21475 0.95000 0.97631 0.94638 1.21365 0.94087 0.98618 1.02635 1.21416 1.01282 0.90315 0.96765 1.17197 0.86983 0.86555 1.11143 1.45472 1.51788 1.24189 1.07672 1.22035 0.96452 0.94834 0.86215 1.22230 1.02825 0.93321 0.94068 0.82509 1.20589 0.79954 0.85683 0.83816 1.90668 1.41337 1.82741 1.32578 1.46219 1.38666 1.14407 1.35367 1.18347 0.94582 0.80372 0.90009 0.98308 1.21898 0.98602 1.00183 0.98649 1.21568 1.44322 0.92748 0.99614 0.90684 1.25759 0.95215 1.01223 0.96346 1.70047 1.47775 1.21178 1.16604 0.85398 0.78465 0.78321 0.78476 1.20648 1.21106 1.18282 1.22329 1.02955 0.96490 0.95694 1.21263 0.79056 0.84624 0.83752 1.90680 1.60585 1.70756 1.22434 0.90862 0.87594 0.91394 0.82939 0.81943 0.82228 0.83914 0.91595 0.87584 0.75669 0.91735 0.96557 0.93866 0.92638 0.83977 0.88096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.46 16 2 O -0.34 -9.53 10.24 -93.24 -0.95 -10.48 16 3 C 0.11 2.82 6.70 22.60 0.15 2.97 16 4 C -0.21 -3.76 9.04 22.35 0.20 -3.56 16 5 C -0.07 -0.96 10.04 22.28 0.22 -0.74 16 6 C -0.15 -2.18 10.04 22.27 0.22 -1.95 16 7 C -0.08 -1.58 9.96 22.38 0.22 -1.36 16 8 C 0.07 1.88 5.40 38.19 0.21 2.09 16 9 N -0.56 -15.67 2.70 -626.90 -1.69 -17.36 16 10 C 0.13 3.34 6.59 86.90 0.57 3.91 16 11 C -0.10 -2.54 3.56 -10.42 -0.04 -2.58 16 12 H 0.16 2.66 8.14 -2.39 -0.02 2.64 16 13 C 0.51 18.53 7.04 87.66 0.62 19.15 16 14 O -0.59 -27.02 15.23 -3.03 -0.05 -27.07 16 15 N -0.70 -26.57 5.02 -446.08 -2.24 -28.80 16 16 C 0.27 13.44 2.56 44.25 0.11 13.56 16 17 H 0.00 -0.06 7.58 -2.38 -0.02 -0.08 16 18 C -0.13 -6.54 9.26 71.98 0.67 -5.87 16 19 C -0.54 -27.91 8.73 25.60 0.22 -27.69 16 20 H 0.08 3.57 7.74 -2.91 -0.02 3.54 16 21 C 0.01 0.77 5.30 84.65 0.45 1.22 16 22 N -0.92 -51.95 11.32 21.45 0.24 -51.70 16 23 Si 0.97 41.49 29.54 68.60 2.03 43.52 16 24 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 26 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 27 C -0.13 -3.36 6.37 30.59 0.19 -3.16 16 28 C 0.52 16.03 7.98 87.90 0.70 16.73 16 29 O -0.57 -21.35 17.71 -3.08 -0.05 -21.40 16 30 H 0.07 0.99 7.67 -2.38 -0.02 0.97 16 31 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.07 0.97 7.66 -2.39 -0.02 0.96 16 33 H 0.15 1.95 6.30 -2.92 -0.02 1.93 16 34 H 0.16 1.07 8.06 -2.91 -0.02 1.04 16 35 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 36 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 37 H 0.07 2.16 7.07 -2.39 -0.02 2.15 16 38 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.41 12.64 8.54 -92.71 -0.79 11.85 16 40 H 0.06 3.49 6.07 -2.39 -0.01 3.47 16 41 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 43 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 44 H 0.14 2.67 8.14 -2.39 -0.02 2.65 16 45 H 0.10 2.84 7.89 -2.39 -0.02 2.82 16 Total: -1.00 -77.28 379.30 3.35 -73.93 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: 0.23 Total: 25.22 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: 5.84 Total: 14.16 kcal Atomic # 7 Polarization: -94.18 SS G_CDS: -3.69 Total: -97.87 kcal Atomic # 8 Polarization: -57.90 SS G_CDS: -1.06 Total: -58.96 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -77.28 3.35 -73.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194714353.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.159 kcal (2) G-P(sol) polarization free energy of solvation -77.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds