Wall clock time and date at job start Tue Mar 31 2020 17:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21287 * 119.99681 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00198 * 180.02562 * 13 12 2 16 16 C 1.52992 * 109.47385 * 180.02562 * 15 13 12 17 17 N 1.46506 * 109.47441 * 180.02562 * 16 15 13 18 18 C 1.40207 * 120.50717 * 89.99761 * 17 16 15 19 19 C 1.38502 * 120.74375 * 15.46550 * 18 17 16 20 20 C 1.38282 * 119.81854 * 180.02562 * 19 18 17 21 21 C 1.38282 * 120.19819 * 0.03388 * 20 19 18 22 22 C 1.38308 * 120.25873 * 359.96518 * 21 20 19 23 23 C 1.38396 * 119.87332 * 359.97438 * 22 21 20 24 24 O 1.35983 * 120.66329 * 180.09752 * 23 22 21 25 25 C 1.43005 * 116.71523 * 147.15924 * 24 23 22 26 26 H 1.08998 * 109.44868 * 166.43892 * 25 24 23 27 27 C 1.53001 * 109.44214 * 286.34150 * 25 24 23 28 28 C 1.35083 * 120.50510 * 269.72396 * 17 16 15 29 29 O 1.21295 * 120.13690 * 1.66292 * 28 17 16 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 34 34 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 35 35 H 1.08997 * 109.47364 * 300.00354 * 15 13 12 36 36 H 1.09001 * 109.46822 * 60.00123 * 15 13 12 37 37 H 1.09007 * 109.47184 * 300.00285 * 16 15 13 38 38 H 1.09001 * 109.47135 * 60.00198 * 16 15 13 39 39 H 1.08004 * 120.09100 * 0.04339 * 19 18 17 40 40 H 1.08003 * 119.90275 * 180.02562 * 20 19 18 41 41 H 1.08004 * 119.86876 * 179.97438 * 21 20 19 42 42 H 1.08006 * 120.06478 * 180.02562 * 22 21 20 43 43 H 1.09005 * 109.47285 * 59.99997 * 27 25 24 44 44 H 1.09000 * 109.47081 * 179.97438 * 27 25 24 45 45 H 1.08993 * 109.47257 * 299.99692 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8261 -0.4208 5.2204 11 1 1.8261 -2.5204 4.0076 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8589 1.1587 -2.4114 15 6 2.6488 -0.7286 -3.5878 16 6 2.7010 0.2547 -4.7588 17 7 3.1882 -0.4361 -5.9553 18 6 2.2900 -1.0623 -6.8311 19 6 0.9346 -0.7832 -6.7740 20 6 0.0657 -1.4122 -7.6466 21 6 0.5462 -2.3183 -8.5741 22 6 1.8986 -2.6013 -8.6361 23 6 2.7745 -1.9747 -7.7669 24 8 4.1075 -2.2394 -7.8151 25 6 4.9891 -1.1619 -7.4883 26 1 5.9945 -1.5514 -7.3283 27 6 5.0111 -0.1547 -8.6398 28 6 4.5093 -0.4748 -6.2346 29 8 5.3069 0.0382 -5.4783 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 0.7096 1.1617 3.4844 34 1 2.2491 -1.6316 -1.1527 35 1 3.6479 -1.1211 -3.3988 36 1 1.9759 -1.5504 -3.8327 37 1 1.7020 0.6477 -4.9480 38 1 3.3741 1.0762 -4.5137 39 1 0.5574 -0.0759 -6.0501 40 1 -0.9914 -1.1953 -7.6036 41 1 -0.1372 -2.8069 -9.2529 42 1 2.2706 -3.3092 -9.3621 43 1 4.0058 0.2343 -8.8015 44 1 5.6826 0.6670 -8.3910 45 1 5.3602 -0.6477 -9.5470 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194741791.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:02 Heat of formation + Delta-G solvation = -79.026909 kcal Electronic energy + Delta-G solvation = -28462.260207 eV Core-core repulsion = 24445.116998 eV Total energy + Delta-G solvation = -4017.143208 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.95772 -39.24773 -38.91236 -37.99999 -36.07444 -34.81910 -32.50596 -32.36234 -31.61910 -30.64073 -29.39313 -28.62408 -25.73764 -25.24639 -24.18880 -23.57050 -22.25811 -20.83448 -19.51593 -19.45893 -19.41649 -17.75834 -17.11804 -16.55327 -16.15854 -15.80212 -15.72221 -15.39791 -15.15466 -15.02746 -14.77185 -14.43402 -14.35567 -14.08960 -13.56630 -13.35946 -13.02164 -12.85349 -12.72746 -12.55296 -12.42026 -12.32965 -12.13824 -11.71230 -11.54765 -11.45375 -11.13325 -11.06288 -10.93899 -10.75643 -10.63170 -10.34020 -10.24145 -10.07956 -9.12217 -9.06522 -8.95885 -8.55826 -8.10624 -7.93978 -6.12862 -4.22246 0.78729 0.95579 2.06501 2.24561 2.94194 3.25634 3.30684 3.31641 3.34531 3.39541 3.64507 4.09622 4.32004 4.37244 4.39105 4.49964 4.67012 4.82528 4.91801 4.95665 5.01771 5.04665 5.14718 5.19364 5.28485 5.31941 5.44262 5.55710 5.60920 5.70094 5.77310 5.89616 5.95193 6.15088 6.17705 6.33180 6.65335 6.80536 6.93936 7.07206 7.13185 7.43356 7.50975 7.53686 7.68078 7.90006 8.13806 8.63438 8.76071 9.08294 9.45194 10.93136 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018312 B = 0.002596 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.674842 B =10781.597782 C =11477.056757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.707 5.707 13 C 0.507 3.493 14 O -0.558 6.558 15 C -0.157 4.157 16 C 0.125 3.875 17 N -0.548 5.548 18 C 0.101 3.899 19 C -0.124 4.124 20 C -0.108 4.108 21 C -0.115 4.115 22 C -0.110 4.110 23 C 0.076 3.924 24 O -0.300 6.300 25 C 0.080 3.920 26 H 0.150 0.850 27 C -0.176 4.176 28 C 0.489 3.511 29 O -0.500 6.500 30 H 0.090 0.910 31 H 0.026 0.974 32 H 0.014 0.986 33 H 0.265 0.735 34 H 0.389 0.611 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.138 0.862 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.137 0.863 43 H 0.066 0.934 44 H 0.082 0.918 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.639 -6.949 -25.967 26.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.067 0.933 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.354 5.354 13 C 0.292 3.708 14 O -0.437 6.437 15 C -0.199 4.199 16 C 0.004 3.996 17 N -0.273 5.273 18 C 0.006 3.994 19 C -0.145 4.145 20 C -0.127 4.127 21 C -0.134 4.134 22 C -0.129 4.129 23 C 0.030 3.970 24 O -0.215 6.215 25 C 0.020 3.980 26 H 0.167 0.833 27 C -0.234 4.234 28 C 0.277 3.723 29 O -0.374 6.374 30 H 0.109 0.891 31 H 0.045 0.955 32 H 0.033 0.967 33 H 0.075 0.925 34 H 0.221 0.779 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.121 0.879 39 H 0.155 0.845 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.155 0.845 43 H 0.085 0.915 44 H 0.101 0.899 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.947 -5.810 -25.375 26.105 hybrid contribution 0.355 -0.807 1.109 1.416 sum 2.302 -6.617 -24.267 25.258 Atomic orbital electron populations 1.22075 0.98423 0.99092 1.00903 1.18753 0.91034 0.94012 0.79969 0.93331 1.21189 1.32549 1.13279 0.90372 0.92131 1.24886 0.94780 0.94949 0.99058 1.69888 1.35822 1.22397 1.24011 0.86499 0.79213 0.79579 0.81760 1.20145 1.21092 1.20149 1.46531 1.64747 1.13601 1.10523 1.20120 0.78683 0.87412 0.84634 1.90663 1.51778 1.15971 1.85327 1.21968 1.03716 0.99884 0.94287 1.21468 1.02193 0.94691 0.81235 1.45842 1.05700 1.52255 1.23468 1.18163 0.91088 0.97047 0.93093 1.20850 0.90568 1.01707 1.01346 1.21031 0.99903 0.96646 0.95141 1.20996 0.94404 0.98634 0.99338 1.20519 0.92495 1.01852 0.98032 1.18597 0.83747 0.98147 0.96533 1.86286 1.13103 1.35789 1.86308 1.22912 0.95032 0.88107 0.91911 0.83259 1.22334 1.03964 0.99227 0.97843 1.21485 0.82027 0.80474 0.88332 1.90807 1.53045 1.44577 1.48926 0.89110 0.95481 0.96677 0.92497 0.77859 0.88942 0.89140 0.88570 0.87946 0.84474 0.85011 0.84999 0.84539 0.91531 0.89875 0.89686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.26 37.16 0.34 -3.30 16 2 C 0.26 6.80 2.56 -69.08 -0.18 6.62 16 3 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 4 C -0.54 -14.40 8.73 -34.44 -0.30 -14.70 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 7 N -0.88 -25.10 11.32 55.43 0.63 -24.47 16 8 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 N -0.71 -14.91 5.07 -54.93 -0.28 -15.19 16 13 C 0.51 10.10 7.79 -10.99 -0.09 10.01 16 14 O -0.56 -13.07 15.65 5.55 0.09 -12.98 16 15 C -0.16 -2.36 6.02 -27.89 -0.17 -2.53 16 16 C 0.13 1.78 4.49 -4.04 -0.02 1.76 16 17 N -0.55 -6.96 2.72 -113.19 -0.31 -7.27 16 18 C 0.10 1.12 6.39 -83.50 -0.53 0.59 16 19 C -0.12 -1.22 9.36 -39.47 -0.37 -1.59 16 20 C -0.11 -0.85 10.04 -39.55 -0.40 -1.24 16 21 C -0.11 -0.80 10.04 -39.54 -0.40 -1.20 16 22 C -0.11 -0.88 10.00 -39.50 -0.39 -1.28 16 23 C 0.08 0.78 5.85 -39.09 -0.23 0.55 16 24 O -0.30 -3.09 10.18 -19.69 -0.20 -3.29 16 25 C 0.08 0.76 3.82 -27.83 -0.11 0.65 16 26 H 0.15 1.15 8.14 -51.93 -0.42 0.73 16 27 C -0.18 -1.30 9.29 37.16 0.35 -0.96 16 28 C 0.49 6.38 6.92 -10.80 -0.07 6.31 16 29 O -0.50 -8.12 16.77 5.54 0.09 -8.03 16 30 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.27 7.14 8.31 -40.82 -0.34 6.81 16 34 H 0.39 7.17 8.54 -40.82 -0.35 6.82 16 35 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.10 1.28 5.92 -51.93 -0.31 0.97 16 38 H 0.10 1.66 7.44 -51.93 -0.39 1.28 16 39 H 0.14 1.32 6.12 -52.48 -0.32 1.00 16 40 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 41 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 42 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 43 H 0.07 0.54 7.81 -51.93 -0.41 0.13 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 375.10 15.07 5.65 5.65 Total: -1.00 -32.97 375.10 -8.25 -41.22 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.25 Total: 7.11 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -2.66 Total: 1.40 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 0.04 Total: -46.93 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.02 Total: -24.30 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.97 -8.25 -41.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194741791.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.803 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds