Wall clock time and date at job start Tue Mar 31 2020 18:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35975 * 117.00274 * 2 1 4 4 C 1.38548 * 120.08042 * 0.02562 * 3 2 1 5 5 C 1.38252 * 120.01224 * 179.97438 * 4 3 2 6 6 C 1.38274 * 120.17719 * 0.02562 * 5 4 3 7 7 C 1.38194 * 120.16777 * 0.02562 * 6 5 4 8 8 C 1.38718 * 119.98629 * 359.97438 * 7 6 5 9 9 N 1.40119 * 120.09306 * 180.29855 * 8 7 6 10 10 C 1.46759 * 124.35051 * 269.44798 * 9 8 7 11 11 C 1.54657 * 105.38432 * 162.85207 * 10 9 8 12 12 H 1.09006 * 111.22575 * 267.58111 * 11 10 9 13 13 C 1.50702 * 110.82261 * 143.77805 * 11 10 9 14 14 O 1.21279 * 119.99823 * 6.35128 * 13 11 10 15 15 N 1.34779 * 119.99942 * 186.35230 * 13 11 10 16 16 C 1.46500 * 119.99809 * 180.02562 * 15 13 11 17 17 H 1.09001 * 109.47326 * 34.99940 * 16 15 13 18 18 C 1.52991 * 109.46882 * 274.99570 * 16 15 13 19 19 C 1.50703 * 109.46852 * 154.99777 * 16 15 13 20 20 H 1.07995 * 120.00366 * 359.97438 * 19 16 15 21 21 C 1.37882 * 119.99645 * 179.97438 * 19 16 15 22 22 N 1.31517 * 119.99939 * 0.02562 * 21 19 16 23 23 Si 1.86798 * 119.99955 * 179.97438 * 21 19 16 24 24 H 1.48506 * 109.46853 * 59.99679 * 23 21 19 25 25 H 1.48492 * 109.47299 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47158 * 300.00028 * 23 21 19 27 27 C 1.54626 * 101.68462 * 25.76701 * 11 10 9 28 28 C 1.34418 * 124.34944 * 89.74667 * 9 8 7 29 29 O 1.21299 * 124.94186 * 0.39014 * 28 9 8 30 30 H 1.08996 * 109.47388 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47108 * 300.00819 * 1 2 3 32 32 H 1.09007 * 109.46783 * 60.00248 * 1 2 3 33 33 H 1.07996 * 119.99430 * 359.97438 * 4 3 2 34 34 H 1.07995 * 119.90948 * 180.02562 * 5 4 3 35 35 H 1.08008 * 119.91487 * 180.02562 * 6 5 4 36 36 H 1.08007 * 120.00658 * 180.02562 * 7 6 5 37 37 H 1.08998 * 110.24964 * 281.98695 * 10 9 8 38 38 H 1.09010 * 110.24614 * 43.98433 * 10 9 8 39 39 H 0.96996 * 119.99932 * 359.97438 * 15 13 11 40 40 H 1.09001 * 109.47442 * 300.00299 * 18 16 15 41 41 H 1.09008 * 109.47272 * 60.00348 * 18 16 15 42 42 H 1.09000 * 109.47125 * 180.02562 * 18 16 15 43 43 H 0.97003 * 119.99444 * 180.02562 * 22 21 19 44 44 H 1.09003 * 110.49111 * 216.30750 * 27 11 10 45 45 H 1.09003 * 110.48280 * 93.66566 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2934 2.3746 0.0005 5 6 1.9226 3.6056 0.0011 6 6 3.3033 3.6806 0.0005 7 6 4.0615 2.5252 -0.0011 8 6 3.4374 1.2863 -0.0016 9 7 4.2039 0.1134 0.0031 10 6 4.6518 -0.5879 -1.2058 11 6 5.7920 -1.5228 -0.7390 12 1 6.7640 -1.0391 -0.8368 13 6 5.7618 -2.8246 -1.4976 14 8 4.9886 -2.9709 -2.4203 15 7 6.5941 -3.8263 -1.1504 16 6 6.5651 -5.0916 -1.8882 17 1 6.3542 -4.8946 -2.9393 18 6 5.4740 -5.9944 -1.3095 19 6 7.9019 -5.7763 -1.7639 20 1 8.6939 -5.3149 -1.1928 21 6 8.1137 -6.9918 -2.3792 22 7 7.1493 -7.5535 -3.0751 23 14 9.7708 -7.8402 -2.2258 24 1 10.0591 -8.1079 -0.7938 25 1 9.7410 -9.1234 -2.9725 26 1 10.8295 -6.9640 -2.7885 27 6 5.4295 -1.7404 0.7483 28 6 4.6187 -0.5171 1.1154 29 8 4.3782 -0.1573 2.2486 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 0.2149 2.3195 0.0005 34 1 1.3341 4.5111 0.0019 35 1 3.7904 4.6445 0.0014 36 1 5.1398 2.5867 -0.0011 37 1 3.8332 -1.1695 -1.6297 38 1 5.0274 0.1261 -1.9389 39 1 7.2128 -3.7091 -0.4126 40 1 5.6849 -6.1914 -0.2584 41 1 4.5070 -5.4992 -1.3995 42 1 5.4527 -6.9360 -1.8581 43 1 7.2982 -8.4088 -3.5077 44 1 6.3321 -1.7966 1.3568 45 1 4.8316 -2.6441 0.8669 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194714366.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:29 Heat of formation + Delta-G solvation = -96.976350 kcal Electronic energy + Delta-G solvation = -28439.640504 eV Core-core repulsion = 24421.718949 eV Total energy + Delta-G solvation = -4017.921555 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.22385 -40.94245 -40.10579 -38.39399 -37.45442 -36.62293 -34.55797 -33.98184 -31.32215 -31.03250 -29.97307 -28.76299 -28.16867 -27.31014 -25.10316 -23.73103 -23.16603 -22.51724 -20.99447 -20.92715 -19.26100 -19.01739 -18.25219 -18.00752 -17.28418 -17.07903 -16.89559 -16.58144 -16.18736 -16.10939 -15.81018 -15.61340 -15.39147 -14.82331 -14.75490 -14.60647 -14.38479 -14.29430 -13.96506 -13.58996 -13.54859 -13.08843 -13.00785 -12.82802 -12.72387 -12.67760 -12.52978 -12.37050 -12.24069 -12.13646 -12.12990 -12.08253 -11.24302 -11.08501 -10.70799 -10.54323 -10.01450 -9.94343 -9.73654 -9.22899 -8.14937 -6.31949 0.15486 0.38327 1.38418 1.47812 1.49227 1.56857 1.73723 1.80757 2.30128 2.35750 2.54881 2.68733 3.15748 3.18386 3.42097 3.82248 3.85054 3.85715 3.93742 4.19958 4.24203 4.27247 4.30344 4.36767 4.44136 4.56065 4.58713 4.63961 4.71164 4.76695 4.79459 4.90483 4.95353 5.12934 5.23123 5.29330 5.46009 5.46471 5.55585 5.63320 5.71797 5.78264 5.90798 5.92688 6.12729 6.35805 6.76035 6.95379 7.05163 7.35015 7.55085 8.91021 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023740 B = 0.002514 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.142730 B =11134.382330 C =11539.792051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.110 3.890 4 C -0.208 4.208 5 C -0.070 4.070 6 C -0.149 4.149 7 C -0.079 4.079 8 C 0.071 3.929 9 N -0.562 5.562 10 C 0.126 3.874 11 C -0.104 4.104 12 H 0.155 0.845 13 C 0.514 3.486 14 O -0.592 6.592 15 N -0.698 5.698 16 C 0.272 3.728 17 H 0.002 0.998 18 C -0.135 4.135 19 C -0.545 4.545 20 H 0.076 0.924 21 C 0.014 3.986 22 N -0.918 5.918 23 Si 0.970 3.030 24 H -0.265 1.265 25 H -0.289 1.289 26 H -0.270 1.270 27 C -0.134 4.134 28 C 0.523 3.477 29 O -0.565 6.565 30 H 0.106 0.894 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.153 0.847 34 H 0.163 0.837 35 H 0.160 0.840 36 H 0.142 0.858 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.408 0.592 40 H 0.040 0.960 41 H 0.011 0.989 42 H 0.065 0.935 43 H 0.264 0.736 44 H 0.142 0.858 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.345 22.565 6.820 25.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.064 3.936 4 C -0.227 4.227 5 C -0.087 4.087 6 C -0.167 4.167 7 C -0.098 4.098 8 C -0.019 4.019 9 N -0.291 5.291 10 C 0.005 3.995 11 C -0.125 4.125 12 H 0.173 0.827 13 C 0.300 3.700 14 O -0.473 6.473 15 N -0.347 5.347 16 C 0.168 3.832 17 H 0.020 0.980 18 C -0.194 4.194 19 C -0.583 4.583 20 H 0.094 0.906 21 C -0.186 4.186 22 N -0.557 5.557 23 Si 0.795 3.205 24 H -0.190 1.190 25 H -0.215 1.215 26 H -0.195 1.195 27 C -0.174 4.174 28 C 0.313 3.687 29 O -0.444 6.444 30 H 0.125 0.875 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.171 0.829 34 H 0.181 0.819 35 H 0.177 0.823 36 H 0.160 0.840 37 H 0.085 0.915 38 H 0.123 0.877 39 H 0.243 0.757 40 H 0.059 0.941 41 H 0.031 0.969 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.160 0.840 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.003 22.294 6.639 24.943 hybrid contribution 0.425 -0.979 -0.016 1.068 sum -8.578 21.314 6.623 23.911 Atomic orbital electron populations 1.23328 0.76404 1.05192 1.02535 1.86135 1.23590 1.27277 1.88384 1.19694 0.91807 0.85690 0.96451 1.21503 1.01247 0.91552 1.08432 1.21475 0.94979 0.97655 0.94638 1.21364 0.94108 0.98606 1.02652 1.21414 1.01266 0.90360 0.96792 1.17189 0.87002 0.86541 1.11143 1.45470 1.51793 1.24179 1.07677 1.22031 0.96466 0.94755 0.86293 1.22225 1.02759 0.93317 0.94230 0.82725 1.20586 0.80091 0.85622 0.83730 1.90667 1.41143 1.83049 1.32458 1.46220 1.38394 1.14458 1.35596 1.18332 0.94762 0.79717 0.90385 0.98049 1.21915 0.96112 1.01580 0.99817 1.21538 0.97921 1.05247 1.33641 0.90568 1.25784 1.00684 0.97769 0.94359 1.70050 1.34068 1.18077 1.33463 0.85423 0.79154 0.77317 0.78593 1.18970 1.21498 1.19459 1.22329 1.02967 0.96539 0.95537 1.21262 0.79036 0.84672 0.83707 1.90682 1.60596 1.70613 1.22540 0.87526 0.91399 0.90901 0.82908 0.81948 0.82267 0.83974 0.91487 0.87741 0.75664 0.94065 0.96947 0.91630 0.92639 0.83962 0.87877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.45 16 2 O -0.34 -9.36 10.24 -93.27 -0.95 -10.32 16 3 C 0.11 2.81 6.70 22.60 0.15 2.96 16 4 C -0.21 -3.72 9.04 22.35 0.20 -3.52 16 5 C -0.07 -0.96 10.04 22.28 0.22 -0.73 16 6 C -0.15 -2.19 10.04 22.27 0.22 -1.97 16 7 C -0.08 -1.60 9.96 22.37 0.22 -1.38 16 8 C 0.07 1.88 5.40 38.19 0.21 2.08 16 9 N -0.56 -15.57 2.70 -626.90 -1.69 -17.26 16 10 C 0.13 3.34 6.59 86.89 0.57 3.91 16 11 C -0.10 -2.57 3.56 -10.42 -0.04 -2.61 16 12 H 0.16 2.72 8.14 -2.38 -0.02 2.70 16 13 C 0.51 18.56 7.04 87.66 0.62 19.18 16 14 O -0.59 -27.05 15.23 -3.02 -0.05 -27.10 16 15 N -0.70 -26.59 5.02 -446.10 -2.24 -28.83 16 16 C 0.27 13.51 2.56 44.24 0.11 13.62 16 17 H 0.00 0.09 7.58 -2.39 -0.02 0.08 16 18 C -0.14 -6.71 9.26 71.98 0.67 -6.04 16 19 C -0.55 -27.81 8.73 25.60 0.22 -27.59 16 20 H 0.08 3.57 7.74 -2.91 -0.02 3.55 16 21 C 0.01 0.74 5.30 84.66 0.45 1.19 16 22 N -0.92 -51.92 11.32 21.45 0.24 -51.68 16 23 Si 0.97 41.13 29.54 68.60 2.03 43.15 16 24 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 25 H -0.29 -12.31 7.11 99.48 0.71 -11.61 16 26 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 27 C -0.13 -3.25 6.37 30.59 0.19 -3.06 16 28 C 0.52 15.81 7.98 87.90 0.70 16.51 16 29 O -0.57 -21.07 17.71 -3.09 -0.05 -21.12 16 30 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 0.94 7.66 -2.39 -0.02 0.93 16 32 H 0.07 0.96 7.66 -2.38 -0.02 0.94 16 33 H 0.15 1.92 6.30 -2.91 -0.02 1.90 16 34 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 35 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 36 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 37 H 0.07 2.19 7.07 -2.39 -0.02 2.17 16 38 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 39 H 0.41 12.64 8.54 -92.71 -0.79 11.85 16 40 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 42 H 0.06 3.59 6.07 -2.39 -0.01 3.57 16 43 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 44 H 0.14 2.60 8.14 -2.39 -0.02 2.58 16 45 H 0.10 2.77 7.89 -2.39 -0.02 2.75 16 Total: -1.00 -76.91 379.29 3.35 -73.56 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 0.23 Total: 25.59 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 5.84 Total: 14.00 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -3.69 Total: -97.77 kcal Atomic # 8 Polarization: -57.48 SS G_CDS: -1.06 Total: -58.53 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.15 kcal Total: -76.91 3.35 -73.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194714366.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.416 kcal (2) G-P(sol) polarization free energy of solvation -76.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds