Wall clock time and date at job start Tue Mar 31 2020 18:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35975 * 117.00274 * 2 1 4 4 C 1.38548 * 120.08042 * 0.02562 * 3 2 1 5 5 C 1.38252 * 120.01224 * 179.97438 * 4 3 2 6 6 C 1.38274 * 120.17719 * 0.02562 * 5 4 3 7 7 C 1.38194 * 120.16777 * 0.02562 * 6 5 4 8 8 C 1.38718 * 119.98629 * 359.97438 * 7 6 5 9 9 N 1.40119 * 120.09306 * 180.29855 * 8 7 6 10 10 C 1.46759 * 124.35051 * 269.44798 * 9 8 7 11 11 C 1.54657 * 105.38432 * 162.85207 * 10 9 8 12 12 H 1.09006 * 111.22575 * 267.58111 * 11 10 9 13 13 C 1.50702 * 110.82261 * 143.77805 * 11 10 9 14 14 O 1.21279 * 119.99823 * 6.35128 * 13 11 10 15 15 N 1.34779 * 119.99942 * 186.35230 * 13 11 10 16 16 C 1.46500 * 119.99809 * 180.02562 * 15 13 11 17 17 H 1.09001 * 109.47326 * 34.99940 * 16 15 13 18 18 C 1.52991 * 109.46882 * 274.99570 * 16 15 13 19 19 C 1.50703 * 109.46852 * 154.99777 * 16 15 13 20 20 H 1.07995 * 120.00366 * 359.97438 * 19 16 15 21 21 C 1.37882 * 119.99645 * 179.97438 * 19 16 15 22 22 N 1.31517 * 119.99939 * 0.02562 * 21 19 16 23 23 Si 1.86798 * 119.99955 * 179.97438 * 21 19 16 24 24 H 1.48506 * 109.46853 * 59.99679 * 23 21 19 25 25 H 1.48492 * 109.47299 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47158 * 300.00028 * 23 21 19 27 27 C 1.54626 * 101.68462 * 25.76701 * 11 10 9 28 28 C 1.34418 * 124.34944 * 89.74667 * 9 8 7 29 29 O 1.21299 * 124.94186 * 0.39014 * 28 9 8 30 30 H 1.08996 * 109.47388 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47108 * 300.00819 * 1 2 3 32 32 H 1.09007 * 109.46783 * 60.00248 * 1 2 3 33 33 H 1.07996 * 119.99430 * 359.97438 * 4 3 2 34 34 H 1.07995 * 119.90948 * 180.02562 * 5 4 3 35 35 H 1.08008 * 119.91487 * 180.02562 * 6 5 4 36 36 H 1.08007 * 120.00658 * 180.02562 * 7 6 5 37 37 H 1.08998 * 110.24964 * 281.98695 * 10 9 8 38 38 H 1.09010 * 110.24614 * 43.98433 * 10 9 8 39 39 H 0.96996 * 119.99932 * 359.97438 * 15 13 11 40 40 H 1.09001 * 109.47442 * 300.00299 * 18 16 15 41 41 H 1.09008 * 109.47272 * 60.00348 * 18 16 15 42 42 H 1.09000 * 109.47125 * 180.02562 * 18 16 15 43 43 H 0.97003 * 119.99444 * 180.02562 * 22 21 19 44 44 H 1.09003 * 110.49111 * 216.30750 * 27 11 10 45 45 H 1.09003 * 110.48280 * 93.66566 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2934 2.3746 0.0005 5 6 1.9226 3.6056 0.0011 6 6 3.3033 3.6806 0.0005 7 6 4.0615 2.5252 -0.0011 8 6 3.4374 1.2863 -0.0016 9 7 4.2039 0.1134 0.0031 10 6 4.6518 -0.5879 -1.2058 11 6 5.7920 -1.5228 -0.7390 12 1 6.7640 -1.0391 -0.8368 13 6 5.7618 -2.8246 -1.4976 14 8 4.9886 -2.9709 -2.4203 15 7 6.5941 -3.8263 -1.1504 16 6 6.5651 -5.0916 -1.8882 17 1 6.3542 -4.8946 -2.9393 18 6 5.4740 -5.9944 -1.3095 19 6 7.9019 -5.7763 -1.7639 20 1 8.6939 -5.3149 -1.1928 21 6 8.1137 -6.9918 -2.3792 22 7 7.1493 -7.5535 -3.0751 23 14 9.7708 -7.8402 -2.2258 24 1 10.0591 -8.1079 -0.7938 25 1 9.7410 -9.1234 -2.9725 26 1 10.8295 -6.9640 -2.7885 27 6 5.4295 -1.7404 0.7483 28 6 4.6187 -0.5171 1.1154 29 8 4.3782 -0.1573 2.2486 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 0.2149 2.3195 0.0005 34 1 1.3341 4.5111 0.0019 35 1 3.7904 4.6445 0.0014 36 1 5.1398 2.5867 -0.0011 37 1 3.8332 -1.1695 -1.6297 38 1 5.0274 0.1261 -1.9389 39 1 7.2128 -3.7091 -0.4126 40 1 5.6849 -6.1914 -0.2584 41 1 4.5070 -5.4992 -1.3995 42 1 5.4527 -6.9360 -1.8581 43 1 7.2982 -8.4088 -3.5077 44 1 6.3321 -1.7966 1.3568 45 1 4.8316 -2.6441 0.8669 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194714366.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:30 Heat of formation + Delta-G solvation = -74.526530 kcal Electronic energy + Delta-G solvation = -28438.667007 eV Core-core repulsion = 24421.718949 eV Total energy + Delta-G solvation = -4016.948057 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.17758 -39.91749 -38.69468 -37.57782 -36.20334 -34.83082 -33.32434 -32.32121 -30.51588 -29.72168 -28.61345 -27.61898 -27.44564 -25.28736 -23.88145 -22.72144 -22.40722 -20.83832 -19.93315 -19.38317 -18.32699 -17.62988 -17.26523 -16.51646 -16.26815 -15.93436 -15.38798 -15.32108 -15.24270 -14.82409 -14.66352 -14.39712 -14.13498 -13.96083 -13.61833 -13.20159 -12.91648 -12.89427 -12.79839 -12.42547 -12.40617 -11.93931 -11.68406 -11.54127 -11.39763 -11.37416 -11.28801 -11.09741 -10.97311 -10.75513 -10.36891 -10.25768 -10.02301 -9.23301 -9.10873 -9.07001 -8.90455 -8.57813 -8.42618 -7.98694 -6.14877 -4.24479 0.92591 1.14292 2.54384 2.80926 3.05391 3.21712 3.24519 3.29906 3.30870 3.39094 3.91946 4.30919 4.34264 4.53459 4.55206 4.60153 4.81324 4.89643 4.91159 4.96959 5.01470 5.09049 5.17779 5.23606 5.27503 5.40234 5.48377 5.54444 5.64672 5.79154 5.92565 5.97645 6.08424 6.17848 6.35113 6.62674 6.79327 6.93015 6.97123 7.11378 7.17199 7.39061 7.50777 7.65721 7.87400 8.11808 8.16900 8.58653 8.73031 9.02757 9.43009 10.90984 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023740 B = 0.002514 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.142730 B =11134.382330 C =11539.792051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.305 6.305 3 C 0.138 3.862 4 C -0.206 4.206 5 C -0.075 4.075 6 C -0.152 4.152 7 C -0.071 4.071 8 C 0.114 3.886 9 N -0.571 5.571 10 C 0.124 3.876 11 C -0.124 4.124 12 H 0.115 0.885 13 C 0.513 3.487 14 O -0.548 6.548 15 N -0.703 5.703 16 C 0.265 3.735 17 H 0.049 0.951 18 C -0.148 4.148 19 C -0.535 4.535 20 H 0.061 0.939 21 C 0.067 3.933 22 N -0.883 5.883 23 Si 0.902 3.098 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.276 1.276 27 C -0.141 4.141 28 C 0.529 3.471 29 O -0.526 6.526 30 H 0.102 0.898 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.390 0.610 40 H 0.027 0.973 41 H 0.015 0.985 42 H 0.090 0.910 43 H 0.265 0.735 44 H 0.112 0.888 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.463 20.229 5.807 23.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.217 6.217 3 C 0.090 3.910 4 C -0.225 4.225 5 C -0.094 4.094 6 C -0.171 4.171 7 C -0.090 4.090 8 C 0.023 3.977 9 N -0.301 5.301 10 C 0.002 3.998 11 C -0.146 4.146 12 H 0.133 0.867 13 C 0.296 3.704 14 O -0.427 6.427 15 N -0.350 5.350 16 C 0.163 3.837 17 H 0.067 0.933 18 C -0.206 4.206 19 C -0.574 4.574 20 H 0.079 0.921 21 C -0.137 4.137 22 N -0.521 5.521 23 Si 0.729 3.271 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.202 1.202 27 C -0.182 4.182 28 C 0.317 3.683 29 O -0.402 6.402 30 H 0.120 0.880 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.223 0.777 40 H 0.046 0.954 41 H 0.034 0.966 42 H 0.109 0.891 43 H 0.075 0.925 44 H 0.130 0.870 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.125 19.918 5.617 23.039 hybrid contribution 0.905 -0.348 0.348 1.030 sum -9.220 19.570 5.965 22.440 Atomic orbital electron populations 1.23110 0.78244 1.04344 1.01166 1.86201 1.21406 1.26158 1.87930 1.19378 0.91512 0.84964 0.95097 1.21175 1.00162 0.91935 1.09256 1.21003 0.94689 0.96970 0.96689 1.20950 0.93779 0.98078 1.04297 1.21193 1.00454 0.90552 0.96803 1.16704 0.86379 0.86082 1.08523 1.45473 1.52439 1.24050 1.08182 1.22100 0.97318 0.94487 0.85907 1.22335 1.00874 0.96372 0.95039 0.86673 1.19852 0.81633 0.84561 0.84304 1.90677 1.39623 1.82095 1.30335 1.46515 1.37461 1.15648 1.35412 1.18767 0.94948 0.77700 0.92270 0.93273 1.22085 0.96168 1.02812 0.99573 1.21174 0.97280 1.05108 1.33818 0.92065 1.24887 0.97188 0.96893 0.94708 1.69892 1.31963 1.17742 1.32461 0.86502 0.83573 0.78730 0.78255 1.20139 1.21147 1.20168 1.22320 1.02166 0.98034 0.95651 1.20939 0.79069 0.84280 0.83969 1.90714 1.58834 1.69487 1.21141 0.87964 0.92655 0.92513 0.85002 0.85445 0.85301 0.84947 0.88644 0.89845 0.77733 0.95393 0.96626 0.89119 0.92487 0.87000 0.86888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.30 -4.06 10.24 -19.66 -0.20 -4.26 16 3 C 0.14 1.76 6.70 -39.07 -0.26 1.49 16 4 C -0.21 -2.01 9.04 -39.46 -0.36 -2.36 16 5 C -0.08 -0.63 10.04 -39.56 -0.40 -1.03 16 6 C -0.15 -1.34 10.04 -39.58 -0.40 -1.73 16 7 C -0.07 -0.77 9.96 -39.42 -0.39 -1.16 16 8 C 0.11 1.51 5.40 -83.49 -0.45 1.06 16 9 N -0.57 -7.94 2.70 -112.02 -0.30 -8.24 16 10 C 0.12 1.65 6.59 -3.03 -0.02 1.63 16 11 C -0.12 -1.63 3.56 -90.05 -0.32 -1.95 16 12 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 13 C 0.51 9.30 7.04 -10.98 -0.08 9.22 16 14 O -0.55 -12.13 15.23 5.56 0.08 -12.05 16 15 N -0.70 -13.57 5.02 -54.93 -0.28 -13.85 16 16 C 0.26 6.47 2.56 -69.09 -0.18 6.29 16 17 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 18 C -0.15 -3.57 9.26 37.15 0.34 -3.23 16 19 C -0.54 -13.75 8.73 -34.44 -0.30 -14.05 16 20 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 21 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 22 N -0.88 -24.44 11.32 55.43 0.63 -23.81 16 23 Si 0.90 20.27 29.54 -169.99 -5.02 15.24 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 C -0.14 -1.81 6.37 -26.74 -0.17 -1.98 16 28 C 0.53 8.05 7.98 -10.86 -0.09 7.96 16 29 O -0.53 -9.73 17.71 5.54 0.10 -9.63 16 30 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 32 H 0.06 0.39 7.66 -51.92 -0.40 -0.01 16 33 H 0.13 0.97 6.30 -52.49 -0.33 0.64 16 34 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 36 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 37 H 0.10 1.49 7.07 -51.93 -0.37 1.12 16 38 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 39 H 0.39 6.43 8.54 -40.82 -0.35 6.08 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.01 0.35 8.14 -51.92 -0.42 -0.07 16 42 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 43 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.11 1.54 7.89 -51.93 -0.41 1.13 16 LS Contribution 379.29 15.07 5.72 5.72 Total: -1.00 -33.75 379.29 -7.75 -41.50 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -6.31 Total: 6.34 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -2.17 Total: 3.04 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.05 Total: -45.90 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.02 Total: -25.94 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.75 -7.75 -41.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194714366.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.030 kcal (2) G-P(sol) polarization free energy of solvation -33.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds