Wall clock time and date at job start Tue Mar 31 2020 18:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35972 * 116.99931 * 2 1 4 4 C 1.38556 * 120.08794 * 0.27327 * 3 2 1 5 5 C 1.38236 * 120.01671 * 180.29845 * 4 3 2 6 6 C 1.38275 * 120.18212 * 359.72585 * 5 4 3 7 7 C 1.38201 * 120.16165 * 359.97116 * 6 5 4 8 8 C 1.38716 * 119.98550 * 0.02917 * 7 6 5 9 9 N 1.40127 * 120.09107 * 179.97438 * 8 7 6 10 10 C 1.46765 * 124.35095 * 89.99951 * 9 8 7 11 11 C 1.54476 * 105.47683 * 162.96063 * 10 9 8 12 12 H 1.08999 * 110.97109 * 143.56500 * 11 10 9 13 13 C 1.50690 * 110.97156 * 267.29993 * 11 10 9 14 14 O 1.21275 * 120.00240 * 359.97438 * 13 11 10 15 15 N 1.34782 * 120.00042 * 180.02562 * 13 11 10 16 16 C 1.46497 * 119.99869 * 179.97438 * 15 13 11 17 17 H 1.08994 * 109.47995 * 34.99483 * 16 15 13 18 18 C 1.53003 * 109.46874 * 274.99065 * 16 15 13 19 19 C 1.50708 * 109.47141 * 154.99508 * 16 15 13 20 20 H 1.07991 * 119.99789 * 0.02562 * 19 16 15 21 21 C 1.37877 * 120.00008 * 179.97438 * 19 16 15 22 22 N 1.31514 * 120.00089 * 180.02562 * 21 19 16 23 23 Si 1.86798 * 119.99938 * 0.02562 * 21 19 16 24 24 H 1.48506 * 109.47297 * 269.99556 * 23 21 19 25 25 H 1.48503 * 109.47261 * 149.99737 * 23 21 19 26 26 H 1.48500 * 109.47454 * 29.99730 * 23 21 19 27 27 C 1.54631 * 101.76247 * 25.41763 * 11 10 9 28 28 C 1.34418 * 124.35127 * 269.97178 * 9 8 7 29 29 O 1.21299 * 124.94006 * 0.43301 * 28 9 8 30 30 H 1.09007 * 109.46998 * 300.00332 * 1 2 3 31 31 H 1.09001 * 109.46970 * 59.99906 * 1 2 3 32 32 H 1.09000 * 109.47065 * 180.02562 * 1 2 3 33 33 H 1.08001 * 119.98463 * 0.04582 * 4 3 2 34 34 H 1.08001 * 119.90990 * 179.74504 * 5 4 3 35 35 H 1.07997 * 119.92045 * 180.02562 * 6 5 4 36 36 H 1.07999 * 120.00913 * 180.02562 * 7 6 5 37 37 H 1.09002 * 110.24539 * 43.95800 * 10 9 8 38 38 H 1.08997 * 110.24402 * 281.96495 * 10 9 8 39 39 H 0.96997 * 120.00005 * 359.97438 * 15 13 11 40 40 H 1.09003 * 109.47241 * 179.97438 * 18 16 15 41 41 H 1.08996 * 109.47696 * 300.00416 * 18 16 15 42 42 H 1.08998 * 109.46607 * 60.00413 * 18 16 15 43 43 H 0.96997 * 119.99848 * 180.02562 * 22 21 19 44 44 H 1.08999 * 110.48900 * 93.87955 * 27 11 10 45 45 H 1.09006 * 110.48516 * 216.52275 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2935 2.3747 0.0057 5 6 1.9225 3.6056 -0.0005 6 6 3.3032 3.6807 -0.0068 7 6 4.0615 2.5253 -0.0062 8 6 3.4373 1.2865 0.0001 9 7 4.2040 0.1135 0.0001 10 6 4.6623 -0.5762 1.2118 11 6 5.0653 -1.9946 0.7513 12 1 5.9366 -2.3504 1.3011 13 6 3.9129 -2.9552 0.8921 14 8 2.8479 -2.5657 1.3221 15 7 4.0659 -4.2475 0.5411 16 6 2.9456 -5.1814 0.6786 17 1 2.0115 -4.6628 0.4632 18 6 2.9086 -5.7265 2.1077 19 6 3.1213 -6.3226 -0.2900 20 1 3.9816 -6.3497 -0.9422 21 6 2.1842 -7.3327 -0.3425 22 7 2.3378 -8.3288 -1.1873 23 14 0.6966 -7.2862 0.7863 24 1 1.0164 -7.9870 2.0559 25 1 -0.4488 -7.9604 0.1238 26 1 0.3394 -5.8743 1.0766 27 6 5.4089 -1.7569 -0.7375 28 6 4.6137 -0.5249 -1.1096 29 8 4.3800 -0.1653 -2.2442 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 0.2149 2.3195 0.0109 34 1 1.3340 4.5112 -0.0002 35 1 3.7903 4.6446 -0.0112 36 1 5.1397 2.5868 -0.0106 37 1 3.8552 -0.6319 1.9423 38 1 5.5222 -0.0593 1.6376 39 1 4.9178 -4.5591 0.1975 40 1 2.0748 -6.4211 2.2102 41 1 3.8427 -6.2453 2.3231 42 1 2.7815 -4.9011 2.8081 43 1 1.6783 -9.0392 -1.2245 44 1 6.4764 -1.5728 -0.8581 45 1 5.0971 -2.6090 -1.3417 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194714383.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:33 Heat of formation + Delta-G solvation = -90.244916 kcal Electronic energy + Delta-G solvation = -29371.619187 eV Core-core repulsion = 25353.989530 eV Total energy + Delta-G solvation = -4017.629658 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.22300 -40.92265 -40.01710 -38.36218 -37.46786 -36.63640 -34.55039 -34.08131 -31.74505 -31.19458 -30.10257 -28.71551 -28.18466 -27.21913 -25.15450 -23.77773 -23.14598 -22.43288 -21.05648 -20.91228 -19.27517 -19.17003 -18.24042 -18.12253 -17.40777 -17.24069 -16.78235 -16.50677 -16.28189 -16.11009 -15.74882 -15.64570 -15.36778 -14.97932 -14.79415 -14.70327 -14.64123 -14.16695 -14.04352 -13.68040 -13.58623 -13.45619 -13.11451 -12.99693 -12.84409 -12.79149 -12.60414 -12.48356 -12.13775 -12.09951 -12.06850 -11.62520 -11.27018 -11.09532 -10.87682 -10.62647 -9.93883 -9.92624 -9.81170 -9.19070 -8.38603 -6.43900 0.17803 0.40228 1.24932 1.33445 1.42635 1.43390 1.77122 1.96273 2.24918 2.35944 2.43052 2.66804 2.97835 3.27613 3.46706 3.76877 3.85464 3.89001 3.97842 4.16262 4.23997 4.26085 4.38165 4.40133 4.47544 4.48851 4.57995 4.58633 4.60965 4.67883 4.73146 4.76558 4.82040 4.88590 5.03074 5.25180 5.32079 5.34495 5.45786 5.46519 5.60848 5.68641 5.82946 6.01049 6.14513 6.41407 6.58608 6.91451 7.11487 7.19745 7.50678 8.76797 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016601 B = 0.003556 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.217397 B = 7872.367117 C = 8632.867647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.329 6.329 3 C 0.105 3.895 4 C -0.215 4.215 5 C -0.071 4.071 6 C -0.150 4.150 7 C -0.076 4.076 8 C 0.074 3.926 9 N -0.561 5.561 10 C 0.121 3.879 11 C -0.109 4.109 12 H 0.178 0.822 13 C 0.501 3.499 14 O -0.575 6.575 15 N -0.700 5.700 16 C 0.245 3.755 17 H 0.014 0.986 18 C -0.152 4.152 19 C -0.532 4.532 20 H 0.057 0.943 21 C 0.028 3.972 22 N -0.934 5.934 23 Si 0.939 3.061 24 H -0.257 1.257 25 H -0.295 1.295 26 H -0.266 1.266 27 C -0.134 4.134 28 C 0.509 3.491 29 O -0.579 6.579 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.146 0.854 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.148 0.852 37 H 0.074 0.926 38 H 0.127 0.873 39 H 0.408 0.592 40 H 0.036 0.964 41 H 0.068 0.932 42 H 0.047 0.953 43 H 0.270 0.730 44 H 0.163 0.837 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.699 23.988 8.330 26.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.242 6.242 3 C 0.058 3.942 4 C -0.234 4.234 5 C -0.089 4.089 6 C -0.168 4.168 7 C -0.095 4.095 8 C -0.016 4.016 9 N -0.290 5.290 10 C 0.000 4.000 11 C -0.130 4.130 12 H 0.195 0.805 13 C 0.287 3.713 14 O -0.455 6.455 15 N -0.349 5.349 16 C 0.139 3.861 17 H 0.032 0.968 18 C -0.210 4.210 19 C -0.570 4.570 20 H 0.076 0.924 21 C -0.172 4.172 22 N -0.573 5.573 23 Si 0.767 3.233 24 H -0.182 1.182 25 H -0.222 1.222 26 H -0.191 1.191 27 C -0.174 4.174 28 C 0.299 3.701 29 O -0.459 6.459 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.164 0.836 34 H 0.179 0.821 35 H 0.180 0.820 36 H 0.166 0.834 37 H 0.093 0.907 38 H 0.145 0.855 39 H 0.244 0.756 40 H 0.055 0.945 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.181 0.819 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.789 24.089 7.998 25.830 hybrid contribution -1.166 -0.947 -0.187 1.514 sum 3.623 23.142 7.811 24.692 Atomic orbital electron populations 1.23179 0.77271 1.04164 1.02259 1.86283 1.22795 1.27107 1.88054 1.19888 0.92431 0.85620 0.96226 1.21485 1.01037 0.91856 1.09003 1.21442 0.95223 0.97299 0.94902 1.21362 0.93868 0.98757 1.02830 1.21407 1.01319 0.90052 0.96771 1.17200 0.86714 0.86970 1.10742 1.45447 1.51223 1.24231 1.08089 1.22273 1.01532 0.89946 0.86241 1.22420 0.98773 0.93850 0.97929 0.80486 1.21017 0.89972 0.83041 0.77248 1.90681 1.29631 1.77856 1.47303 1.45958 1.15993 1.08451 1.64508 1.18677 0.86727 0.87590 0.93056 0.96820 1.22309 1.01376 0.99702 0.97633 1.21304 1.09586 1.05670 1.20476 0.92439 1.25559 1.00311 0.94702 0.96611 1.69979 1.37320 1.11989 1.38052 0.86006 0.79234 0.78792 0.79287 1.18229 1.22218 1.19090 1.22396 1.04113 0.95635 0.95221 1.21647 0.79016 0.85578 0.83816 1.90672 1.60579 1.71602 1.23026 0.90768 0.91559 0.89245 0.83615 0.82079 0.81992 0.83434 0.90738 0.85477 0.75586 0.94500 0.91285 0.93374 0.92124 0.81915 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 9.81 113.37 1.11 1.80 16 2 O -0.33 -11.82 10.24 -93.23 -0.95 -12.77 16 3 C 0.11 3.22 6.70 22.60 0.15 3.37 16 4 C -0.21 -4.83 9.04 22.34 0.20 -4.63 16 5 C -0.07 -1.18 10.04 22.28 0.22 -0.96 16 6 C -0.15 -2.44 10.04 22.27 0.22 -2.22 16 7 C -0.08 -1.63 9.96 22.38 0.22 -1.41 16 8 C 0.07 2.14 5.40 38.19 0.21 2.35 16 9 N -0.56 -16.21 2.70 -627.23 -1.69 -17.90 16 10 C 0.12 2.68 6.61 86.83 0.57 3.25 16 11 C -0.11 -2.35 3.54 -10.49 -0.04 -2.38 16 12 H 0.18 1.95 8.14 -2.39 -0.02 1.93 16 13 C 0.50 17.30 7.05 87.65 0.62 17.92 16 14 O -0.58 -24.83 15.19 -3.01 -0.05 -24.88 16 15 N -0.70 -26.05 5.00 -446.10 -2.23 -28.28 16 16 C 0.24 11.50 2.15 44.25 0.10 11.60 16 17 H 0.01 0.75 6.64 -2.39 -0.02 0.73 16 18 C -0.15 -6.44 8.96 71.98 0.65 -5.80 16 19 C -0.53 -29.05 9.31 25.60 0.24 -28.81 16 20 H 0.06 3.33 7.98 -2.92 -0.02 3.30 16 21 C 0.03 1.58 5.45 84.65 0.46 2.04 16 22 N -0.93 -56.49 13.96 21.45 0.30 -56.19 16 23 Si 0.94 45.21 24.37 68.60 1.67 46.89 16 24 H -0.26 -11.48 6.87 99.48 0.68 -10.79 16 25 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 26 H -0.27 -12.83 6.53 99.48 0.65 -12.18 16 27 C -0.13 -3.09 6.40 30.59 0.20 -2.90 16 28 C 0.51 16.73 7.99 87.90 0.70 17.43 16 29 O -0.58 -24.38 17.71 -3.09 -0.05 -24.43 16 30 H 0.07 1.59 7.65 -2.38 -0.02 1.57 16 31 H 0.07 1.50 7.68 -2.39 -0.02 1.49 16 32 H 0.09 2.53 8.14 -2.39 -0.02 2.52 16 33 H 0.15 2.66 6.30 -2.91 -0.02 2.64 16 34 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 35 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 36 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 37 H 0.07 2.05 7.02 -2.39 -0.02 2.04 16 38 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.41 12.90 8.54 -92.71 -0.79 12.11 16 40 H 0.04 1.62 3.27 -2.39 -0.01 1.61 16 41 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 44 H 0.16 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.10 2.61 7.84 -2.38 -0.02 2.59 16 Total: -1.00 -85.50 372.37 2.98 -82.51 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: 0.15 Total: 24.40 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 5.83 Total: 10.65 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -3.62 Total: -102.37 kcal Atomic # 8 Polarization: -61.03 SS G_CDS: -1.06 Total: -62.08 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.67 Total: 46.89 kcal Total: -85.50 2.98 -82.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194714383.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.732 kcal (2) G-P(sol) polarization free energy of solvation -85.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds