Wall clock time and date at job start Tue Mar 31 2020 18:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35972 * 116.99931 * 2 1 4 4 C 1.38556 * 120.08794 * 0.27327 * 3 2 1 5 5 C 1.38236 * 120.01671 * 180.29845 * 4 3 2 6 6 C 1.38275 * 120.18212 * 359.72585 * 5 4 3 7 7 C 1.38201 * 120.16165 * 359.97116 * 6 5 4 8 8 C 1.38716 * 119.98550 * 0.02917 * 7 6 5 9 9 N 1.40127 * 120.09107 * 179.97438 * 8 7 6 10 10 C 1.46765 * 124.35095 * 89.99951 * 9 8 7 11 11 C 1.54476 * 105.47683 * 162.96063 * 10 9 8 12 12 H 1.08999 * 110.97109 * 143.56500 * 11 10 9 13 13 C 1.50690 * 110.97156 * 267.29993 * 11 10 9 14 14 O 1.21275 * 120.00240 * 359.97438 * 13 11 10 15 15 N 1.34782 * 120.00042 * 180.02562 * 13 11 10 16 16 C 1.46497 * 119.99869 * 179.97438 * 15 13 11 17 17 H 1.08994 * 109.47995 * 34.99483 * 16 15 13 18 18 C 1.53003 * 109.46874 * 274.99065 * 16 15 13 19 19 C 1.50708 * 109.47141 * 154.99508 * 16 15 13 20 20 H 1.07991 * 119.99789 * 0.02562 * 19 16 15 21 21 C 1.37877 * 120.00008 * 179.97438 * 19 16 15 22 22 N 1.31514 * 120.00089 * 180.02562 * 21 19 16 23 23 Si 1.86798 * 119.99938 * 0.02562 * 21 19 16 24 24 H 1.48506 * 109.47297 * 269.99556 * 23 21 19 25 25 H 1.48503 * 109.47261 * 149.99737 * 23 21 19 26 26 H 1.48500 * 109.47454 * 29.99730 * 23 21 19 27 27 C 1.54631 * 101.76247 * 25.41763 * 11 10 9 28 28 C 1.34418 * 124.35127 * 269.97178 * 9 8 7 29 29 O 1.21299 * 124.94006 * 0.43301 * 28 9 8 30 30 H 1.09007 * 109.46998 * 300.00332 * 1 2 3 31 31 H 1.09001 * 109.46970 * 59.99906 * 1 2 3 32 32 H 1.09000 * 109.47065 * 180.02562 * 1 2 3 33 33 H 1.08001 * 119.98463 * 0.04582 * 4 3 2 34 34 H 1.08001 * 119.90990 * 179.74504 * 5 4 3 35 35 H 1.07997 * 119.92045 * 180.02562 * 6 5 4 36 36 H 1.07999 * 120.00913 * 180.02562 * 7 6 5 37 37 H 1.09002 * 110.24539 * 43.95800 * 10 9 8 38 38 H 1.08997 * 110.24402 * 281.96495 * 10 9 8 39 39 H 0.96997 * 120.00005 * 359.97438 * 15 13 11 40 40 H 1.09003 * 109.47241 * 179.97438 * 18 16 15 41 41 H 1.08996 * 109.47696 * 300.00416 * 18 16 15 42 42 H 1.08998 * 109.46607 * 60.00413 * 18 16 15 43 43 H 0.96997 * 119.99848 * 180.02562 * 22 21 19 44 44 H 1.08999 * 110.48900 * 93.87955 * 27 11 10 45 45 H 1.09006 * 110.48516 * 216.52275 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2935 2.3747 0.0057 5 6 1.9225 3.6056 -0.0005 6 6 3.3032 3.6807 -0.0068 7 6 4.0615 2.5253 -0.0062 8 6 3.4373 1.2865 0.0001 9 7 4.2040 0.1135 0.0001 10 6 4.6623 -0.5762 1.2118 11 6 5.0653 -1.9946 0.7513 12 1 5.9366 -2.3504 1.3011 13 6 3.9129 -2.9552 0.8921 14 8 2.8479 -2.5657 1.3221 15 7 4.0659 -4.2475 0.5411 16 6 2.9456 -5.1814 0.6786 17 1 2.0115 -4.6628 0.4632 18 6 2.9086 -5.7265 2.1077 19 6 3.1213 -6.3226 -0.2900 20 1 3.9816 -6.3497 -0.9422 21 6 2.1842 -7.3327 -0.3425 22 7 2.3378 -8.3288 -1.1873 23 14 0.6966 -7.2862 0.7863 24 1 1.0164 -7.9870 2.0559 25 1 -0.4488 -7.9604 0.1238 26 1 0.3394 -5.8743 1.0766 27 6 5.4089 -1.7569 -0.7375 28 6 4.6137 -0.5249 -1.1096 29 8 4.3800 -0.1653 -2.2442 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 0.2149 2.3195 0.0109 34 1 1.3340 4.5112 -0.0002 35 1 3.7903 4.6446 -0.0112 36 1 5.1397 2.5868 -0.0106 37 1 3.8552 -0.6319 1.9423 38 1 5.5222 -0.0593 1.6376 39 1 4.9178 -4.5591 0.1975 40 1 2.0748 -6.4211 2.2102 41 1 3.8427 -6.2453 2.3231 42 1 2.7815 -4.9011 2.8081 43 1 1.6783 -9.0392 -1.2245 44 1 6.4764 -1.5728 -0.8581 45 1 5.0971 -2.6090 -1.3417 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194714383.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:34 Heat of formation + Delta-G solvation = -63.258934 kcal Electronic energy + Delta-G solvation = -29370.448987 eV Core-core repulsion = 25353.989530 eV Total energy + Delta-G solvation = -4016.459458 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.13116 -39.82021 -38.62629 -37.37964 -36.16502 -34.93255 -33.29637 -32.30557 -30.39747 -30.05190 -28.99561 -27.65030 -27.20586 -25.22189 -23.91640 -22.73226 -22.24822 -20.81486 -19.86281 -19.53984 -18.16093 -17.72880 -17.20505 -16.52346 -16.12376 -15.70769 -15.58062 -15.25848 -15.11391 -15.01991 -14.57388 -14.25849 -14.15567 -13.70351 -13.59432 -13.27319 -13.01718 -12.94313 -12.69256 -12.42369 -12.22122 -12.13793 -11.92968 -11.79281 -11.60037 -11.46910 -11.24557 -11.15757 -11.14076 -10.82461 -10.19946 -9.87460 -9.71975 -9.23985 -9.13548 -9.04958 -8.85823 -8.75858 -8.24614 -8.15730 -6.21232 -4.23623 1.04482 1.28850 2.62952 2.95917 3.14413 3.21973 3.31467 3.34075 3.37947 3.52336 3.81119 4.30695 4.32062 4.51772 4.68797 4.72028 4.82993 4.95505 5.08424 5.11403 5.13683 5.17894 5.21650 5.32083 5.40308 5.45712 5.53628 5.60102 5.65250 5.80898 5.81712 6.06275 6.17904 6.29011 6.29645 6.35717 6.47018 6.54615 6.76142 6.84048 7.09011 7.17823 7.28442 7.40284 7.51552 8.13645 8.27562 8.51498 8.75714 8.91688 9.39581 10.91047 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016601 B = 0.003556 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.217397 B = 7872.367117 C = 8632.867647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.287 6.287 3 C 0.144 3.856 4 C -0.210 4.210 5 C -0.075 4.075 6 C -0.158 4.158 7 C -0.072 4.072 8 C 0.111 3.889 9 N -0.564 5.564 10 C 0.123 3.877 11 C -0.126 4.126 12 H 0.122 0.878 13 C 0.507 3.493 14 O -0.536 6.536 15 N -0.700 5.700 16 C 0.238 3.762 17 H 0.048 0.952 18 C -0.160 4.160 19 C -0.535 4.535 20 H 0.080 0.920 21 C 0.078 3.922 22 N -0.892 5.892 23 Si 0.886 3.114 24 H -0.277 1.277 25 H -0.295 1.295 26 H -0.263 1.263 27 C -0.143 4.143 28 C 0.527 3.473 29 O -0.524 6.524 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.103 0.897 33 H 0.132 0.868 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.395 0.605 40 H 0.046 0.954 41 H 0.053 0.947 42 H 0.035 0.965 43 H 0.267 0.733 44 H 0.115 0.885 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.171 21.446 6.370 22.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.198 6.198 3 C 0.095 3.905 4 C -0.229 4.229 5 C -0.093 4.093 6 C -0.177 4.177 7 C -0.091 4.091 8 C 0.020 3.980 9 N -0.295 5.295 10 C 0.001 3.999 11 C -0.147 4.147 12 H 0.140 0.860 13 C 0.291 3.709 14 O -0.413 6.413 15 N -0.348 5.348 16 C 0.135 3.865 17 H 0.065 0.935 18 C -0.218 4.218 19 C -0.573 4.573 20 H 0.098 0.902 21 C -0.126 4.126 22 N -0.529 5.529 23 Si 0.716 3.284 24 H -0.203 1.203 25 H -0.222 1.222 26 H -0.188 1.188 27 C -0.183 4.183 28 C 0.315 3.685 29 O -0.399 6.399 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.122 0.878 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.228 0.772 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.077 0.923 44 H 0.133 0.867 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.231 21.529 5.988 22.579 hybrid contribution -0.687 -0.298 0.458 0.878 sum 2.544 21.232 6.446 22.334 Atomic orbital electron populations 1.23093 0.78437 1.04512 1.00590 1.86375 1.21144 1.25137 1.87134 1.19489 0.91715 0.85352 0.93908 1.21202 1.00231 0.91985 1.09527 1.20978 0.94666 0.96916 0.96715 1.20890 0.93771 0.97928 1.05107 1.21128 1.00181 0.90599 0.97186 1.16678 0.86413 0.85934 1.08951 1.45283 1.52171 1.24217 1.07790 1.22034 1.00584 0.89745 0.87550 1.22353 0.99622 0.95358 0.97415 0.85986 1.20042 0.88859 0.83182 0.78821 1.90687 1.27471 1.77337 1.45831 1.46131 1.16609 1.08187 1.63860 1.19076 0.86381 0.88280 0.92763 0.93468 1.22444 1.00983 0.99488 0.98925 1.21048 1.10709 1.04962 1.20547 0.90163 1.24831 0.97650 0.94841 0.95230 1.69868 1.35988 1.10930 1.36117 0.86876 0.82376 0.78960 0.80236 1.20337 1.22200 1.18752 1.22339 1.01980 0.98262 0.95762 1.20912 0.78886 0.84548 0.84124 1.90720 1.58187 1.69985 1.20994 0.92813 0.92940 0.87846 0.85069 0.85608 0.85501 0.85207 0.88438 0.90455 0.77164 0.93548 0.92811 0.94584 0.92297 0.86725 0.86867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.29 -4.86 10.24 -19.65 -0.20 -5.07 16 3 C 0.14 2.15 6.70 -39.07 -0.26 1.89 16 4 C -0.21 -2.46 9.04 -39.47 -0.36 -2.82 16 5 C -0.07 -0.73 10.04 -39.57 -0.40 -1.13 16 6 C -0.16 -1.54 10.04 -39.58 -0.40 -1.94 16 7 C -0.07 -0.83 9.96 -39.42 -0.39 -1.22 16 8 C 0.11 1.61 5.40 -83.49 -0.45 1.16 16 9 N -0.56 -8.32 2.70 -112.12 -0.30 -8.62 16 10 C 0.12 1.49 6.61 -3.12 -0.02 1.47 16 11 C -0.13 -1.53 3.54 -90.14 -0.32 -1.85 16 12 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 13 C 0.51 8.93 7.05 -10.99 -0.08 8.86 16 14 O -0.54 -11.37 15.19 5.56 0.08 -11.29 16 15 N -0.70 -13.19 5.00 -54.93 -0.27 -13.46 16 16 C 0.24 5.56 2.15 -69.08 -0.15 5.41 16 17 H 0.05 1.24 6.64 -51.93 -0.34 0.89 16 18 C -0.16 -3.48 8.96 37.16 0.33 -3.15 16 19 C -0.53 -14.31 9.31 -34.44 -0.32 -14.63 16 20 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16 21 C 0.08 2.18 5.45 -17.82 -0.10 2.09 16 22 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 23 Si 0.89 21.68 24.37 -169.99 -4.14 17.54 16 24 H -0.28 -6.53 6.87 56.52 0.39 -6.14 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 26 H -0.26 -6.39 6.53 56.52 0.37 -6.02 16 27 C -0.14 -1.79 6.40 -26.74 -0.17 -1.96 16 28 C 0.53 8.66 7.99 -10.86 -0.09 8.58 16 29 O -0.52 -10.64 17.71 5.54 0.10 -10.54 16 30 H 0.05 0.56 7.65 -51.93 -0.40 0.16 16 31 H 0.05 0.57 7.68 -51.93 -0.40 0.17 16 32 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.13 1.26 6.30 -52.49 -0.33 0.93 16 34 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 37 H 0.10 1.38 7.02 -51.93 -0.36 1.01 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.39 6.44 8.54 -40.82 -0.35 6.09 16 40 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.11 1.58 7.84 -51.93 -0.41 1.17 16 LS Contribution 372.37 15.07 5.61 5.61 Total: -1.00 -36.31 372.37 -6.69 -43.00 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -6.17 Total: 6.32 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -2.17 Total: 2.12 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: 0.20 Total: -47.70 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.02 Total: -26.90 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.14 Total: 17.54 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.31 -6.69 -43.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194714383.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.254 kcal (2) G-P(sol) polarization free energy of solvation -36.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds